Wall clock time and date at job start Sat Mar 6 2021 23:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86299 * 109.47028 * 2 1 4 4 C 1.50696 * 109.47144 * 239.99437 * 2 1 3 5 5 C 1.38399 * 119.83152 * 300.00168 * 4 2 1 6 6 C 1.37889 * 120.17412 * 179.97438 * 5 4 2 7 7 C 1.39839 * 119.82189 * 0.02562 * 6 5 4 8 8 C 1.47216 * 120.16549 * 179.97438 * 7 6 5 9 9 C 1.34807 * 119.99573 * 180.02562 * 8 7 6 10 10 C 1.46436 * 119.99548 * 180.02562 * 9 8 7 11 11 O 1.21686 * 119.99912 * 359.71674 * 10 9 8 12 12 N 1.34777 * 119.99835 * 180.02562 * 10 9 8 13 13 C 1.46496 * 120.00258 * 179.97438 * 12 10 9 14 14 H 1.09007 * 109.46674 * 324.99519 * 13 12 10 15 15 C 1.52998 * 109.47229 * 84.99168 * 13 12 10 16 16 C 1.52996 * 109.47014 * 180.02562 * 15 13 12 17 17 C 1.53001 * 109.47621 * 300.00631 * 16 15 13 18 18 H 1.08992 * 109.47805 * 180.02562 * 17 16 15 19 19 O 1.42902 * 109.46691 * 299.99812 * 17 16 15 20 20 C 1.53001 * 109.46935 * 59.99502 * 17 16 15 21 21 C 1.52996 * 109.47401 * 300.00254 * 20 17 16 22 22 C 1.39828 * 119.66576 * 0.27038 * 7 6 5 23 23 C 1.37894 * 119.82196 * 359.42770 * 22 7 6 24 24 H 0.96692 * 113.99995 * 59.99989 * 1 2 3 25 25 H 1.09005 * 109.47091 * 119.99438 * 2 1 3 26 26 H 1.48491 * 110.00105 * 59.99693 * 3 2 1 27 27 H 1.48497 * 109.99878 * 181.31975 * 3 2 1 28 28 H 1.08006 * 119.91143 * 359.97438 * 5 4 2 29 29 H 1.07996 * 120.09053 * 179.97438 * 6 5 4 30 30 H 1.07999 * 120.00098 * 359.97438 * 8 7 6 31 31 H 1.07999 * 120.00329 * 359.97438 * 9 8 7 32 32 H 0.97004 * 119.99532 * 359.97438 * 12 10 9 33 33 H 1.08993 * 109.47532 * 300.00643 * 15 13 12 34 34 H 1.09002 * 109.46580 * 60.00690 * 15 13 12 35 35 H 1.08997 * 109.47231 * 180.02562 * 16 15 13 36 36 H 1.08994 * 109.47105 * 60.00509 * 16 15 13 37 37 H 0.96700 * 114.00330 * 300.00114 * 19 17 16 38 38 H 1.09001 * 109.46912 * 180.02562 * 20 17 16 39 39 H 1.08994 * 109.46917 * 60.00657 * 20 17 16 40 40 H 1.08994 * 109.47414 * 300.00099 * 21 20 17 41 41 H 1.08997 * 109.47261 * 179.97438 * 21 20 17 42 42 H 1.08001 * 120.09236 * 179.72922 * 22 7 6 43 43 H 1.08001 * 119.91725 * 180.27445 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 1.5949 -2.0356 -1.4458 6 6 2.0502 -2.6924 -2.5695 7 6 2.8544 -2.0162 -3.4922 8 6 3.3451 -2.7103 -4.6942 9 6 4.1206 -2.0553 -5.5813 10 6 4.6083 -2.7455 -6.7771 11 8 4.3178 -3.9118 -6.9675 12 7 5.3840 -2.0909 -7.6638 13 6 5.8724 -2.7815 -8.8599 14 1 6.0771 -3.8247 -8.6189 15 6 4.8103 -2.7110 -9.9589 16 6 5.3201 -3.4328 -11.2079 17 6 6.6051 -2.7611 -11.6964 18 1 6.9681 -3.2750 -12.5864 19 8 6.3371 -1.3936 -12.0127 20 6 7.6671 -2.8317 -10.5973 21 6 7.1573 -2.1098 -9.3484 22 6 3.1951 -0.6794 -3.2644 23 6 2.7268 -0.0345 -2.1391 24 1 -0.3933 0.4417 -0.7650 25 1 1.7924 -0.5138 0.8901 26 1 1.5615 2.4679 1.2084 27 1 3.5346 1.7703 -0.0321 28 1 0.9740 -2.5565 -0.7319 29 1 1.7871 -3.7265 -2.7360 30 1 3.0845 -3.7444 -4.8648 31 1 4.3815 -1.0213 -5.4104 32 1 5.6189 -1.1624 -7.5099 33 1 3.8951 -3.1899 -9.6111 34 1 4.6056 -1.6678 -10.1999 35 1 4.5637 -3.3822 -11.9910 36 1 5.5246 -4.4759 -10.9666 37 1 5.6714 -1.2728 -12.7037 38 1 8.5824 -2.3527 -10.9451 39 1 7.8715 -3.8747 -10.3560 40 1 6.9529 -1.0667 -9.5896 41 1 7.9137 -2.1604 -8.5652 42 1 3.8194 -0.1518 -3.9704 43 1 2.9854 0.9994 -1.9639 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12892148_12360594.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:53:39 Heat of formation + Delta-G solvation = -84.565095 kcal Electronic energy + Delta-G solvation = -23774.788437 eV Core-core repulsion = 20172.020656 eV Total energy + Delta-G solvation = -3602.767781 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 304.151 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.22056 -40.58787 -39.65823 -37.78606 -36.69079 -35.06696 -34.25963 -32.22915 -31.83700 -31.36384 -29.70719 -27.08005 -24.51915 -23.96817 -23.79538 -22.85876 -21.80231 -21.11424 -20.25408 -18.83074 -18.12459 -17.73449 -17.55678 -16.87625 -16.64758 -16.41358 -16.14963 -16.00582 -15.67848 -15.46398 -15.11692 -14.93255 -14.56277 -14.40916 -14.20409 -14.01738 -13.81762 -13.53311 -13.29247 -13.21864 -13.05512 -13.00136 -12.44644 -12.26885 -12.04664 -12.03741 -11.71378 -11.61309 -11.36459 -11.26493 -11.10430 -10.67723 -10.44095 -10.10449 -9.99515 -9.24849 -5.00161 -0.56092 0.38474 0.87915 1.30880 1.63195 1.96794 2.16287 2.23032 2.80956 3.39427 3.47028 3.56020 3.65474 3.71692 3.73864 3.82298 3.93979 3.99651 4.07000 4.17209 4.20079 4.22740 4.35109 4.39193 4.43429 4.45873 4.50529 4.51597 4.65621 4.83067 4.88957 4.96120 4.97953 5.04256 5.08387 5.12566 5.14679 5.17106 5.26459 5.35778 5.37616 5.46847 5.53421 5.59097 5.89165 6.54415 6.75310 6.90902 7.21017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.556 6.556 2 C -0.079 4.079 3 Si 0.781 3.219 4 C -0.112 4.112 5 C -0.108 4.108 6 C -0.103 4.103 7 C -0.081 4.081 8 C -0.021 4.021 9 C -0.208 4.208 10 C 0.541 3.459 11 O -0.592 6.592 12 N -0.709 5.709 13 C 0.146 3.854 14 H 0.065 0.935 15 C -0.119 4.119 16 C -0.148 4.148 17 C 0.105 3.895 18 H 0.066 0.934 19 O -0.578 6.578 20 C -0.114 4.114 21 C -0.114 4.114 22 C -0.095 4.095 23 C -0.122 4.122 24 H 0.396 0.604 25 H 0.106 0.894 26 H -0.303 1.303 27 H -0.282 1.282 28 H 0.129 0.871 29 H 0.136 0.864 30 H 0.121 0.879 31 H 0.164 0.836 32 H 0.416 0.584 33 H 0.043 0.957 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.391 0.609 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.078 0.922 41 H 0.073 0.927 42 H 0.157 0.843 43 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.027 4.816 -3.530 6.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.364 6.364 2 C -0.189 4.189 3 Si 0.687 3.313 4 C -0.112 4.112 5 C -0.126 4.126 6 C -0.121 4.121 7 C -0.081 4.081 8 C -0.041 4.041 9 C -0.229 4.229 10 C 0.331 3.669 11 O -0.475 6.475 12 N -0.359 5.359 13 C 0.041 3.959 14 H 0.083 0.917 15 C -0.157 4.157 16 C -0.186 4.186 17 C 0.046 3.954 18 H 0.084 0.916 19 O -0.386 6.386 20 C -0.152 4.152 21 C -0.152 4.152 22 C -0.112 4.112 23 C -0.139 4.139 24 H 0.246 0.754 25 H 0.123 0.877 26 H -0.231 1.231 27 H -0.209 1.209 28 H 0.147 0.853 29 H 0.153 0.847 30 H 0.139 0.861 31 H 0.181 0.819 32 H 0.253 0.747 33 H 0.061 0.939 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.089 0.911 37 H 0.240 0.760 38 H 0.096 0.904 39 H 0.101 0.899 40 H 0.097 0.903 41 H 0.092 0.908 42 H 0.175 0.825 43 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 1.859 4.385 -2.266 5.275 hybrid contribution -0.433 -0.799 0.001 0.908 sum 1.427 3.587 -2.266 4.476 Atomic orbital electron populations 1.86473 1.17216 1.82200 1.50532 1.25268 0.85350 1.11129 0.97135 0.93673 0.77845 0.74978 0.84788 1.20618 0.98484 0.95106 0.97010 1.21065 0.99545 0.94322 0.97625 1.21608 0.96345 1.00549 0.93595 1.19110 0.99534 0.94652 0.94806 1.22360 0.91728 0.99149 0.90870 1.23025 1.02922 1.02327 0.94588 1.18778 0.78090 0.86013 0.83971 1.90802 1.59691 1.18745 1.78274 1.45887 1.51161 1.16376 1.22524 1.20969 0.94114 0.96736 0.84050 0.91679 1.21732 0.97568 1.01539 0.94890 1.22206 0.98488 1.00162 0.97748 1.21794 0.94027 0.82445 0.97148 0.91581 1.86465 1.64536 1.25642 1.61956 1.21557 0.98087 1.01646 0.93887 1.21632 0.95205 1.00661 0.97670 1.21659 0.98702 0.93284 0.97587 1.21186 0.98015 1.00453 0.94269 0.75436 0.87684 1.23128 1.20873 0.85347 0.84653 0.86075 0.81885 0.74681 0.93861 0.90767 0.90400 0.91124 0.76012 0.90431 0.89886 0.90340 0.90794 0.82525 0.83283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.11 12.76 -148.98 -1.90 -1.79 16 2 C -0.08 0.10 2.82 71.23 0.20 0.30 16 3 Si 0.78 -2.70 29.77 68.60 2.04 -0.66 16 4 C -0.11 0.10 5.40 -19.79 -0.11 -0.01 16 5 C -0.11 -0.10 9.59 22.23 0.21 0.12 16 6 C -0.10 -0.09 9.80 22.57 0.22 0.13 16 7 C -0.08 -0.01 5.87 -20.15 -0.12 -0.13 16 8 C -0.02 -0.03 9.46 23.84 0.23 0.19 16 9 C -0.21 0.10 9.41 23.62 0.22 0.32 16 10 C 0.54 2.84 7.71 86.38 0.67 3.51 16 11 O -0.59 -8.58 15.89 -4.30 -0.07 -8.65 16 12 N -0.71 0.08 5.07 -446.77 -2.27 -2.18 16 13 C 0.15 0.20 2.45 44.99 0.11 0.31 16 14 H 0.06 0.40 7.57 -2.38 -0.02 0.38 16 15 C -0.12 -0.17 5.35 30.59 0.16 -0.01 16 16 C -0.15 0.23 5.64 30.59 0.17 0.40 16 17 C 0.10 -0.27 3.77 30.60 0.12 -0.15 16 18 H 0.07 -0.28 8.14 -2.39 -0.02 -0.30 16 19 O -0.58 0.94 11.97 -148.98 -1.78 -0.84 16 20 C -0.11 0.26 5.66 30.59 0.17 0.44 16 21 C -0.11 0.23 5.25 30.59 0.16 0.39 16 22 C -0.09 0.32 9.41 22.57 0.21 0.53 16 23 C -0.12 0.42 8.65 22.23 0.19 0.61 16 24 H 0.40 -3.29 8.70 -74.06 -0.64 -3.94 16 25 H 0.11 0.03 7.96 -2.38 -0.02 0.02 16 26 H -0.30 -1.42 7.11 99.48 0.71 -0.71 16 27 H -0.28 -0.17 7.11 99.48 0.71 0.54 16 28 H 0.13 0.07 8.06 -2.91 -0.02 0.04 16 29 H 0.14 -0.15 8.06 -2.91 -0.02 -0.17 16 30 H 0.12 0.55 7.52 -2.91 -0.02 0.53 16 31 H 0.16 -1.30 6.07 -2.91 -0.02 -1.32 16 32 H 0.42 -2.64 8.58 -92.71 -0.80 -3.44 16 33 H 0.04 0.27 8.14 -2.39 -0.02 0.25 16 34 H 0.07 0.06 7.68 -2.39 -0.02 0.04 16 35 H 0.08 -0.26 8.14 -2.39 -0.02 -0.28 16 36 H 0.07 -0.04 8.14 -2.39 -0.02 -0.06 16 37 H 0.39 -3.20 9.08 -74.06 -0.67 -3.87 16 38 H 0.08 -0.18 8.14 -2.39 -0.02 -0.20 16 39 H 0.08 -0.27 8.14 -2.39 -0.02 -0.29 16 40 H 0.08 -0.13 7.68 -2.39 -0.02 -0.15 16 41 H 0.07 -0.22 8.14 -2.39 -0.02 -0.24 16 42 H 0.16 -1.42 6.17 -2.91 -0.02 -1.44 16 43 H 0.15 -1.18 4.85 -2.91 -0.01 -1.20 16 Total: 0.00 -20.80 350.90 -2.18 -22.98 By element: Atomic # 1 Polarization: -14.78 SS G_CDS: -1.03 Total: -15.81 kcal Atomic # 6 Polarization: 4.14 SS G_CDS: 2.82 Total: 6.96 kcal Atomic # 7 Polarization: 0.08 SS G_CDS: -2.27 Total: -2.18 kcal Atomic # 8 Polarization: -7.53 SS G_CDS: -3.75 Total: -11.28 kcal Atomic # 14 Polarization: -2.70 SS G_CDS: 2.04 Total: -0.66 kcal Total: -20.80 -2.18 -22.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12892148_12360594.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.585 kcal (2) G-P(sol) polarization free energy of solvation -20.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds