Wall clock time and date at job start Sat Mar 6 2021 23:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86290 * 109.47347 * 2 1 4 4 C 1.50706 * 109.47196 * 239.99552 * 2 1 3 5 5 C 1.37814 * 119.94057 * 255.00245 * 4 2 1 6 6 C 1.39670 * 119.87657 * 179.97438 * 5 4 2 7 7 C 1.47726 * 120.11878 * 179.97438 * 6 5 4 8 8 O 1.21569 * 119.99792 * 0.03246 * 7 6 5 9 9 N 1.34777 * 119.99880 * 180.02562 * 7 6 5 10 10 C 1.46507 * 119.99548 * 180.02562 * 9 7 6 11 11 H 1.09001 * 109.47027 * 35.00746 * 10 9 7 12 12 C 1.53001 * 109.46782 * 155.00261 * 10 9 7 13 13 C 1.53003 * 109.47141 * 60.00170 * 12 10 9 14 14 C 1.52999 * 109.46998 * 59.99553 * 13 12 10 15 15 H 1.09000 * 109.46977 * 60.00320 * 14 13 12 16 16 O 1.42900 * 109.47311 * 179.97438 * 14 13 12 17 17 C 1.53001 * 109.47539 * 300.00203 * 14 13 12 18 18 C 1.52990 * 109.47251 * 275.00606 * 10 9 7 19 19 C 1.39637 * 119.76357 * 0.02562 * 6 5 4 20 20 C 1.37856 * 119.87932 * 359.97438 * 19 6 5 21 21 C 1.38634 * 120.12096 * 0.26107 * 20 19 6 22 22 F 1.35093 * 119.88243 * 179.73969 * 21 20 19 23 23 H 0.96693 * 113.99785 * 60.00354 * 1 2 3 24 24 H 1.09006 * 109.47152 * 120.00295 * 2 1 3 25 25 H 1.48504 * 110.00000 * 298.68060 * 3 2 1 26 26 H 1.48502 * 110.00120 * 59.99599 * 3 2 1 27 27 H 1.07993 * 120.06133 * 0.02562 * 5 4 2 28 28 H 0.96995 * 120.00348 * 0.02562 * 9 7 6 29 29 H 1.09000 * 109.47082 * 180.02562 * 12 10 9 30 30 H 1.09007 * 109.47076 * 300.00453 * 12 10 9 31 31 H 1.08998 * 109.47434 * 180.02562 * 13 12 10 32 32 H 1.09000 * 109.46995 * 299.99885 * 13 12 10 33 33 H 0.96693 * 114.00233 * 180.02562 * 16 14 13 34 34 H 1.08998 * 109.47034 * 179.97438 * 17 14 13 35 35 H 1.09000 * 109.47082 * 300.00054 * 17 14 13 36 36 H 1.08992 * 109.47461 * 59.99991 * 18 10 9 37 37 H 1.09000 * 109.47099 * 180.02562 * 18 10 9 38 38 H 1.07999 * 120.05950 * 180.02562 * 19 6 5 39 39 H 1.08002 * 119.93635 * 179.97438 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7563 0.0000 4 6 1.9314 -0.7105 -1.2305 5 6 2.4520 -1.9823 -1.1260 6 6 2.9167 -2.6397 -2.2673 7 6 3.4764 -4.0028 -2.1614 8 8 3.5325 -4.5544 -1.0795 9 7 3.9246 -4.6348 -3.2642 10 6 4.4791 -5.9868 -3.1591 11 1 3.9404 -6.5417 -2.3911 12 6 4.3334 -6.7035 -4.5030 13 6 5.0895 -5.9245 -5.5811 14 6 6.5703 -5.8406 -5.2057 15 1 6.9828 -6.8465 -5.1276 16 8 7.2767 -5.1136 -6.2129 17 6 6.7161 -5.1239 -3.8619 18 6 5.9599 -5.9029 -2.7837 19 6 2.8514 -2.0036 -3.5086 20 6 2.3287 -0.7314 -3.6017 21 6 1.8733 -0.0815 -2.4650 22 9 1.3669 1.1672 -2.5610 23 1 -0.3933 0.4416 -0.7650 24 1 1.7924 -0.5139 0.8900 25 1 1.5880 2.4585 -1.2243 26 1 1.5615 2.4678 1.2084 27 1 2.4999 -2.4698 -0.1636 28 1 3.8801 -4.1945 -4.1273 29 1 4.7455 -7.7096 -4.4248 30 1 3.2783 -6.7631 -4.7704 31 1 4.9853 -6.4348 -6.5386 32 1 4.6769 -4.9186 -5.6592 33 1 8.2236 -5.0214 -6.0403 34 1 7.7710 -5.0646 -3.5943 35 1 6.3035 -4.1180 -3.9399 36 1 6.0637 -5.3923 -1.8264 37 1 6.3725 -6.9088 -2.7060 38 1 3.2090 -2.5077 -4.3943 39 1 2.2782 -0.2384 -4.5613 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12892148_12496548.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:53:47 Heat of formation + Delta-G solvation = -129.669734 kcal Electronic energy + Delta-G solvation = -24284.195762 eV Core-core repulsion = 20493.781881 eV Total energy + Delta-G solvation = -3790.413881 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 296.126 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.49542 -41.68608 -40.30740 -39.22059 -37.83711 -36.97317 -34.32312 -32.84250 -31.98151 -31.85761 -29.65518 -27.01853 -25.19035 -23.76262 -23.55110 -23.12484 -21.78986 -20.27537 -19.37704 -18.89654 -18.22658 -18.04090 -17.88266 -17.17758 -16.81351 -16.68101 -16.27780 -15.95309 -15.64280 -15.51708 -15.07874 -15.05194 -14.71688 -14.67028 -14.17671 -13.96740 -13.93331 -13.83581 -13.40153 -13.26005 -12.98722 -12.80891 -12.37339 -12.20893 -12.16749 -11.74975 -11.35751 -11.21929 -11.17633 -10.88100 -10.74131 -10.22855 -10.13712 -9.83564 -4.98392 -0.53810 -0.00366 1.18281 1.55460 1.57803 1.92184 2.04171 2.54306 2.94541 3.21276 3.26386 3.43161 3.51238 3.58317 3.69287 3.72451 3.93225 4.04675 4.06856 4.09283 4.20895 4.31030 4.38560 4.45093 4.51196 4.60453 4.62646 4.74968 4.86724 4.88941 4.95709 4.99342 5.06328 5.08803 5.12059 5.15548 5.28438 5.33033 5.46337 5.57672 6.29322 6.41974 6.88186 7.09949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.543 6.543 2 C -0.083 4.083 3 Si 0.749 3.251 4 C -0.154 4.154 5 C -0.020 4.020 6 C -0.153 4.153 7 C 0.560 3.440 8 O -0.574 6.574 9 N -0.705 5.705 10 C 0.142 3.858 11 H 0.078 0.922 12 C -0.117 4.117 13 C -0.115 4.115 14 C 0.103 3.897 15 H 0.062 0.938 16 O -0.587 6.587 17 C -0.144 4.144 18 C -0.126 4.126 19 C -0.042 4.042 20 C -0.146 4.146 21 C 0.109 3.891 22 F -0.130 7.130 23 H 0.384 0.616 24 H 0.130 0.870 25 H -0.252 1.252 26 H -0.306 1.306 27 H 0.141 0.859 28 H 0.411 0.589 29 H 0.094 0.906 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.393 0.607 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.052 0.948 37 H 0.085 0.915 38 H 0.168 0.832 39 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.160 -1.421 -5.523 7.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.351 6.351 2 C -0.191 4.191 3 Si 0.653 3.347 4 C -0.155 4.155 5 C -0.040 4.040 6 C -0.156 4.156 7 C 0.348 3.652 8 O -0.454 6.454 9 N -0.358 5.358 10 C 0.038 3.962 11 H 0.096 0.904 12 C -0.155 4.155 13 C -0.153 4.153 14 C 0.044 3.956 15 H 0.080 0.920 16 O -0.395 6.395 17 C -0.182 4.182 18 C -0.165 4.165 19 C -0.061 4.061 20 C -0.165 4.165 21 C 0.090 3.910 22 F -0.108 7.108 23 H 0.233 0.767 24 H 0.148 0.852 25 H -0.177 1.177 26 H -0.234 1.234 27 H 0.159 0.841 28 H 0.250 0.750 29 H 0.112 0.888 30 H 0.104 0.896 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.242 0.758 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.071 0.929 37 H 0.104 0.896 38 H 0.185 0.815 39 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 3.479 -1.248 -4.516 5.835 hybrid contribution -0.729 0.267 -0.199 0.802 sum 2.749 -0.981 -4.714 5.545 Atomic orbital electron populations 1.86622 1.18123 1.80286 1.50053 1.25170 0.83602 1.12127 0.98241 0.94643 0.90297 0.72744 0.77052 1.20153 1.04502 0.96318 0.94559 1.21020 0.92116 0.91601 0.99222 1.20020 1.05394 0.94971 0.95218 1.18335 0.77130 0.85592 0.84125 1.90793 1.57835 1.68036 1.28766 1.45963 1.62117 1.17531 1.10158 1.21049 0.93915 0.82315 0.98924 0.90413 1.21775 1.01964 0.99870 0.91893 1.21499 0.93025 1.01461 0.99275 1.21872 0.93095 0.94305 0.86305 0.91975 1.86468 1.26386 1.78051 1.48615 1.22178 1.01033 0.99992 0.94958 1.21839 0.94580 1.01811 0.98269 1.21462 0.94229 0.93521 0.96863 1.21387 1.00621 0.95840 0.98634 1.18096 0.97773 0.80298 0.94869 1.91557 1.84841 1.37973 1.96439 0.76733 0.85173 1.17711 1.23443 0.84144 0.75031 0.88779 0.89630 0.90643 0.91091 0.75775 0.91071 0.91642 0.92917 0.89605 0.81487 0.81173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -2.74 12.88 -148.98 -1.92 -4.66 16 2 C -0.08 -0.13 2.81 71.24 0.20 0.07 16 3 Si 0.75 0.51 30.80 68.60 2.11 2.63 16 4 C -0.15 -0.12 4.78 -19.86 -0.09 -0.22 16 5 C -0.02 -0.04 9.21 22.52 0.21 0.17 16 6 C -0.15 0.01 5.87 -20.09 -0.12 -0.11 16 7 C 0.56 1.69 7.73 86.75 0.67 2.36 16 8 O -0.57 -6.54 16.01 -3.93 -0.06 -6.60 16 9 N -0.70 2.23 4.18 -445.52 -1.86 0.36 16 10 C 0.14 -0.42 2.78 44.99 0.13 -0.30 16 11 H 0.08 0.08 7.58 -2.39 -0.02 0.07 16 12 C -0.12 0.84 5.61 30.60 0.17 1.01 16 13 C -0.11 0.71 5.40 30.59 0.17 0.88 16 14 C 0.10 -0.51 3.47 30.59 0.11 -0.40 16 15 H 0.06 -0.36 8.14 -2.39 -0.02 -0.38 16 16 O -0.59 1.37 13.32 -148.98 -1.98 -0.61 16 17 C -0.14 0.67 5.39 30.60 0.16 0.84 16 18 C -0.13 0.35 5.60 30.59 0.17 0.52 16 19 C -0.04 0.25 9.54 22.52 0.21 0.46 16 20 C -0.15 0.72 10.01 22.27 0.22 0.95 16 21 C 0.11 -0.07 6.63 22.47 0.15 0.08 16 22 F -0.13 -0.21 12.57 44.97 0.57 0.35 16 23 H 0.38 -0.02 8.44 -74.06 -0.63 -0.64 16 24 H 0.13 -0.03 7.77 -2.38 -0.02 -0.05 16 25 H -0.25 -1.01 5.26 99.48 0.52 -0.49 16 26 H -0.31 -2.55 7.11 99.48 0.71 -1.84 16 27 H 0.14 0.47 7.58 -2.91 -0.02 0.45 16 28 H 0.41 -3.36 4.89 -92.71 -0.45 -3.81 16 29 H 0.09 -0.79 8.14 -2.39 -0.02 -0.81 16 30 H 0.09 -0.67 8.14 -2.38 -0.02 -0.69 16 31 H 0.07 -0.40 8.14 -2.39 -0.02 -0.42 16 32 H 0.07 -0.51 6.51 -2.39 -0.02 -0.53 16 33 H 0.39 -3.54 9.08 -74.06 -0.67 -4.22 16 34 H 0.07 -0.38 8.14 -2.39 -0.02 -0.40 16 35 H 0.06 -0.22 7.60 -2.39 -0.02 -0.24 16 36 H 0.05 0.11 8.14 -2.39 -0.02 0.09 16 37 H 0.09 -0.41 8.14 -2.39 -0.02 -0.43 16 38 H 0.17 -2.08 6.40 -2.91 -0.02 -2.10 16 39 H 0.17 -1.65 8.06 -2.91 -0.02 -1.67 16 Total: 0.00 -18.74 317.87 -1.59 -20.32 By element: Atomic # 1 Polarization: -17.32 SS G_CDS: -0.79 Total: -18.11 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: 2.36 Total: 6.32 kcal Atomic # 7 Polarization: 2.23 SS G_CDS: -1.86 Total: 0.36 kcal Atomic # 8 Polarization: -7.91 SS G_CDS: -3.97 Total: -11.88 kcal Atomic # 9 Polarization: -0.21 SS G_CDS: 0.57 Total: 0.35 kcal Atomic # 14 Polarization: 0.51 SS G_CDS: 2.11 Total: 2.63 kcal Total: -18.74 -1.59 -20.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12892148_12496548.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.346 kcal (2) G-P(sol) polarization free energy of solvation -18.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds