Wall clock time and date at job start Sat Mar 6 2021 23:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35656 * 117.00149 * 2 1 4 4 C 1.38395 * 120.12126 * 359.97438 * 3 2 1 5 5 C 1.38721 * 120.03649 * 180.02562 * 4 3 2 6 6 O 1.35722 * 119.86923 * 180.02562 * 5 4 3 7 7 C 1.42905 * 116.99402 * 359.97438 * 6 5 4 8 8 C 1.39141 * 120.27039 * 359.97438 * 5 4 3 9 9 C 1.50707 * 119.88012 * 180.02562 * 8 5 4 10 10 O 1.42903 * 109.46442 * 75.00424 * 9 8 5 11 11 Si 1.86293 * 109.47256 * 194.99991 * 9 8 5 12 12 C 1.37580 * 120.24249 * 0.29832 * 8 5 4 13 13 C 1.39825 * 119.96317 * 359.45804 * 12 8 5 14 14 C 1.47290 * 120.13536 * 180.29078 * 13 12 8 15 15 O 1.21623 * 119.99702 * 180.22308 * 14 13 12 16 16 N 1.34774 * 120.00255 * 0.22586 * 14 13 12 17 17 C 1.46510 * 119.99844 * 179.97438 * 16 14 13 18 18 H 1.09000 * 109.47177 * 324.99674 * 17 16 14 19 19 C 1.52999 * 109.47269 * 85.00186 * 17 16 14 20 20 C 1.52997 * 109.47320 * 179.97438 * 19 17 16 21 21 C 1.53005 * 109.46722 * 299.99718 * 20 19 17 22 22 H 1.09005 * 109.46708 * 179.97438 * 21 20 19 23 23 O 1.42900 * 109.47395 * 299.99802 * 21 20 19 24 24 C 1.52999 * 109.46993 * 60.00081 * 21 20 19 25 25 C 1.52997 * 109.47320 * 299.99552 * 24 21 20 26 26 H 1.08997 * 109.47364 * 300.00162 * 1 2 3 27 27 H 1.08997 * 109.47525 * 60.00100 * 1 2 3 28 28 H 1.09003 * 109.47369 * 180.02562 * 1 2 3 29 29 H 1.08011 * 119.98243 * 0.04263 * 4 3 2 30 30 H 1.09002 * 109.46532 * 180.02562 * 7 6 5 31 31 H 1.09002 * 109.46895 * 299.99848 * 7 6 5 32 32 H 1.09002 * 109.47184 * 60.00136 * 7 6 5 33 33 H 1.08999 * 109.47345 * 315.00494 * 9 8 5 34 34 H 0.96700 * 114.00311 * 60.00230 * 10 9 8 35 35 H 1.48501 * 109.99918 * 58.68485 * 11 9 8 36 36 H 1.48506 * 109.99973 * 180.02562 * 11 9 8 37 37 H 1.08007 * 120.02342 * 179.69992 * 12 8 5 38 38 H 0.96995 * 119.99865 * 359.97438 * 16 14 13 39 39 H 1.09002 * 109.46774 * 300.00060 * 19 17 16 40 40 H 1.09000 * 109.46948 * 59.99450 * 19 17 16 41 41 H 1.08994 * 109.46933 * 180.02562 * 20 19 17 42 42 H 1.09000 * 109.47140 * 59.99480 * 20 19 17 43 43 H 0.96702 * 113.99837 * 300.00653 * 23 21 20 44 44 H 1.09002 * 109.46774 * 179.97438 * 24 21 20 45 45 H 1.09000 * 109.47439 * 59.99890 * 24 21 20 46 46 H 1.09000 * 109.47140 * 300.00520 * 25 24 21 47 47 H 1.09003 * 109.47177 * 179.97438 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.2936 2.3710 -0.0005 5 6 1.9252 3.6060 -0.0011 6 8 1.1851 4.7437 -0.0011 7 6 -0.2359 4.5931 -0.0011 8 6 3.3145 3.6833 -0.0005 9 6 3.9916 5.0297 -0.0005 10 8 3.8935 5.6121 1.3008 11 14 5.7864 4.8223 -0.4544 12 6 4.0724 2.5351 -0.0057 13 6 3.4461 1.2849 0.0000 14 6 4.2538 0.0533 0.0010 15 8 3.7065 -1.0328 0.0019 16 7 5.5994 0.1298 0.0011 17 6 6.4028 -1.0955 0.0026 18 1 5.8980 -1.8602 0.5930 19 6 6.5775 -1.5926 -1.4337 20 6 7.4169 -2.8718 -1.4321 21 6 8.7898 -2.5799 -0.8230 22 1 9.3877 -3.4914 -0.8214 23 8 9.4511 -1.5772 -1.5970 24 6 8.6151 -2.0828 0.6134 25 6 7.7756 -0.8036 0.6118 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 0.2149 2.3164 -0.0003 30 1 -0.7055 5.5768 -0.0015 31 1 -0.5431 4.0438 -0.8911 32 1 -0.5431 4.0438 0.8889 33 1 3.5058 5.6807 -0.7275 34 1 4.3055 5.0855 1.9994 35 1 5.9020 4.1883 -1.7923 36 1 6.4655 6.1430 -0.4573 37 1 5.1505 2.5992 -0.0101 38 1 6.0359 0.9959 0.0001 39 1 5.5994 -1.8000 -1.8679 40 1 7.0822 -0.8279 -2.0240 41 1 7.5417 -3.2256 -2.4555 42 1 6.9125 -3.6366 -0.8417 43 1 9.5954 -1.8248 -2.5206 44 1 9.5932 -1.8753 1.0475 45 1 8.1107 -2.8476 1.2039 46 1 8.2800 -0.0388 0.0214 47 1 7.6508 -0.4497 1.6352 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12892148_12297780.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:53:04 Heat of formation + Delta-G solvation = -165.390233 kcal Electronic energy + Delta-G solvation = -30778.045112 eV Core-core repulsion = 26507.096628 eV Total energy + Delta-G solvation = -4270.948484 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 338.165 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.12669 -40.91898 -40.10624 -39.41435 -38.45352 -36.99076 -36.56409 -34.27133 -32.25803 -31.89666 -31.75205 -29.54114 -28.99544 -28.07159 -26.13536 -24.83086 -23.73417 -23.36328 -22.41550 -21.45938 -20.81720 -20.03061 -18.81835 -18.23442 -17.95870 -17.70208 -17.25483 -17.11315 -16.76109 -16.60802 -16.32466 -16.17328 -15.86909 -15.80029 -15.63297 -15.43355 -15.31434 -14.73943 -14.32787 -14.20982 -14.12025 -13.89418 -13.65785 -13.37005 -13.25858 -13.13980 -12.94940 -12.68301 -12.55676 -12.53665 -12.38261 -12.26529 -12.00947 -11.97415 -11.66795 -11.51653 -11.18314 -10.95435 -10.60946 -10.39621 -10.06131 -9.92633 -9.20419 -5.05674 -0.27300 0.06534 1.29510 1.63628 1.75445 1.98543 2.10073 2.11777 2.17773 2.60795 3.42371 3.46114 3.50837 3.59878 3.72596 3.76933 3.80226 3.86834 4.04287 4.10469 4.14561 4.16962 4.22306 4.24814 4.25879 4.27401 4.29566 4.45928 4.47507 4.53080 4.58266 4.61804 4.64583 4.72443 4.74184 4.88071 4.97471 5.00565 5.03708 5.11780 5.21436 5.22227 5.28332 5.34147 5.43531 5.59204 6.01606 6.27442 6.58379 6.83638 6.94587 7.28237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.304 6.304 3 C 0.217 3.783 4 C -0.311 4.311 5 C 0.212 3.788 6 O -0.314 6.314 7 C 0.012 3.988 8 C -0.204 4.204 9 C -0.059 4.059 10 O -0.553 6.553 11 Si 0.770 3.230 12 C 0.009 3.991 13 C -0.226 4.226 14 C 0.564 3.436 15 O -0.564 6.564 16 N -0.715 5.715 17 C 0.150 3.850 18 H 0.068 0.932 19 C -0.121 4.121 20 C -0.147 4.147 21 C 0.104 3.896 22 H 0.065 0.935 23 O -0.577 6.577 24 C -0.113 4.113 25 C -0.116 4.116 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.113 0.887 29 H 0.163 0.837 30 H 0.119 0.881 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.099 0.901 34 H 0.393 0.607 35 H -0.276 1.276 36 H -0.293 1.293 37 H 0.167 0.833 38 H 0.410 0.590 39 H 0.040 0.960 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.070 0.930 43 H 0.389 0.611 44 H 0.079 0.921 45 H 0.083 0.917 46 H 0.081 0.919 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.620 -0.135 1.011 1.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.214 6.214 3 C 0.168 3.832 4 C -0.331 4.331 5 C 0.164 3.836 6 O -0.225 6.225 7 C -0.082 4.082 8 C -0.205 4.205 9 C -0.168 4.168 10 O -0.361 6.361 11 Si 0.674 3.326 12 C -0.009 4.009 13 C -0.231 4.231 14 C 0.353 3.647 15 O -0.444 6.444 16 N -0.368 5.368 17 C 0.045 3.955 18 H 0.086 0.914 19 C -0.159 4.159 20 C -0.185 4.185 21 C 0.045 3.955 22 H 0.083 0.917 23 O -0.385 6.385 24 C -0.151 4.151 25 C -0.154 4.154 26 H 0.090 0.910 27 H 0.088 0.912 28 H 0.132 0.868 29 H 0.180 0.820 30 H 0.137 0.863 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.116 0.884 34 H 0.242 0.758 35 H -0.203 1.203 36 H -0.221 1.221 37 H 0.183 0.817 38 H 0.248 0.752 39 H 0.059 0.941 40 H 0.091 0.909 41 H 0.093 0.907 42 H 0.089 0.911 43 H 0.238 0.762 44 H 0.097 0.903 45 H 0.101 0.899 46 H 0.099 0.901 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.642 0.065 0.699 0.951 hybrid contribution -1.365 0.105 -0.931 1.656 sum -0.723 0.169 -0.232 0.778 Atomic orbital electron populations 1.23468 0.76566 1.05764 1.02605 1.86365 1.23160 1.25868 1.86039 1.18978 0.91130 0.84669 0.88436 1.21412 1.01997 0.90765 1.18890 1.18944 0.90989 0.84908 0.88744 1.86147 1.21086 1.28752 1.86541 1.23464 0.76284 1.05828 1.02614 1.19608 0.90907 0.96769 1.13234 1.25027 1.11139 0.91593 0.89048 1.86505 1.82647 1.50185 1.16725 0.94289 0.73785 0.81490 0.83035 1.20855 0.99678 0.88750 0.91610 1.19182 0.90809 0.93931 1.19141 1.18030 0.82594 0.88299 0.75823 1.90810 1.72365 1.30234 1.50995 1.45877 1.05023 1.10580 1.75274 1.20976 0.91609 0.86389 0.96501 0.91358 1.21753 0.99017 0.98350 0.96814 1.22197 0.96666 0.97422 1.02222 1.21809 0.91243 0.90793 0.91622 0.91703 1.86465 1.80392 1.44729 1.26906 1.21551 1.00939 0.97795 0.94781 1.21678 0.92748 0.99195 1.01783 0.90990 0.91176 0.86848 0.82008 0.86322 0.91289 0.91189 0.88366 0.75751 1.20254 1.22067 0.81659 0.75208 0.94116 0.90871 0.90704 0.91083 0.76155 0.90275 0.89863 0.90057 0.90085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.01 9.81 113.37 1.11 1.11 16 2 O -0.30 -2.71 8.56 -68.75 -0.59 -3.30 16 3 C 0.22 1.47 6.69 22.82 0.15 1.62 16 4 C -0.31 -0.79 8.01 22.42 0.18 -0.61 16 5 C 0.21 0.75 6.67 22.60 0.15 0.90 16 6 O -0.31 -1.07 9.80 -90.45 -0.89 -1.96 16 7 C 0.01 -0.05 9.80 113.37 1.11 1.06 16 8 C -0.20 -0.34 5.27 -19.80 -0.10 -0.44 16 9 C -0.06 -0.05 2.37 71.24 0.17 0.12 16 10 O -0.55 -0.84 12.88 -148.98 -1.92 -2.76 16 11 Si 0.77 -2.24 29.90 68.60 2.05 -0.19 16 12 C 0.01 0.00 8.14 22.50 0.18 0.18 16 13 C -0.23 -1.27 5.89 -20.00 -0.12 -1.39 16 14 C 0.56 4.77 7.72 86.62 0.67 5.44 16 15 O -0.56 -9.54 14.81 16.86 0.25 -9.29 16 16 N -0.72 -1.00 5.03 -445.90 -2.24 -3.24 16 17 C 0.15 0.24 2.46 44.99 0.11 0.35 16 18 H 0.07 0.41 7.58 -2.39 -0.02 0.39 16 19 C -0.12 -0.27 5.35 30.59 0.16 -0.11 16 20 C -0.15 0.17 5.64 30.59 0.17 0.34 16 21 C 0.10 -0.27 3.77 30.60 0.12 -0.15 16 22 H 0.07 -0.27 8.14 -2.38 -0.02 -0.29 16 23 O -0.58 0.90 11.97 -148.98 -1.78 -0.89 16 24 C -0.11 0.32 5.66 30.59 0.17 0.50 16 25 C -0.12 0.32 5.24 30.59 0.16 0.48 16 26 H 0.07 -0.29 7.66 -2.39 -0.02 -0.30 16 27 H 0.07 -0.26 7.66 -2.39 -0.02 -0.28 16 28 H 0.11 -0.30 8.14 -2.39 -0.02 -0.32 16 29 H 0.16 -0.39 4.50 -2.90 -0.01 -0.40 16 30 H 0.12 -0.81 8.14 -2.39 -0.02 -0.83 16 31 H 0.07 -0.43 7.65 -2.39 -0.02 -0.45 16 32 H 0.07 -0.43 7.65 -2.39 -0.02 -0.44 16 33 H 0.10 0.37 7.82 -2.39 -0.02 0.35 16 34 H 0.39 -2.83 8.70 -74.06 -0.64 -3.48 16 35 H -0.28 -0.36 7.11 99.48 0.71 0.35 16 36 H -0.29 -1.32 7.11 99.48 0.71 -0.61 16 37 H 0.17 -1.22 3.42 -2.91 -0.01 -1.23 16 38 H 0.41 -2.11 6.62 -92.71 -0.61 -2.72 16 39 H 0.04 0.31 8.14 -2.39 -0.02 0.29 16 40 H 0.07 0.12 7.68 -2.39 -0.02 0.10 16 41 H 0.07 -0.20 8.14 -2.39 -0.02 -0.22 16 42 H 0.07 -0.02 8.14 -2.39 -0.02 -0.04 16 43 H 0.39 -3.02 9.08 -74.06 -0.67 -3.69 16 44 H 0.08 -0.25 8.14 -2.39 -0.02 -0.27 16 45 H 0.08 -0.32 8.14 -2.39 -0.02 -0.34 16 46 H 0.08 -0.22 7.68 -2.39 -0.02 -0.24 16 47 H 0.08 -0.37 8.14 -2.39 -0.02 -0.39 16 Total: 0.00 -25.71 372.62 -1.58 -27.29 By element: Atomic # 1 Polarization: -14.20 SS G_CDS: -0.86 Total: -15.06 kcal Atomic # 6 Polarization: 5.00 SS G_CDS: 4.40 Total: 9.40 kcal Atomic # 7 Polarization: -1.00 SS G_CDS: -2.24 Total: -3.24 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: -4.93 Total: -18.20 kcal Atomic # 14 Polarization: -2.24 SS G_CDS: 2.05 Total: -0.19 kcal Total: -25.71 -1.58 -27.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12892148_12297780.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.105 kcal (2) G-P(sol) polarization free energy of solvation -25.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds