Wall clock time and date at job start Sat Mar 6 2021 23:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86293 * 109.47324 * 2 1 4 4 C 1.50702 * 109.47131 * 239.99761 * 2 1 3 5 5 C 1.38321 * 119.91942 * 119.98330 * 4 2 1 6 6 C 1.38472 * 120.28268 * 180.02562 * 5 4 2 7 7 Br 1.89097 * 119.93874 * 180.02562 * 6 5 4 8 8 C 1.38029 * 120.12116 * 359.71519 * 6 5 4 9 9 C 1.39587 * 119.84548 * 0.55765 * 8 6 5 10 10 C 1.47845 * 120.14387 * 179.71637 * 9 8 6 11 11 O 1.21549 * 120.00139 * 179.72731 * 10 9 8 12 12 N 1.34779 * 119.99652 * 359.72893 * 10 9 8 13 13 C 1.46500 * 119.99793 * 179.97438 * 12 10 9 14 14 H 1.09002 * 109.47092 * 34.99824 * 13 12 10 15 15 C 1.52997 * 109.47007 * 154.99772 * 13 12 10 16 16 C 1.53006 * 109.47127 * 60.00219 * 15 13 12 17 17 C 1.52997 * 109.47164 * 59.99836 * 16 15 13 18 18 H 1.09001 * 109.47375 * 59.99966 * 17 16 15 19 19 O 1.42905 * 109.46921 * 179.97438 * 17 16 15 20 20 C 1.53002 * 109.46978 * 299.99874 * 17 16 15 21 21 C 1.52996 * 109.46891 * 60.00410 * 20 17 16 22 22 C 1.37982 * 119.92188 * 300.00103 * 4 2 1 23 23 H 0.96707 * 113.99401 * 60.00133 * 1 2 3 24 24 H 1.08998 * 109.46690 * 119.99957 * 2 1 3 25 25 H 1.48502 * 110.00079 * 59.99565 * 3 2 1 26 26 H 1.48498 * 110.00126 * 181.31469 * 3 2 1 27 27 H 1.07996 * 119.86174 * 359.97438 * 5 4 2 28 28 H 1.08004 * 120.07974 * 180.29669 * 8 6 5 29 29 H 0.97004 * 119.99983 * 359.97438 * 12 10 9 30 30 H 1.08998 * 109.47533 * 179.97438 * 15 13 12 31 31 H 1.08996 * 109.47853 * 300.00060 * 15 13 12 32 32 H 1.09000 * 109.47050 * 179.97438 * 16 15 13 33 33 H 1.09001 * 109.47002 * 299.99574 * 16 15 13 34 34 H 0.96697 * 113.99519 * 179.97438 * 19 17 16 35 35 H 1.09004 * 109.47006 * 180.02562 * 20 17 16 36 36 H 1.08992 * 109.47056 * 300.00064 * 20 17 16 37 37 H 1.09004 * 109.47368 * 179.97438 * 21 20 17 38 38 H 1.09001 * 109.47372 * 59.99964 * 21 20 17 39 39 H 1.08003 * 120.06818 * 359.95395 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2304 5 6 2.7262 -0.0366 -2.1400 6 6 3.1914 -0.6819 -3.2734 7 35 4.2780 0.2485 -4.5101 8 6 2.8688 -2.0049 -3.4989 9 6 2.0623 -2.6883 -2.5873 10 6 1.7075 -4.1037 -2.8254 11 8 1.0092 -4.6977 -2.0274 12 7 2.1585 -4.7352 -3.9274 13 6 1.8074 -6.1378 -4.1631 14 1 0.7971 -6.3255 -3.7995 15 6 1.8732 -6.4349 -5.6625 16 6 3.2913 -6.1715 -6.1730 17 6 4.2769 -7.0757 -5.4301 18 1 4.0157 -8.1193 -5.6055 19 8 5.6013 -6.8300 -5.9073 20 6 4.2111 -6.7785 -3.9307 21 6 2.7931 -7.0420 -3.4203 22 6 1.5970 -2.0315 -1.4472 23 1 -0.3932 0.4417 -0.7651 24 1 1.7922 -0.5138 0.8900 25 1 1.5615 2.4679 1.2085 26 1 3.5346 1.7702 -0.0320 27 1 2.9843 0.9975 -1.9660 28 1 3.2360 -2.5089 -4.3806 29 1 2.7156 -4.2609 -4.5644 30 1 1.6124 -7.4786 -5.8380 31 1 1.1710 -5.7908 -6.1918 32 1 3.3383 -6.3836 -7.2411 33 1 3.5525 -5.1278 -5.9976 34 1 6.2800 -7.3696 -5.4792 35 1 4.9137 -7.4224 -3.4015 36 1 4.4724 -5.7350 -3.7554 37 1 2.7463 -6.8307 -2.3520 38 1 2.5319 -8.0856 -3.5957 39 1 0.9767 -2.5564 -0.7357 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12892148_12335870.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:53:33 Heat of formation + Delta-G solvation = -90.769094 kcal Electronic energy + Delta-G solvation = -23882.490402 eV Core-core repulsion = 20223.399352 eV Total energy + Delta-G solvation = -3659.091050 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 356.046 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.82741 -40.58746 -39.36481 -37.69914 -37.02750 -34.43498 -33.63041 -32.85923 -31.91706 -30.47899 -29.78822 -27.03899 -25.51927 -23.80498 -23.19353 -22.81440 -21.84856 -20.29676 -19.30492 -18.24226 -17.95084 -17.67560 -17.24427 -16.75140 -16.48150 -16.28708 -16.03568 -15.68634 -15.39221 -15.01073 -14.94062 -14.76216 -14.36280 -14.15035 -14.05788 -13.94144 -13.31351 -13.29130 -13.04830 -12.84647 -12.26559 -12.21616 -12.21125 -11.97959 -11.97390 -11.78804 -11.48425 -11.24325 -11.19914 -10.78879 -10.61252 -10.34894 -10.11541 -9.93356 -5.06150 -0.54187 -0.19086 0.40874 1.20252 1.49974 1.58635 1.89832 1.97991 2.44546 3.22226 3.24949 3.32524 3.51837 3.62932 3.67870 3.78173 3.84607 3.93398 3.99985 4.02716 4.16273 4.19715 4.26487 4.34075 4.40714 4.46039 4.47358 4.57745 4.73546 4.84351 4.89583 4.93989 5.01493 5.06312 5.07470 5.11586 5.23915 5.27969 5.33958 5.42597 6.32641 6.70215 6.84438 7.00779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.552 6.552 2 C -0.075 4.075 3 Si 0.772 3.228 4 C -0.115 4.115 5 C -0.061 4.061 6 C -0.098 4.098 7 Br -0.028 7.028 8 C -0.047 4.047 9 C -0.136 4.136 10 C 0.560 3.440 11 O -0.570 6.570 12 N -0.705 5.705 13 C 0.142 3.858 14 H 0.081 0.919 15 C -0.117 4.117 16 C -0.116 4.116 17 C 0.103 3.897 18 H 0.065 0.935 19 O -0.587 6.587 20 C -0.145 4.145 21 C -0.126 4.126 22 C -0.029 4.029 23 H 0.397 0.603 24 H 0.113 0.887 25 H -0.293 1.293 26 H -0.277 1.277 27 H 0.157 0.843 28 H 0.156 0.844 29 H 0.409 0.591 30 H 0.097 0.903 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.066 0.934 34 H 0.392 0.608 35 H 0.071 0.929 36 H 0.060 0.940 37 H 0.050 0.950 38 H 0.089 0.911 39 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.184 0.730 -4.692 4.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.360 6.360 2 C -0.184 4.184 3 Si 0.676 3.324 4 C -0.116 4.116 5 C -0.081 4.081 6 C -0.178 4.178 7 Br 0.058 6.942 8 C -0.067 4.067 9 C -0.140 4.140 10 C 0.347 3.653 11 O -0.450 6.450 12 N -0.358 5.358 13 C 0.038 3.962 14 H 0.099 0.901 15 C -0.154 4.154 16 C -0.153 4.153 17 C 0.045 3.955 18 H 0.083 0.917 19 O -0.395 6.395 20 C -0.183 4.183 21 C -0.165 4.165 22 C -0.048 4.048 23 H 0.247 0.753 24 H 0.131 0.869 25 H -0.220 1.220 26 H -0.203 1.203 27 H 0.174 0.826 28 H 0.173 0.827 29 H 0.248 0.752 30 H 0.115 0.885 31 H 0.105 0.895 32 H 0.096 0.904 33 H 0.085 0.915 34 H 0.242 0.758 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.069 0.931 38 H 0.107 0.893 39 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 1.353 1.329 -4.049 4.471 hybrid contribution 0.405 -1.132 0.902 1.503 sum 1.758 0.198 -3.147 3.610 Atomic orbital electron populations 1.86512 1.16825 1.82150 1.50539 1.25251 0.85628 1.11047 0.96489 0.93822 0.78313 0.74758 0.85488 1.20353 0.99221 0.94328 0.97736 1.21384 0.94632 1.00478 0.91567 1.21736 1.02934 0.95737 0.97346 1.96862 1.65614 1.75245 1.56519 1.21415 0.94274 0.92514 0.98499 1.19912 1.02582 0.93893 0.97640 1.18326 0.79204 0.86239 0.81488 1.90794 1.39486 1.68177 1.46579 1.46005 1.52818 1.13235 1.23715 1.21088 0.98998 0.79570 0.96581 0.90128 1.21780 0.96648 1.04504 0.92500 1.21509 0.93306 0.99801 1.00715 1.21874 0.82808 0.98930 0.91900 0.91663 1.86476 1.17609 1.68320 1.67098 1.22183 0.97114 1.02358 0.96606 1.21843 0.94619 1.00603 0.99432 1.21250 0.94877 0.93564 0.95145 0.75271 0.86942 1.22008 1.20299 0.82560 0.82675 0.75220 0.88476 0.89479 0.90412 0.91490 0.75798 0.91063 0.92118 0.93149 0.89279 0.85052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.06 12.76 -148.98 -1.90 -1.84 16 2 C -0.07 0.10 2.82 71.24 0.20 0.30 16 3 Si 0.77 -2.69 29.78 68.60 2.04 -0.65 16 4 C -0.12 0.07 5.38 -19.90 -0.11 -0.03 16 5 C -0.06 0.15 8.41 22.35 0.19 0.34 16 6 C -0.10 0.18 6.22 22.28 0.14 0.31 16 7 Br -0.03 0.06 33.69 -20.37 -0.69 -0.63 16 8 C -0.05 0.09 9.28 22.55 0.21 0.30 16 9 C -0.14 -0.28 5.87 -20.09 -0.12 -0.40 16 10 C 0.56 2.79 7.74 86.79 0.67 3.46 16 11 O -0.57 -7.44 16.01 -3.87 -0.06 -7.50 16 12 N -0.70 0.74 4.18 -445.41 -1.86 -1.13 16 13 C 0.14 -0.23 2.78 44.99 0.13 -0.11 16 14 H 0.08 0.15 7.58 -2.39 -0.02 0.14 16 15 C -0.12 0.71 5.61 30.60 0.17 0.89 16 16 C -0.12 0.55 5.40 30.60 0.17 0.71 16 17 C 0.10 -0.36 3.47 30.59 0.11 -0.26 16 18 H 0.07 -0.32 8.14 -2.39 -0.02 -0.34 16 19 O -0.59 0.49 13.32 -148.98 -1.98 -1.50 16 20 C -0.14 0.41 5.39 30.59 0.16 0.58 16 21 C -0.13 0.17 5.60 30.59 0.17 0.34 16 22 C -0.03 -0.09 9.15 22.53 0.21 0.12 16 23 H 0.40 -3.37 8.70 -74.05 -0.64 -4.01 16 24 H 0.11 0.00 7.96 -2.39 -0.02 -0.02 16 25 H -0.29 -1.17 7.11 99.48 0.71 -0.47 16 26 H -0.28 -0.13 7.11 99.48 0.71 0.58 16 27 H 0.16 -0.93 4.86 -2.91 -0.01 -0.95 16 28 H 0.16 -0.99 6.41 -2.91 -0.02 -1.01 16 29 H 0.41 -2.12 4.90 -92.71 -0.45 -2.58 16 30 H 0.10 -0.77 8.14 -2.39 -0.02 -0.79 16 31 H 0.09 -0.61 8.14 -2.39 -0.02 -0.63 16 32 H 0.08 -0.32 8.14 -2.39 -0.02 -0.34 16 33 H 0.07 -0.33 6.51 -2.39 -0.02 -0.34 16 34 H 0.39 -2.98 9.08 -74.06 -0.67 -3.66 16 35 H 0.07 -0.26 8.14 -2.38 -0.02 -0.28 16 36 H 0.06 -0.05 7.60 -2.39 -0.02 -0.07 16 37 H 0.05 0.19 8.14 -2.39 -0.02 0.17 16 38 H 0.09 -0.34 8.14 -2.39 -0.02 -0.36 16 39 H 0.13 0.83 7.65 -2.91 -0.02 0.81 16 Total: 0.00 -18.07 335.32 -2.78 -20.85 By element: Atomic # 1 Polarization: -13.53 SS G_CDS: -0.62 Total: -14.15 kcal Atomic # 6 Polarization: 4.26 SS G_CDS: 2.29 Total: 6.55 kcal Atomic # 7 Polarization: 0.74 SS G_CDS: -1.86 Total: -1.13 kcal Atomic # 8 Polarization: -6.89 SS G_CDS: -3.95 Total: -10.84 kcal Atomic # 14 Polarization: -2.69 SS G_CDS: 2.04 Total: -0.65 kcal Atomic # 35 Polarization: 0.06 SS G_CDS: -0.69 Total: -0.63 kcal Total: -18.07 -2.78 -20.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12892148_12335870.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.920 kcal (2) G-P(sol) polarization free energy of solvation -18.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds