Wall clock time and date at job start Sat Mar 6 2021 23:52:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86298 * 109.47092 * 2 1 4 4 C 1.50703 * 109.47210 * 120.00202 * 2 1 3 5 5 C 1.36449 * 120.29375 * 120.01848 * 4 2 1 6 6 C 1.40089 * 119.25233 * 179.97438 * 5 4 2 7 7 C 1.40855 * 132.86748 * 180.02562 * 6 5 4 8 8 C 1.46570 * 126.57538 * 359.96097 * 7 6 5 9 9 O 1.21719 * 120.00460 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99912 * 180.02562 * 8 7 6 11 11 C 1.46494 * 120.00230 * 179.97438 * 10 8 7 12 12 H 1.08995 * 109.47170 * 34.99775 * 11 10 8 13 13 C 1.52998 * 109.47479 * 154.99921 * 11 10 8 14 14 C 1.53005 * 109.47049 * 59.99623 * 13 11 10 15 15 C 1.53000 * 109.46949 * 60.00440 * 14 13 11 16 16 H 1.08997 * 109.47496 * 59.99463 * 15 14 13 17 17 O 1.42896 * 109.47277 * 179.97438 * 15 14 13 18 18 C 1.53010 * 109.47185 * 299.99800 * 15 14 13 19 19 C 1.52997 * 109.46836 * 60.00123 * 18 15 14 20 20 C 1.40554 * 106.84381 * 179.97438 * 7 6 5 21 21 N 1.30744 * 108.73975 * 0.02562 * 20 7 6 22 22 N 1.36576 * 120.22869 * 359.97438 * 6 5 4 23 23 C 1.36236 * 120.08398 * 0.02562 * 22 6 5 24 24 C 1.35190 * 120.70558 * 359.97438 * 23 22 6 25 25 H 0.96705 * 114.00011 * 59.99517 * 1 2 3 26 26 H 1.09003 * 109.46774 * 239.99893 * 2 1 3 27 27 H 1.48500 * 110.00563 * 298.68175 * 3 2 1 28 28 H 1.48499 * 110.00025 * 60.00728 * 3 2 1 29 29 H 1.07998 * 120.37247 * 359.95711 * 5 4 2 30 30 H 0.97009 * 119.99867 * 359.97438 * 10 8 7 31 31 H 1.08994 * 109.47351 * 179.97438 * 13 11 10 32 32 H 1.08995 * 109.47099 * 299.99879 * 13 11 10 33 33 H 1.08997 * 109.47314 * 180.02562 * 14 13 11 34 34 H 1.08994 * 109.47357 * 300.00645 * 14 13 11 35 35 H 0.96700 * 114.00346 * 179.97438 * 17 15 14 36 36 H 1.08998 * 109.47026 * 179.97438 * 18 15 14 37 37 H 1.08997 * 109.46629 * 300.00194 * 18 15 14 38 38 H 1.08997 * 109.47136 * 180.02562 * 19 18 15 39 39 H 1.08994 * 109.47351 * 59.99813 * 19 18 15 40 40 H 1.07992 * 125.62729 * 180.26707 * 20 7 6 41 41 H 1.08000 * 119.64521 * 179.97438 * 23 22 6 42 42 H 1.07995 * 119.84128 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7105 1.2305 5 6 2.7165 -1.8201 1.1122 6 6 3.1718 -2.4632 2.2705 7 6 3.9766 -3.5996 2.4821 8 6 4.5772 -4.4491 1.4497 9 8 4.3975 -4.1959 0.2728 10 7 5.3284 -5.5107 1.8035 11 6 5.9282 -6.3601 0.7716 12 1 6.2154 -5.7466 -0.0823 13 6 7.1671 -7.0552 1.3398 14 6 6.7640 -7.9164 2.5385 15 6 5.7485 -8.9697 2.0912 16 1 6.1947 -9.6017 1.3234 17 8 5.3724 -9.7744 3.2106 18 6 4.5095 -8.2746 1.5229 19 6 4.9126 -7.4135 0.3243 20 6 4.0930 -3.7629 3.8733 21 7 3.4192 -2.8118 4.4657 22 7 2.8323 -1.9819 3.5027 23 6 2.0479 -0.8732 3.6105 24 6 1.5971 -0.2366 2.5064 25 1 -0.3933 0.4418 -0.7650 26 1 1.7923 -0.5139 -0.8900 27 1 1.5879 2.4587 -1.2242 28 1 1.5616 2.4678 1.2086 29 1 2.9836 -2.1986 0.1366 30 1 5.4719 -5.7123 2.7415 31 1 7.6131 -7.6875 0.5722 32 1 7.8906 -6.3049 1.6584 33 1 7.6467 -8.4112 2.9436 34 1 6.3177 -7.2844 3.3062 35 1 4.7289 -10.4648 3.0002 36 1 3.7862 -9.0251 1.2039 37 1 4.0633 -7.6427 2.2908 38 1 4.0301 -6.9180 -0.0803 39 1 5.3589 -8.0455 -0.4434 40 1 4.6504 -4.5427 4.3707 41 1 1.7834 -0.4990 4.5885 42 1 0.9765 0.6413 2.6081 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12892148_11618758.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:52:59 Heat of formation + Delta-G solvation = -16.442915 kcal Electronic energy + Delta-G solvation = -26798.533354 eV Core-core repulsion = 22939.641610 eV Total energy + Delta-G solvation = -3858.891744 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.33156 -41.10983 -39.45076 -39.07689 -37.39328 -36.90326 -34.36850 -33.86611 -32.19657 -31.84514 -30.71071 -29.35158 -27.26120 -25.08382 -23.97569 -23.72373 -23.18527 -22.80667 -21.44631 -20.16762 -19.30319 -18.56982 -18.20111 -17.91126 -17.66910 -16.98170 -16.88015 -16.69232 -16.39402 -15.92281 -15.67142 -15.58358 -15.40443 -14.83472 -14.56402 -14.46661 -14.19027 -14.02739 -13.96390 -13.85895 -13.30691 -13.23135 -13.05298 -12.77792 -12.68786 -12.19943 -12.15787 -12.10483 -11.96948 -11.71839 -11.60994 -11.16525 -10.93456 -10.85668 -10.72999 -10.26232 -10.03404 -8.81046 -4.90326 -0.59606 -0.14545 0.99756 1.01800 1.21044 1.60573 1.86301 2.04819 2.27066 2.49388 3.00181 3.15193 3.28252 3.48994 3.62144 3.69233 3.70081 3.75518 3.86018 3.95150 4.08921 4.10530 4.19578 4.24467 4.33042 4.36413 4.42904 4.47853 4.54387 4.56315 4.66596 4.75085 4.91068 5.05304 5.07635 5.10088 5.13853 5.15144 5.18242 5.26389 5.32647 5.35847 5.60316 5.63320 6.26686 6.52567 6.61727 6.87548 7.32127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.551 6.551 2 C -0.087 4.087 3 Si 0.764 3.236 4 C -0.020 4.020 5 C -0.110 4.110 6 C 0.152 3.848 7 C -0.338 4.338 8 C 0.600 3.400 9 O -0.587 6.587 10 N -0.709 5.709 11 C 0.146 3.854 12 H 0.079 0.921 13 C -0.116 4.116 14 C -0.115 4.115 15 C 0.104 3.896 16 H 0.064 0.936 17 O -0.588 6.588 18 C -0.144 4.144 19 C -0.125 4.125 20 C 0.128 3.872 21 N -0.339 5.339 22 N -0.273 5.273 23 C 0.112 3.888 24 C -0.146 4.146 25 H 0.401 0.599 26 H 0.095 0.905 27 H -0.275 1.275 28 H -0.274 1.274 29 H 0.158 0.842 30 H 0.407 0.593 31 H 0.094 0.906 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.392 0.608 36 H 0.068 0.932 37 H 0.060 0.940 38 H 0.048 0.952 39 H 0.086 0.914 40 H 0.230 0.770 41 H 0.203 0.797 42 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.931 0.879 -0.910 2.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.362 6.362 2 C -0.194 4.194 3 Si 0.665 3.335 4 C -0.025 4.025 5 C -0.130 4.130 6 C 0.031 3.969 7 C -0.352 4.352 8 C 0.390 3.610 9 O -0.469 6.469 10 N -0.361 5.361 11 C 0.042 3.958 12 H 0.097 0.903 13 C -0.153 4.153 14 C -0.153 4.153 15 C 0.045 3.955 16 H 0.082 0.918 17 O -0.396 6.396 18 C -0.182 4.182 19 C -0.164 4.164 20 C -0.052 4.052 21 N -0.160 5.160 22 N -0.037 5.037 23 C -0.014 4.014 24 C -0.167 4.167 25 H 0.252 0.748 26 H 0.113 0.887 27 H -0.200 1.200 28 H -0.200 1.200 29 H 0.175 0.825 30 H 0.245 0.755 31 H 0.113 0.887 32 H 0.104 0.896 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.241 0.759 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.067 0.933 39 H 0.105 0.895 40 H 0.246 0.754 41 H 0.219 0.781 42 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 1.826 2.350 0.359 2.998 hybrid contribution -1.483 -1.020 -1.158 2.141 sum 0.343 1.330 -0.799 1.589 Atomic orbital electron populations 1.86526 1.17338 1.80949 1.51377 1.24951 0.84900 1.12362 0.97185 0.93496 0.90731 0.70898 0.78418 1.19605 0.94293 0.93418 0.95233 1.20642 0.99838 0.94791 0.97740 1.19528 0.96051 0.94661 0.86702 1.19734 1.17063 1.04236 0.94203 1.16950 0.77457 0.79770 0.86809 1.90740 1.62930 1.73354 1.19855 1.45742 1.51821 1.27777 1.10799 1.20979 0.92948 0.90893 0.90969 0.90318 1.21762 0.96001 0.99261 0.98313 1.21499 0.98845 0.96625 0.98287 1.21876 0.94043 0.91770 0.87764 0.91778 1.86471 1.66124 1.50110 1.36885 1.22172 0.98401 0.99555 0.98069 1.21835 0.99267 0.97243 0.98054 1.24546 0.93558 0.95693 0.91443 1.77573 1.19596 1.07274 1.11522 1.46284 1.32404 1.19444 1.05542 1.22117 0.91458 0.84564 1.03264 1.21043 1.02697 1.02956 0.90010 0.74811 0.88717 1.20019 1.19994 0.82472 0.75548 0.88723 0.89600 0.90601 0.91307 0.75857 0.91334 0.92125 0.93293 0.89532 0.75427 0.78061 0.80599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.31 12.76 -148.98 -1.90 -1.59 16 2 C -0.09 0.19 2.81 71.24 0.20 0.39 16 3 Si 0.76 -3.46 31.96 68.60 2.19 -1.27 16 4 C -0.02 -0.03 4.53 -19.82 -0.09 -0.12 16 5 C -0.11 -0.61 9.35 22.30 0.21 -0.40 16 6 C 0.15 1.22 6.76 39.49 0.27 1.48 16 7 C -0.34 -2.36 6.17 -19.90 -0.12 -2.48 16 8 C 0.60 4.59 7.75 86.42 0.67 5.26 16 9 O -0.59 -8.25 15.37 -4.41 -0.07 -8.31 16 10 N -0.71 -0.57 4.22 -446.59 -1.89 -2.45 16 11 C 0.15 -0.05 2.78 45.00 0.13 0.08 16 12 H 0.08 0.24 7.57 -2.39 -0.02 0.23 16 13 C -0.12 0.57 5.61 30.60 0.17 0.75 16 14 C -0.11 0.41 5.40 30.60 0.17 0.58 16 15 C 0.10 -0.24 3.47 30.60 0.11 -0.14 16 16 H 0.06 -0.24 8.14 -2.39 -0.02 -0.26 16 17 O -0.59 -0.20 13.32 -148.98 -1.98 -2.19 16 18 C -0.14 0.20 5.39 30.60 0.16 0.36 16 19 C -0.13 0.00 5.60 30.60 0.17 0.17 16 20 C 0.13 0.40 11.44 85.42 0.98 1.37 16 21 N -0.34 -2.37 12.57 -56.62 -0.71 -3.09 16 22 N -0.27 -1.73 3.86 -187.28 -0.72 -2.45 16 23 C 0.11 0.07 11.17 83.31 0.93 1.00 16 24 C -0.15 0.06 8.67 22.03 0.19 0.25 16 25 H 0.40 -3.42 8.74 -74.05 -0.65 -4.07 16 26 H 0.09 -0.42 7.71 -2.39 -0.02 -0.44 16 27 H -0.27 0.18 7.11 99.48 0.71 0.88 16 28 H -0.27 0.01 7.07 99.48 0.70 0.71 16 29 H 0.16 0.99 7.01 -2.91 -0.02 0.97 16 30 H 0.41 -1.48 5.79 -92.70 -0.54 -2.02 16 31 H 0.09 -0.64 8.14 -2.39 -0.02 -0.66 16 32 H 0.09 -0.50 8.14 -2.39 -0.02 -0.52 16 33 H 0.08 -0.23 8.14 -2.39 -0.02 -0.25 16 34 H 0.07 -0.27 6.50 -2.39 -0.02 -0.28 16 35 H 0.39 -2.53 9.08 -74.06 -0.67 -3.21 16 36 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 37 H 0.06 0.06 7.60 -2.39 -0.02 0.04 16 38 H 0.05 0.26 8.14 -2.39 -0.02 0.24 16 39 H 0.09 -0.23 8.14 -2.39 -0.02 -0.25 16 40 H 0.23 -1.32 7.46 -2.91 -0.02 -1.34 16 41 H 0.20 -1.12 8.06 -2.91 -0.02 -1.15 16 42 H 0.18 -0.74 7.52 -2.91 -0.02 -0.76 16 Total: 0.00 -23.40 345.18 -1.68 -25.08 By element: Atomic # 1 Polarization: -11.55 SS G_CDS: -0.74 Total: -12.29 kcal Atomic # 6 Polarization: 4.42 SS G_CDS: 4.14 Total: 8.56 kcal Atomic # 7 Polarization: -4.67 SS G_CDS: -3.32 Total: -7.99 kcal Atomic # 8 Polarization: -8.14 SS G_CDS: -3.95 Total: -12.09 kcal Atomic # 14 Polarization: -3.46 SS G_CDS: 2.19 Total: -1.27 kcal Total: -23.40 -1.68 -25.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12892148_11618758.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.642 kcal (2) G-P(sol) polarization free energy of solvation -23.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds