Wall clock time and date at job start Sat Mar 6 2021 23:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42894 * 1 3 3 Si 1.86293 * 109.47340 * 2 1 4 4 C 1.50702 * 109.46871 * 119.99963 * 2 1 3 5 5 C 1.34454 * 126.48074 * 255.02149 * 4 2 1 6 6 N 1.36568 * 109.98222 * 179.97438 * 5 4 2 7 7 C 1.37830 * 109.86374 * 359.97438 * 6 5 4 8 8 C 1.38647 * 133.38324 * 180.02562 * 7 6 5 9 9 C 1.39322 * 119.66804 * 180.02562 * 8 7 6 10 10 C 1.47572 * 119.82927 * 179.97438 * 9 8 7 11 11 O 1.21589 * 120.00415 * 359.97438 * 10 9 8 12 12 N 1.34780 * 119.99761 * 180.02562 * 10 9 8 13 13 C 1.46492 * 120.00132 * 179.97438 * 12 10 9 14 14 H 1.09000 * 109.47152 * 34.99769 * 13 12 10 15 15 C 1.53006 * 109.47363 * 154.99846 * 13 12 10 16 16 C 1.52997 * 109.47127 * 59.99700 * 15 13 12 17 17 C 1.53002 * 109.46817 * 60.00361 * 16 15 13 18 18 H 1.08996 * 109.47407 * 60.00219 * 17 16 15 19 19 O 1.42911 * 109.46810 * 179.97438 * 17 16 15 20 20 C 1.52996 * 109.46972 * 299.99733 * 17 16 15 21 21 C 1.52997 * 109.47131 * 60.00459 * 20 17 16 22 22 C 1.40204 * 120.33334 * 0.25606 * 9 8 7 23 23 C 1.36238 * 120.37745 * 359.46066 * 22 9 8 24 24 C 1.39872 * 119.95913 * 0.55450 * 23 22 9 25 25 H 0.96705 * 114.00002 * 60.00437 * 1 2 3 26 26 H 1.09002 * 109.46912 * 239.99482 * 2 1 3 27 27 H 1.48497 * 109.99910 * 298.67750 * 3 2 1 28 28 H 1.48496 * 110.00364 * 59.99990 * 3 2 1 29 29 H 1.07991 * 125.01082 * 0.02562 * 5 4 2 30 30 H 0.96997 * 125.06765 * 179.97438 * 6 5 4 31 31 H 1.07999 * 120.16371 * 359.97438 * 8 7 6 32 32 H 0.97006 * 119.99905 * 359.97438 * 12 10 9 33 33 H 1.09001 * 109.46801 * 179.97438 * 15 13 12 34 34 H 1.09001 * 109.46998 * 299.99569 * 15 13 12 35 35 H 1.09002 * 109.47153 * 180.02562 * 16 15 13 36 36 H 1.08996 * 109.46952 * 300.00302 * 16 15 13 37 37 H 0.96698 * 113.99178 * 179.97438 * 19 17 16 38 38 H 1.09001 * 109.46993 * 180.02562 * 20 17 16 39 39 H 1.09000 * 109.47380 * 299.99696 * 20 17 16 40 40 H 1.09002 * 109.47153 * 179.97438 * 21 20 17 41 41 H 1.08993 * 109.47194 * 60.00154 * 21 20 17 42 42 H 1.07999 * 119.81002 * 179.72609 * 22 9 8 43 43 H 1.08005 * 120.01743 * 180.28091 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9312 -0.7104 1.2305 5 6 2.4611 -0.1363 2.3247 6 7 2.8025 -1.0947 3.2358 7 6 2.4933 -2.3431 2.7403 8 6 2.6287 -3.6278 3.2437 9 6 2.2111 -4.7155 2.4797 10 6 2.3542 -6.0845 3.0118 11 8 2.8358 -6.2611 4.1141 12 7 1.9518 -7.1391 2.2753 13 6 2.0942 -8.4982 2.8032 14 1 1.9301 -8.4885 3.8808 15 6 1.0644 -9.4141 2.1387 16 6 1.2947 -9.4277 0.6262 17 6 2.7037 -9.9450 0.3296 18 1 2.8098 -10.9562 0.7224 19 8 2.9187 -9.9582 -1.0832 20 6 3.7336 -9.0291 0.9941 21 6 3.5032 -9.0155 2.5066 22 6 1.6612 -4.5162 1.2055 23 6 1.5192 -3.2569 0.7056 24 6 1.9341 -2.1548 1.4604 25 1 -0.3933 0.4417 -0.7651 26 1 1.7922 -0.5139 -0.8900 27 1 1.5880 2.4584 -1.2243 28 1 1.5615 2.4679 1.2084 29 1 2.5960 0.9262 2.4632 30 1 3.2029 -0.9225 4.1023 31 1 3.0566 -3.7847 4.2229 32 1 1.5678 -6.9983 1.3957 33 1 1.1707 -10.4254 2.5312 34 1 0.0605 -9.0456 2.3501 35 1 0.5607 -10.0798 0.1528 36 1 1.1887 -8.4165 0.2335 37 1 3.7939 -10.2754 -1.3448 38 1 4.7374 -9.3974 0.7824 39 1 3.6276 -8.0179 0.6013 40 1 4.2372 -8.3634 2.9800 41 1 3.6093 -10.0267 2.8994 42 1 1.3443 -5.3657 0.6186 43 1 1.0906 -3.1098 -0.2748 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12892148_12335838.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:53:13 Heat of formation + Delta-G solvation = -61.910492 kcal Electronic energy + Delta-G solvation = -26441.932810 eV Core-core repulsion = 22646.495355 eV Total energy + Delta-G solvation = -3795.437455 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.47607 -41.37357 -39.62493 -37.92779 -37.56275 -36.96468 -34.11119 -33.37135 -31.89219 -30.98771 -30.77233 -29.39322 -26.46316 -24.95241 -23.79001 -23.64940 -23.11419 -21.77430 -20.61276 -20.24940 -19.33662 -18.45296 -18.36520 -18.17807 -17.38431 -16.99128 -16.67121 -16.16008 -15.87346 -15.71891 -15.39127 -15.26674 -15.01681 -14.80340 -14.79709 -14.61045 -14.50936 -14.05318 -13.91657 -13.84254 -13.28024 -13.17880 -12.83520 -12.69014 -12.59845 -12.22380 -12.19475 -12.17758 -11.87034 -11.75877 -11.20859 -11.10457 -10.79295 -10.75179 -10.33388 -10.14703 -9.38102 -8.81249 -4.84966 -0.33433 0.35462 1.34640 1.39201 1.65795 1.87781 1.90922 2.01472 2.25539 2.84935 3.24981 3.55095 3.55997 3.67016 3.70762 3.71599 3.82391 4.00090 4.04997 4.05528 4.09488 4.19814 4.28028 4.35039 4.37326 4.43341 4.49084 4.51800 4.57261 4.62135 4.76860 4.86601 4.96560 4.99137 5.03939 5.10556 5.13168 5.20037 5.27065 5.31376 5.39492 5.44551 5.52526 5.59658 5.96226 6.44968 6.50978 6.70278 6.87174 7.13073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.562 6.562 2 C -0.052 4.052 3 Si 0.771 3.229 4 C -0.190 4.190 5 C 0.089 3.911 6 N -0.577 5.577 7 C 0.068 3.932 8 C -0.066 4.066 9 C -0.137 4.137 10 C 0.562 3.438 11 O -0.580 6.580 12 N -0.706 5.706 13 C 0.141 3.859 14 H 0.077 0.923 15 C -0.116 4.116 16 C -0.116 4.116 17 C 0.104 3.896 18 H 0.066 0.934 19 O -0.587 6.587 20 C -0.144 4.144 21 C -0.126 4.126 22 C -0.109 4.109 23 C -0.081 4.081 24 C -0.082 4.082 25 H 0.391 0.609 26 H 0.083 0.917 27 H -0.290 1.290 28 H -0.286 1.286 29 H 0.204 0.796 30 H 0.435 0.565 31 H 0.130 0.870 32 H 0.409 0.591 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.393 0.607 38 H 0.072 0.928 39 H 0.061 0.939 40 H 0.050 0.950 41 H 0.088 0.912 42 H 0.147 0.853 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.129 0.906 -3.356 4.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.372 6.372 2 C -0.160 4.160 3 Si 0.674 3.326 4 C -0.197 4.197 5 C -0.040 4.040 6 N -0.180 5.180 7 C -0.039 4.039 8 C -0.087 4.087 9 C -0.141 4.141 10 C 0.351 3.649 11 O -0.461 6.461 12 N -0.359 5.359 13 C 0.037 3.963 14 H 0.096 0.904 15 C -0.154 4.154 16 C -0.153 4.153 17 C 0.046 3.954 18 H 0.084 0.916 19 O -0.395 6.395 20 C -0.182 4.182 21 C -0.164 4.164 22 C -0.129 4.129 23 C -0.100 4.100 24 C -0.087 4.087 25 H 0.241 0.759 26 H 0.101 0.899 27 H -0.217 1.217 28 H -0.212 1.212 29 H 0.221 0.779 30 H 0.275 0.725 31 H 0.148 0.852 32 H 0.248 0.752 33 H 0.115 0.885 34 H 0.102 0.898 35 H 0.095 0.905 36 H 0.085 0.915 37 H 0.242 0.758 38 H 0.091 0.909 39 H 0.079 0.921 40 H 0.069 0.931 41 H 0.107 0.893 42 H 0.165 0.835 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 1.797 1.521 -1.912 3.033 hybrid contribution -0.498 -0.156 -0.293 0.598 sum 1.299 1.364 -2.204 2.900 Atomic orbital electron populations 1.86593 1.19248 1.80630 1.50702 1.24337 0.83337 1.11418 0.96934 0.94194 0.90005 0.71279 0.77080 1.19807 1.10653 0.91047 0.98186 1.22204 0.98257 0.95456 0.88126 1.41759 1.54304 1.03273 1.18658 1.18130 1.03863 0.86820 0.95076 1.20123 0.99858 0.88649 1.00098 1.19499 1.06053 0.91966 0.96589 1.18338 0.77017 0.85344 0.84197 1.90754 1.46587 1.86818 1.21983 1.45969 1.63185 1.05622 1.21078 1.21064 0.95710 0.80670 0.98880 0.90438 1.21772 0.98788 1.00630 0.94232 1.21502 0.95757 1.02190 0.95882 1.21859 0.94922 0.98102 0.80529 0.91643 1.86476 1.40371 1.89740 1.22924 1.22179 0.99843 1.00900 0.95308 1.21834 0.96297 1.02174 0.96113 1.20863 0.99852 0.97981 0.94156 1.20388 0.98861 0.90488 1.00220 1.19553 1.01056 0.94080 0.93993 0.75931 0.89885 1.21716 1.21247 0.77922 0.72484 0.85197 0.75171 0.88500 0.89776 0.90475 0.91509 0.75764 0.90937 0.92070 0.93137 0.89324 0.83526 0.84107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.52 12.86 -148.98 -1.92 -3.44 16 2 C -0.05 0.03 3.05 71.24 0.22 0.25 16 3 Si 0.77 -3.11 30.79 68.60 2.11 -1.00 16 4 C -0.19 -0.51 5.61 -18.64 -0.10 -0.61 16 5 C 0.09 -0.11 10.43 83.09 0.87 0.76 16 6 N -0.58 0.27 6.07 -187.71 -1.14 -0.86 16 7 C 0.07 0.36 7.26 38.96 0.28 0.64 16 8 C -0.07 -0.47 9.61 22.63 0.22 -0.25 16 9 C -0.14 -0.89 5.87 -20.08 -0.12 -1.00 16 10 C 0.56 4.61 7.72 86.71 0.67 5.28 16 11 O -0.58 -9.00 15.97 -4.00 -0.06 -9.07 16 12 N -0.71 -1.22 4.18 -445.66 -1.86 -3.08 16 13 C 0.14 0.07 2.78 44.99 0.13 0.19 16 14 H 0.08 0.32 7.58 -2.39 -0.02 0.31 16 15 C -0.12 0.49 5.61 30.60 0.17 0.66 16 16 C -0.12 0.36 5.40 30.59 0.17 0.52 16 17 C 0.10 -0.25 3.47 30.59 0.11 -0.14 16 18 H 0.07 -0.26 8.14 -2.39 -0.02 -0.28 16 19 O -0.59 -0.02 13.32 -148.98 -1.98 -2.00 16 20 C -0.14 0.24 5.39 30.59 0.16 0.40 16 21 C -0.13 -0.02 5.60 30.59 0.17 0.15 16 22 C -0.11 -0.27 9.46 22.28 0.21 -0.06 16 23 C -0.08 -0.30 10.03 22.20 0.22 -0.08 16 24 C -0.08 -0.47 6.35 -20.14 -0.13 -0.60 16 25 H 0.39 -2.10 8.74 -74.05 -0.65 -2.75 16 26 H 0.08 -0.27 7.96 -2.39 -0.02 -0.29 16 27 H -0.29 -0.27 7.11 99.48 0.71 0.44 16 28 H -0.29 -0.31 7.04 99.48 0.70 0.40 16 29 H 0.20 -1.55 6.30 -2.92 -0.02 -1.57 16 30 H 0.43 -2.77 8.96 -92.71 -0.83 -3.60 16 31 H 0.13 0.95 7.62 -2.91 -0.02 0.92 16 32 H 0.41 -0.95 4.86 -92.70 -0.45 -1.40 16 33 H 0.10 -0.61 8.14 -2.39 -0.02 -0.63 16 34 H 0.08 -0.40 8.14 -2.39 -0.02 -0.42 16 35 H 0.08 -0.21 8.14 -2.39 -0.02 -0.23 16 36 H 0.07 -0.20 6.50 -2.39 -0.02 -0.22 16 37 H 0.39 -2.75 9.08 -74.06 -0.67 -3.42 16 38 H 0.07 -0.20 8.14 -2.39 -0.02 -0.22 16 39 H 0.06 0.04 7.60 -2.39 -0.02 0.02 16 40 H 0.05 0.26 8.14 -2.39 -0.02 0.24 16 41 H 0.09 -0.23 8.14 -2.39 -0.02 -0.25 16 42 H 0.15 -0.49 6.36 -2.91 -0.02 -0.51 16 43 H 0.14 0.05 8.06 -2.91 -0.02 0.03 16 Total: 0.00 -23.67 347.60 -3.09 -26.77 By element: Atomic # 1 Polarization: -11.94 SS G_CDS: -1.48 Total: -13.42 kcal Atomic # 6 Polarization: 2.87 SS G_CDS: 3.24 Total: 6.11 kcal Atomic # 7 Polarization: -0.95 SS G_CDS: -3.00 Total: -3.95 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: -3.96 Total: -14.51 kcal Atomic # 14 Polarization: -3.11 SS G_CDS: 2.11 Total: -1.00 kcal Total: -23.67 -3.09 -26.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12892148_12335838.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.143 kcal (2) G-P(sol) polarization free energy of solvation -23.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds