Wall clock time and date at job start Sat Mar 6 2021 23:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.37656 * 125.67745 * 2 1 4 4 C 1.46680 * 126.23251 * 359.96128 * 3 2 1 5 5 O 1.21688 * 119.99782 * 4.29453 * 4 3 2 6 6 N 1.34770 * 119.99627 * 184.29219 * 4 3 2 7 7 C 1.46500 * 119.99877 * 174.61293 * 6 4 3 8 8 H 1.09000 * 109.47311 * 325.00655 * 7 6 4 9 9 C 1.53005 * 109.47010 * 85.00028 * 7 6 4 10 10 C 1.52997 * 109.47093 * 180.02562 * 9 7 6 11 11 C 1.52994 * 109.47361 * 299.99973 * 10 9 7 12 12 H 1.09002 * 109.47780 * 180.02562 * 11 10 9 13 13 O 1.42902 * 109.47425 * 300.00369 * 11 10 9 14 14 C 1.53004 * 109.47319 * 60.00165 * 11 10 9 15 15 C 1.52994 * 109.47414 * 204.99982 * 7 6 4 16 16 C 1.37866 * 107.53036 * 179.69935 * 3 2 1 17 17 C 1.39832 * 107.08992 * 0.26396 * 16 3 2 18 18 C 1.35456 * 107.86582 * 359.97438 * 17 16 3 19 19 C 1.50693 * 125.56657 * 180.02562 * 18 17 16 20 20 O 1.42901 * 109.47305 * 209.97369 * 19 18 17 21 21 Si 1.86292 * 109.47299 * 329.97534 * 19 18 17 22 22 H 1.08999 * 109.46835 * 91.26087 * 1 2 3 23 23 H 1.08997 * 109.47123 * 211.26518 * 1 2 3 24 24 H 1.09003 * 109.46692 * 331.26508 * 1 2 3 25 25 H 0.96999 * 120.00428 * 354.61858 * 6 4 3 26 26 H 1.09001 * 109.47259 * 300.00557 * 9 7 6 27 27 H 1.09000 * 109.47096 * 60.00137 * 9 7 6 28 28 H 1.09000 * 109.47280 * 60.00595 * 10 9 7 29 29 H 1.09007 * 109.47164 * 180.02562 * 10 9 7 30 30 H 0.96699 * 114.00075 * 179.97438 * 13 11 10 31 31 H 1.08997 * 109.47531 * 180.02562 * 14 11 10 32 32 H 1.09000 * 109.46571 * 59.99838 * 14 11 10 33 33 H 1.09000 * 109.47431 * 300.00599 * 15 7 6 34 34 H 1.08997 * 109.47168 * 60.00466 * 15 7 6 35 35 H 1.08001 * 126.45759 * 180.29192 * 16 3 2 36 36 H 1.07998 * 126.07567 * 179.97438 * 17 16 3 37 37 H 1.09005 * 109.46976 * 89.97931 * 19 18 17 38 38 H 0.96707 * 113.99648 * 59.99715 * 20 19 18 39 39 H 1.48505 * 110.00155 * 58.68333 * 21 19 18 40 40 H 1.48500 * 109.99997 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2679 1.1182 0.0000 4 6 1.8124 2.5125 -0.0008 5 8 0.6245 2.7645 0.0774 6 7 2.7096 3.5143 -0.0881 7 6 2.2506 4.9004 -0.2079 8 1 1.3369 4.9305 -0.8015 9 6 1.9721 5.4676 1.1856 10 6 1.4921 6.9150 1.0605 11 6 2.5729 7.7534 0.3752 12 1 2.2311 8.7846 0.2864 13 8 3.7709 7.7144 1.1533 14 6 2.8513 7.1862 -1.0183 15 6 3.3318 5.7384 -0.8929 16 6 3.5780 0.6888 0.0069 17 6 3.5522 -0.7093 0.0049 18 6 2.2555 -1.1010 -0.0024 19 6 1.7710 -2.5279 -0.0063 20 8 0.5163 -2.6031 -0.6862 21 14 3.0159 -3.6041 -0.8794 22 1 -0.3633 -0.0226 -1.0274 23 1 -0.3633 -0.8784 0.5333 24 1 -0.3633 0.9012 0.4941 25 1 3.6594 3.3177 -0.0716 26 1 1.2018 4.8706 1.6737 27 1 2.8857 5.4375 1.7794 28 1 0.5783 6.9447 0.4670 29 1 1.2942 7.3192 2.0533 30 1 4.5008 8.2254 0.7775 31 1 3.6217 7.7832 -1.5064 32 1 1.9376 7.2159 -1.6118 33 1 4.2455 5.7083 -0.2992 34 1 3.5301 5.3344 -1.8856 35 1 4.4583 1.3144 0.0132 36 1 4.4132 -1.3612 0.0086 37 1 1.6490 -2.8729 1.0205 38 1 0.5501 -2.3106 -1.6074 39 1 4.3334 -3.5100 -0.2007 40 1 2.5499 -5.0141 -0.8895 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12892148_10803936.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:52:56 Heat of formation + Delta-G solvation = -75.358418 kcal Electronic energy + Delta-G solvation = -22661.955248 eV Core-core repulsion = 19250.613069 eV Total energy + Delta-G solvation = -3411.342179 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.63031 -40.89643 -39.49211 -37.74448 -36.69665 -34.58657 -33.67314 -31.83825 -31.59118 -29.63356 -27.50245 -26.69473 -23.96919 -23.60639 -22.69058 -21.36519 -21.06077 -20.33738 -18.92247 -18.17189 -17.75280 -17.27745 -16.95140 -16.76295 -16.06274 -15.94308 -15.57561 -15.40776 -15.25477 -14.81009 -14.51310 -14.43776 -14.38097 -14.14649 -13.72345 -13.31272 -13.25518 -13.20815 -13.17764 -13.00602 -12.46364 -12.23229 -12.06776 -12.02407 -11.62015 -11.36240 -11.04655 -10.74783 -10.66373 -10.17298 -9.78698 -9.13363 -4.91367 0.34277 1.16877 1.51174 1.70002 1.75775 2.02479 2.29619 2.33533 3.31766 3.39536 3.55219 3.61148 3.72968 3.80116 3.94344 3.99512 4.10349 4.18531 4.28760 4.32818 4.37354 4.41484 4.44460 4.50472 4.50956 4.63870 4.71983 4.90005 4.97688 5.01935 5.03950 5.11052 5.13910 5.16519 5.24858 5.34305 5.47513 5.70491 5.94775 6.10777 6.46555 6.58208 6.95445 7.11032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.402 5.402 3 C -0.081 4.081 4 C 0.586 3.414 5 O -0.585 6.585 6 N -0.702 5.702 7 C 0.153 3.847 8 H 0.070 0.930 9 C -0.119 4.119 10 C -0.114 4.114 11 C 0.104 3.896 12 H 0.067 0.933 13 O -0.581 6.581 14 C -0.145 4.145 15 C -0.115 4.115 16 C -0.125 4.125 17 C -0.213 4.213 18 C 0.015 3.985 19 C -0.059 4.059 20 O -0.555 6.555 21 Si 0.812 3.188 22 H 0.086 0.914 23 H 0.096 0.904 24 H 0.079 0.921 25 H 0.415 0.585 26 H 0.040 0.960 27 H 0.066 0.934 28 H 0.081 0.919 29 H 0.064 0.936 30 H 0.392 0.608 31 H 0.090 0.910 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.172 0.828 36 H 0.162 0.838 37 H 0.112 0.888 38 H 0.394 0.606 39 H -0.274 1.274 40 H -0.294 1.294 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.667 1.866 -4.946 7.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.075 5.075 3 C -0.194 4.194 4 C 0.375 3.625 5 O -0.467 6.467 6 N -0.353 5.353 7 C 0.049 3.951 8 H 0.088 0.912 9 C -0.157 4.157 10 C -0.152 4.152 11 C 0.045 3.955 12 H 0.085 0.915 13 O -0.389 6.389 14 C -0.183 4.183 15 C -0.153 4.153 16 C -0.151 4.151 17 C -0.237 4.237 18 C -0.103 4.103 19 C -0.167 4.167 20 O -0.362 6.362 21 Si 0.714 3.286 22 H 0.105 0.895 23 H 0.114 0.886 24 H 0.098 0.902 25 H 0.252 0.748 26 H 0.059 0.941 27 H 0.085 0.915 28 H 0.100 0.900 29 H 0.082 0.918 30 H 0.242 0.758 31 H 0.109 0.891 32 H 0.095 0.905 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.189 0.811 36 H 0.180 0.820 37 H 0.130 0.870 38 H 0.244 0.756 39 H -0.200 1.200 40 H -0.222 1.222 Dipole moment (debyes) X Y Z Total from point charges 3.392 0.839 -3.895 5.233 hybrid contribution 0.067 0.530 0.563 0.776 sum 3.460 1.369 -3.332 4.995 Atomic orbital electron populations 1.22291 0.75552 1.04585 1.04537 1.43906 1.07211 1.04393 1.51968 1.20179 0.91398 0.87289 1.20523 1.17220 0.85378 0.84314 0.75552 1.90765 1.17871 1.85409 1.52665 1.45632 1.10116 1.05710 1.73842 1.21004 0.98481 0.79372 0.96287 0.91210 1.21725 1.01055 0.95900 0.97055 1.21546 0.97806 0.94236 1.01595 1.21793 0.85421 0.98275 0.90008 0.91523 1.86499 1.23740 1.76102 1.52573 1.22206 1.03192 0.95758 0.97181 1.21679 0.97832 0.94690 1.01066 1.21649 0.94462 0.95579 1.03422 1.20908 0.95381 0.95689 1.11728 1.21448 0.91152 0.89477 1.08265 1.25220 0.94958 0.94073 1.02495 1.86465 1.30218 1.89087 1.30419 0.92951 0.73491 0.74041 0.88127 0.89534 0.88569 0.90243 0.74802 0.94149 0.91486 0.90041 0.91761 0.75830 0.89119 0.90478 0.90036 0.90296 0.81092 0.82018 0.87026 0.75565 1.19958 1.22176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.30 9.40 127.77 1.20 1.50 16 2 N -0.40 -2.13 3.16 -519.69 -1.64 -3.77 16 3 C -0.08 -0.47 6.89 40.35 0.28 -0.19 16 4 C 0.59 4.66 7.73 86.45 0.67 5.33 16 5 O -0.58 -8.64 14.28 -4.31 -0.06 -8.70 16 6 N -0.70 -1.12 5.06 -446.51 -2.26 -3.38 16 7 C 0.15 0.23 2.41 44.99 0.11 0.34 16 8 H 0.07 0.36 7.66 -2.39 -0.02 0.35 16 9 C -0.12 -0.48 5.35 30.59 0.16 -0.32 16 10 C -0.11 -0.15 5.66 30.59 0.17 0.02 16 11 C 0.10 -0.27 3.77 30.59 0.12 -0.15 16 12 H 0.07 -0.29 8.14 -2.39 -0.02 -0.31 16 13 O -0.58 0.72 11.97 -148.98 -1.78 -1.07 16 14 C -0.15 0.79 5.64 30.61 0.17 0.97 16 15 C -0.11 0.47 5.25 30.61 0.16 0.63 16 16 C -0.12 -0.12 10.35 22.57 0.23 0.12 16 17 C -0.21 -0.15 9.37 22.01 0.21 0.06 16 18 C 0.01 0.03 6.14 41.34 0.25 0.28 16 19 C -0.06 0.06 2.88 71.23 0.21 0.26 16 20 O -0.55 0.65 10.43 -148.98 -1.55 -0.91 16 21 Si 0.81 -3.19 31.29 68.60 2.15 -1.04 16 22 H 0.09 0.12 8.14 -2.39 -0.02 0.10 16 23 H 0.10 0.29 6.90 -2.39 -0.02 0.28 16 24 H 0.08 0.70 6.16 -2.39 -0.01 0.69 16 25 H 0.41 -1.60 7.50 -92.71 -0.70 -2.30 16 26 H 0.04 0.38 8.08 -2.39 -0.02 0.36 16 27 H 0.07 0.36 7.68 -2.39 -0.02 0.34 16 28 H 0.08 0.02 8.14 -2.39 -0.02 0.00 16 29 H 0.06 0.19 8.14 -2.38 -0.02 0.17 16 30 H 0.39 -3.56 9.08 -74.06 -0.67 -4.23 16 31 H 0.09 -0.78 8.14 -2.39 -0.02 -0.80 16 32 H 0.08 -0.40 8.14 -2.39 -0.02 -0.42 16 33 H 0.08 -0.37 7.68 -2.39 -0.02 -0.39 16 34 H 0.08 -0.43 8.14 -2.39 -0.02 -0.45 16 35 H 0.17 -0.93 7.45 -2.91 -0.02 -0.95 16 36 H 0.16 -0.44 6.62 -2.91 -0.02 -0.46 16 37 H 0.11 0.02 7.96 -2.38 -0.02 0.00 16 38 H 0.39 -3.17 8.70 -74.05 -0.64 -3.82 16 39 H -0.27 0.09 6.76 99.48 0.67 0.76 16 40 H -0.29 -0.87 7.11 99.48 0.71 -0.16 16 Total: 0.00 -19.11 319.39 -2.15 -21.26 By element: Atomic # 1 Polarization: -10.31 SS G_CDS: -0.93 Total: -11.25 kcal Atomic # 6 Polarization: 4.91 SS G_CDS: 3.94 Total: 8.85 kcal Atomic # 7 Polarization: -3.25 SS G_CDS: -3.90 Total: -7.15 kcal Atomic # 8 Polarization: -7.27 SS G_CDS: -3.40 Total: -10.67 kcal Atomic # 14 Polarization: -3.19 SS G_CDS: 2.15 Total: -1.04 kcal Total: -19.11 -2.15 -21.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12892148_10803936.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.096 kcal (2) G-P(sol) polarization free energy of solvation -19.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds