Wall clock time and date at job start Sat Mar 6 2021 23:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86301 * 109.47259 * 2 1 4 4 C 1.50697 * 109.46996 * 120.00351 * 2 1 3 5 5 C 1.38238 * 120.00008 * 244.72486 * 4 2 1 6 6 C 1.38235 * 120.00181 * 179.80862 * 5 4 2 7 7 C 1.38232 * 119.99720 * 0.39527 * 6 5 4 8 8 C 1.50703 * 119.99482 * 179.83265 * 7 6 5 9 9 C 1.50696 * 109.47390 * 270.02228 * 8 7 6 10 10 O 1.21291 * 119.99936 * 0.02562 * 9 8 7 11 11 N 1.34770 * 120.00450 * 180.02562 * 9 8 7 12 12 C 1.46507 * 120.00496 * 180.02562 * 11 9 8 13 13 H 1.08996 * 109.46762 * 324.99577 * 12 11 9 14 14 C 1.52999 * 109.47187 * 84.99348 * 12 11 9 15 15 C 1.52992 * 109.47109 * 180.02562 * 14 12 11 16 16 C 1.53003 * 109.47646 * 300.00566 * 15 14 12 17 17 H 1.08998 * 109.47525 * 179.97438 * 16 15 14 18 18 O 1.42898 * 109.46827 * 299.99846 * 16 15 14 19 19 C 1.53000 * 109.46855 * 59.99323 * 16 15 14 20 20 C 1.52993 * 109.47544 * 300.00177 * 19 16 15 21 21 C 1.38228 * 120.00287 * 359.85775 * 7 6 5 22 22 C 1.38234 * 120.00438 * 64.99275 * 4 2 1 23 23 H 0.96696 * 114.00036 * 299.99991 * 1 2 3 24 24 H 1.09001 * 109.47103 * 239.99639 * 2 1 3 25 25 H 1.48502 * 109.99925 * 178.68072 * 3 2 1 26 26 H 1.48497 * 109.99842 * 299.99834 * 3 2 1 27 27 H 1.07998 * 119.99418 * 0.02562 * 5 4 2 28 28 H 1.08001 * 119.99731 * 180.23256 * 6 5 4 29 29 H 1.08992 * 109.47492 * 30.02638 * 8 7 6 30 30 H 1.09006 * 109.46967 * 150.02608 * 8 7 6 31 31 H 0.97007 * 119.99992 * 359.97438 * 11 9 8 32 32 H 1.08997 * 109.47296 * 300.00673 * 14 12 11 33 33 H 1.09007 * 109.46849 * 60.00775 * 14 12 11 34 34 H 1.09003 * 109.47457 * 180.02562 * 15 14 12 35 35 H 1.09006 * 109.47309 * 60.00287 * 15 14 12 36 36 H 0.96700 * 114.00461 * 299.99611 * 18 16 15 37 37 H 1.09007 * 109.46941 * 180.02562 * 19 16 15 38 38 H 1.09006 * 109.46837 * 60.01052 * 19 16 15 39 39 H 1.08997 * 109.47773 * 300.00178 * 20 19 16 40 40 H 1.09008 * 109.47183 * 179.97438 * 20 19 16 41 41 H 1.08003 * 120.00447 * 179.97438 * 21 7 6 42 42 H 1.08002 * 119.99628 * 359.97438 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 6 1.9313 -0.7105 1.2304 5 6 2.6436 -0.0136 2.1885 6 6 3.1010 -0.6645 3.3191 7 6 2.8531 -2.0139 3.4876 8 6 3.3550 -2.7241 4.7184 9 6 4.7361 -3.2673 4.4568 10 8 5.2615 -3.0943 3.3774 11 7 5.3876 -3.9454 5.4223 12 6 6.7306 -4.4729 5.1682 13 1 6.8043 -4.7938 4.1292 14 6 7.7673 -3.3809 5.4395 15 6 9.1697 -3.9317 5.1735 16 6 9.4324 -5.1246 6.0949 17 1 10.4314 -5.5172 5.9051 18 8 9.3362 -4.7043 7.4573 19 6 8.3956 -6.2165 5.8237 20 6 6.9933 -5.6658 6.0897 21 6 2.1454 -2.7119 2.5271 22 6 1.6846 -2.0602 1.3984 23 1 -0.3933 0.4417 0.7650 24 1 1.7924 -0.5139 -0.8900 25 1 3.5347 1.7702 0.0321 26 1 1.5616 2.4678 -1.2085 27 1 2.8398 1.0400 2.0554 28 1 3.6543 -0.1191 4.0694 29 1 3.3921 -2.0236 5.5525 30 1 2.6819 -3.5458 4.9636 31 1 4.9677 -4.0835 6.2858 32 1 7.5804 -2.5313 4.7828 33 1 7.6936 -3.0600 6.4786 34 1 9.9083 -3.1538 5.3672 35 1 9.2431 -4.2523 4.1343 36 1 9.9656 -4.0117 7.7008 37 1 8.5825 -7.0662 6.4804 38 1 8.4691 -6.5371 4.7844 39 1 6.9198 -5.3452 7.1289 40 1 6.2546 -6.4437 5.8960 41 1 1.9520 -3.7663 2.6585 42 1 1.1315 -2.6055 0.6479 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12892148_12335836.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:53:10 Heat of formation + Delta-G solvation = -105.581357 kcal Electronic energy + Delta-G solvation = -23208.372992 eV Core-core repulsion = 19732.920018 eV Total energy + Delta-G solvation = -3475.452974 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 292.151 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.36129 -40.48553 -39.54767 -37.66353 -36.63273 -34.39234 -33.88130 -31.94821 -31.84663 -30.47804 -28.94162 -25.78512 -23.85350 -23.80826 -23.39165 -22.03994 -21.36876 -20.75650 -18.47219 -18.15981 -17.75496 -17.50488 -16.97474 -16.70810 -16.38074 -16.18778 -16.02725 -15.72009 -15.41663 -14.93946 -14.72943 -14.53043 -14.39960 -14.16219 -14.00819 -13.63197 -13.27420 -13.23715 -13.08007 -13.00571 -12.80168 -12.44661 -12.27158 -12.05873 -12.01690 -11.72760 -11.60975 -11.26795 -11.03612 -10.68122 -10.45297 -10.05780 -9.88614 -9.62700 -5.04909 0.22990 0.44211 1.28359 1.61187 1.63757 1.92443 2.16057 2.78009 3.38271 3.49719 3.62731 3.65686 3.71537 3.78975 3.89832 3.97914 4.03381 4.04663 4.09240 4.21290 4.34007 4.38536 4.44847 4.46075 4.47862 4.49557 4.60565 4.65222 4.70967 4.88199 4.95879 5.01122 5.03486 5.07695 5.12714 5.14190 5.25162 5.35804 5.36975 5.52383 5.53901 5.58436 6.00747 6.56698 6.75372 6.88909 7.27423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.555 6.555 2 C -0.076 4.076 3 Si 0.782 3.218 4 C -0.129 4.129 5 C -0.121 4.121 6 C -0.110 4.110 7 C -0.071 4.071 8 C -0.098 4.098 9 C 0.512 3.488 10 O -0.581 6.581 11 N -0.717 5.717 12 C 0.148 3.852 13 H 0.061 0.939 14 C -0.117 4.117 15 C -0.148 4.148 16 C 0.105 3.895 17 H 0.065 0.935 18 O -0.577 6.577 19 C -0.114 4.114 20 C -0.114 4.114 21 C -0.116 4.116 22 C -0.109 4.109 23 H 0.395 0.605 24 H 0.100 0.900 25 H -0.293 1.293 26 H -0.297 1.297 27 H 0.143 0.857 28 H 0.142 0.858 29 H 0.133 0.867 30 H 0.129 0.871 31 H 0.416 0.584 32 H 0.042 0.958 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.391 0.609 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.073 0.927 41 H 0.131 0.869 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.007 0.100 7.516 7.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.363 6.363 2 C -0.185 4.185 3 Si 0.688 3.312 4 C -0.129 4.129 5 C -0.139 4.139 6 C -0.128 4.128 7 C -0.071 4.071 8 C -0.137 4.137 9 C 0.300 3.700 10 O -0.461 6.461 11 N -0.368 5.368 12 C 0.043 3.957 13 H 0.080 0.920 14 C -0.156 4.156 15 C -0.187 4.187 16 C 0.046 3.954 17 H 0.083 0.917 18 O -0.385 6.385 19 C -0.152 4.152 20 C -0.152 4.152 21 C -0.134 4.134 22 C -0.127 4.127 23 H 0.245 0.755 24 H 0.117 0.883 25 H -0.221 1.221 26 H -0.225 1.225 27 H 0.160 0.840 28 H 0.160 0.840 29 H 0.151 0.849 30 H 0.147 0.853 31 H 0.253 0.747 32 H 0.061 0.939 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.240 0.760 37 H 0.095 0.905 38 H 0.100 0.900 39 H 0.097 0.903 40 H 0.092 0.908 41 H 0.149 0.851 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 0.446 0.038 5.804 5.821 hybrid contribution 0.536 -0.332 -0.330 0.711 sum 0.982 -0.294 5.474 5.569 Atomic orbital electron populations 1.86460 1.17116 1.82237 1.50477 1.25187 0.85364 1.10964 0.97020 0.93751 0.77507 0.75299 0.84621 1.20403 1.00271 0.95127 0.97105 1.21156 0.98489 1.00035 0.94197 1.21236 0.99077 0.94342 0.98167 1.19576 0.97391 0.94036 0.96105 1.20765 0.92621 1.02805 0.97528 1.21067 0.88093 0.77322 0.83544 1.90738 1.69901 1.59038 1.26406 1.46017 1.17520 1.56212 1.17091 1.20906 0.81536 0.93823 0.99457 0.92036 1.21719 0.94469 0.97526 1.01893 1.22208 0.96936 0.98951 1.00579 1.21784 0.98564 0.93597 0.81453 0.91719 1.86464 1.63850 1.60901 1.27311 1.21558 0.93592 0.97569 1.02511 1.21631 0.97363 0.96237 0.99923 1.21230 0.98116 1.00214 0.93872 1.21091 0.99432 0.94248 0.97898 0.75463 0.88268 1.22053 1.22481 0.83979 0.84049 0.84899 0.85314 0.74703 0.93900 0.90693 0.90489 0.91360 0.76013 0.90479 0.90050 0.90325 0.90800 0.85127 0.86006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -1.55 12.83 -148.98 -1.91 -3.47 16 2 C -0.08 -0.23 2.80 71.23 0.20 -0.03 16 3 Si 0.78 0.48 29.80 68.60 2.04 2.52 16 4 C -0.13 -0.53 5.35 -19.87 -0.11 -0.64 16 5 C -0.12 -0.26 8.67 22.27 0.19 -0.06 16 6 C -0.11 -0.20 9.70 22.27 0.22 0.02 16 7 C -0.07 -0.14 4.37 -19.87 -0.09 -0.23 16 8 C -0.10 0.39 5.83 29.10 0.17 0.56 16 9 C 0.51 1.36 7.79 87.66 0.68 2.05 16 10 O -0.58 -7.63 15.70 -3.06 -0.05 -7.67 16 11 N -0.72 1.47 5.08 -442.52 -2.25 -0.78 16 12 C 0.15 0.08 2.45 44.99 0.11 0.19 16 13 H 0.06 0.36 7.58 -2.39 -0.02 0.34 16 14 C -0.12 -0.10 5.35 30.59 0.16 0.07 16 15 C -0.15 0.23 5.64 30.59 0.17 0.40 16 16 C 0.10 -0.26 3.77 30.60 0.12 -0.15 16 17 H 0.06 -0.26 8.14 -2.39 -0.02 -0.27 16 18 O -0.58 1.01 11.97 -148.98 -1.78 -0.77 16 19 C -0.11 0.27 5.66 30.59 0.17 0.44 16 20 C -0.11 0.28 5.25 30.59 0.16 0.45 16 21 C -0.12 -0.45 9.70 22.27 0.22 -0.23 16 22 C -0.11 -0.59 9.69 22.27 0.22 -0.37 16 23 H 0.40 -2.28 8.70 -74.06 -0.64 -2.92 16 24 H 0.10 0.51 7.96 -2.39 -0.02 0.49 16 25 H -0.29 -1.88 7.11 99.48 0.71 -1.17 16 26 H -0.30 -2.21 7.11 99.48 0.71 -1.50 16 27 H 0.14 -0.34 4.91 -2.91 -0.01 -0.35 16 28 H 0.14 -0.35 8.06 -2.91 -0.02 -0.38 16 29 H 0.13 -1.27 8.08 -2.39 -0.02 -1.28 16 30 H 0.13 -1.13 8.09 -2.38 -0.02 -1.15 16 31 H 0.42 -3.45 8.60 -92.70 -0.80 -4.24 16 32 H 0.04 0.24 8.14 -2.39 -0.02 0.22 16 33 H 0.07 0.00 7.68 -2.38 -0.02 -0.02 16 34 H 0.08 -0.25 8.14 -2.39 -0.02 -0.27 16 35 H 0.07 -0.01 8.14 -2.38 -0.02 -0.03 16 36 H 0.39 -3.24 9.08 -74.06 -0.67 -3.91 16 37 H 0.08 -0.18 8.14 -2.38 -0.02 -0.20 16 38 H 0.08 -0.25 8.14 -2.38 -0.02 -0.26 16 39 H 0.08 -0.17 7.68 -2.39 -0.02 -0.18 16 40 H 0.07 -0.26 8.14 -2.38 -0.02 -0.28 16 41 H 0.13 0.12 8.06 -2.91 -0.02 0.09 16 42 H 0.12 0.59 8.06 -2.91 -0.02 0.57 16 Total: 0.00 -22.05 341.16 -2.38 -24.44 By element: Atomic # 1 Polarization: -15.68 SS G_CDS: -1.03 Total: -16.71 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: 2.60 Total: 2.45 kcal Atomic # 7 Polarization: 1.47 SS G_CDS: -2.25 Total: -0.78 kcal Atomic # 8 Polarization: -8.17 SS G_CDS: -3.74 Total: -11.91 kcal Atomic # 14 Polarization: 0.48 SS G_CDS: 2.04 Total: 2.52 kcal Total: -22.05 -2.38 -24.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12892148_12335836.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.142 kcal (2) G-P(sol) polarization free energy of solvation -22.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds