Wall clock time and date at job start Sat Mar 6 2021 23:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86295 * 109.47133 * 2 1 4 4 C 1.50699 * 109.47324 * 120.00190 * 2 1 3 5 5 C 1.38336 * 119.87218 * 64.99982 * 4 2 1 6 6 C 1.38002 * 120.12714 * 180.02562 * 5 4 2 7 7 C 1.39403 * 119.86952 * 359.97438 * 6 5 4 8 8 C 1.48282 * 120.12414 * 180.02562 * 7 6 5 9 9 C 1.39498 * 119.97227 * 180.02562 * 8 7 6 10 10 C 1.37671 * 120.02163 * 180.02562 * 9 8 7 11 11 C 1.39700 * 119.97374 * 359.97438 * 10 9 8 12 12 C 1.47730 * 120.02360 * 179.97438 * 11 10 9 13 13 O 1.21573 * 119.99415 * 0.02562 * 12 11 10 14 14 N 1.34774 * 119.99867 * 180.02562 * 12 11 10 15 15 C 1.46496 * 119.99635 * 180.02562 * 14 12 11 16 16 H 1.08997 * 109.47390 * 34.99568 * 15 14 12 17 17 C 1.53000 * 109.47504 * 154.99997 * 15 14 12 18 18 C 1.52998 * 109.47079 * 59.99342 * 17 15 14 19 19 C 1.52999 * 109.46788 * 60.00646 * 18 17 15 20 20 H 1.08997 * 109.47286 * 59.99783 * 19 18 17 21 21 O 1.42903 * 109.47256 * 180.02562 * 19 18 17 22 22 C 1.53003 * 109.47142 * 299.99504 * 19 18 17 23 23 C 1.52999 * 109.47088 * 274.99795 * 15 14 12 24 24 C 1.39707 * 119.95387 * 0.25848 * 11 10 9 25 25 C 1.37662 * 119.97498 * 359.46379 * 24 11 10 26 26 C 1.39400 * 119.74566 * 0.27932 * 7 6 5 27 27 C 1.37997 * 119.87217 * 359.47246 * 26 7 6 28 28 H 0.96701 * 114.00203 * 299.99849 * 1 2 3 29 29 H 1.09004 * 109.46507 * 240.00173 * 2 1 3 30 30 H 1.48500 * 110.00183 * 178.68626 * 3 2 1 31 31 H 1.48501 * 110.00141 * 300.00258 * 3 2 1 32 32 H 1.08001 * 119.93393 * 359.97316 * 5 4 2 33 33 H 1.07994 * 120.06140 * 179.97438 * 6 5 4 34 34 H 1.08004 * 119.99172 * 359.97006 * 9 8 7 35 35 H 1.07995 * 120.00699 * 180.02562 * 10 9 8 36 36 H 0.97000 * 120.00416 * 0.02562 * 14 12 11 37 37 H 1.09009 * 109.46884 * 299.99818 * 17 15 14 38 38 H 1.08997 * 109.47412 * 179.97438 * 17 15 14 39 39 H 1.08997 * 109.47384 * 300.00489 * 18 17 15 40 40 H 1.08997 * 109.47329 * 180.02562 * 18 17 15 41 41 H 0.96700 * 114.00311 * 180.02562 * 21 19 18 42 42 H 1.08999 * 109.47269 * 180.02562 * 22 19 18 43 43 H 1.08997 * 109.47258 * 300.00296 * 22 19 18 44 44 H 1.08999 * 109.47350 * 60.00063 * 23 15 14 45 45 H 1.08997 * 109.47286 * 180.02562 * 23 15 14 46 46 H 1.08004 * 120.01129 * 179.72266 * 24 11 10 47 47 H 1.08004 * 119.99273 * 180.27620 * 25 24 11 48 48 H 1.08007 * 120.06272 * 179.71847 * 26 7 6 49 49 H 1.08004 * 119.93666 * 180.27454 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7564 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 1.6831 -2.0613 1.3957 6 6 2.1402 -2.7170 2.5207 7 6 2.8539 -2.0155 3.4912 8 6 3.3482 -2.7145 4.7019 9 6 4.0616 -2.0094 5.6713 10 6 4.5214 -2.6575 6.7955 11 6 4.2730 -4.0217 6.9654 12 6 4.7664 -4.7184 8.1710 13 8 5.3886 -4.1044 9.0159 14 7 4.5269 -6.0346 8.3341 15 6 5.0157 -6.7253 9.5300 16 1 4.9683 -6.0503 10.3844 17 6 4.1449 -7.9536 9.8014 18 6 4.2115 -8.9012 8.6020 19 6 5.6597 -9.3419 8.3802 20 1 6.0235 -9.8558 9.2699 21 8 5.7222 -10.2264 7.2596 22 6 6.5307 -8.1136 8.1087 23 6 6.4640 -7.1660 9.3081 24 6 3.5626 -4.7279 5.9915 25 6 3.0988 -4.0767 4.8709 26 6 3.0964 -0.6533 3.3217 27 6 2.6388 -0.0092 2.1903 28 1 -0.3934 0.4417 0.7651 29 1 1.7922 -0.5138 -0.8901 30 1 3.5345 1.7703 0.0320 31 1 1.5614 2.4679 -1.2085 32 1 1.1297 -2.6035 0.6433 33 1 1.9454 -3.7714 2.6488 34 1 4.2539 -0.9548 5.5396 35 1 5.0733 -2.1113 7.5461 36 1 4.0308 -6.5246 7.6598 37 1 3.1130 -7.6397 9.9595 38 1 4.5089 -8.4678 10.6909 39 1 3.8477 -8.3873 7.7123 40 1 3.5907 -9.7760 8.7952 41 1 6.6126 -10.5468 7.0604 42 1 7.5624 -8.4276 7.9502 43 1 6.1670 -7.5997 7.2190 44 1 7.0845 -6.2910 9.1148 45 1 6.8276 -7.6803 10.1977 46 1 3.3739 -5.7836 6.1198 47 1 2.5457 -4.6214 4.1200 48 1 3.6449 -0.1038 4.0726 49 1 2.8300 1.0452 2.0558 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12892148_13158362.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:54:04 Heat of formation + Delta-G solvation = -68.280810 kcal Electronic energy + Delta-G solvation = -30214.600492 eV Core-core repulsion = 26072.322811 eV Total energy + Delta-G solvation = -4142.277682 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.166 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.69261 -40.90645 -39.91235 -39.02142 -37.51904 -36.99762 -34.49374 -33.72435 -32.57001 -31.91409 -31.59860 -31.00519 -29.57489 -26.96829 -24.67725 -24.65196 -23.79740 -23.25935 -22.58114 -22.46300 -21.43685 -20.24733 -19.40288 -18.47809 -18.22032 -17.77598 -17.18897 -16.83257 -16.70602 -16.31736 -16.24763 -15.93325 -15.75019 -15.44181 -15.35453 -15.04838 -14.93627 -14.86720 -14.74096 -14.32631 -14.22510 -14.09656 -14.05979 -13.91968 -13.58465 -13.29934 -13.19756 -12.85852 -12.73798 -12.54631 -12.25327 -12.20246 -12.11440 -11.95911 -11.78082 -11.60924 -11.23140 -11.10423 -10.80598 -10.75419 -10.41817 -10.15327 -10.08367 -9.96419 -9.08556 -5.01402 -0.70232 0.32911 0.39773 0.49319 1.30236 1.62259 1.78231 1.95553 2.06547 2.59844 3.00014 3.22625 3.38898 3.53400 3.59056 3.63145 3.68480 3.69128 3.79192 3.85788 3.98676 4.01232 4.03367 4.06386 4.17916 4.25007 4.27295 4.33990 4.36393 4.41119 4.47135 4.47288 4.58302 4.63913 4.67071 4.84629 4.86870 4.90549 4.96612 5.01803 5.07478 5.08036 5.10182 5.13413 5.19304 5.24197 5.26366 5.28969 5.40400 5.45942 5.49402 5.64250 5.78111 5.92450 6.42180 6.75658 6.84222 7.10522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.555 6.555 2 C -0.074 4.074 3 Si 0.773 3.227 4 C -0.119 4.119 5 C -0.103 4.103 6 C -0.109 4.109 7 C -0.060 4.060 8 C -0.022 4.022 9 C -0.121 4.121 10 C -0.069 4.069 11 C -0.153 4.153 12 C 0.556 3.444 13 O -0.578 6.578 14 N -0.706 5.706 15 C 0.141 3.859 16 H 0.078 0.922 17 C -0.116 4.116 18 C -0.115 4.115 19 C 0.104 3.896 20 H 0.065 0.935 21 O -0.587 6.587 22 C -0.144 4.144 23 C -0.126 4.126 24 C -0.077 4.077 25 C -0.121 4.121 26 C -0.106 4.106 27 C -0.118 4.118 28 H 0.395 0.605 29 H 0.106 0.894 30 H -0.287 1.287 31 H -0.301 1.301 32 H 0.131 0.869 33 H 0.144 0.856 34 H 0.151 0.849 35 H 0.130 0.870 36 H 0.409 0.591 37 H 0.085 0.915 38 H 0.096 0.904 39 H 0.067 0.933 40 H 0.077 0.923 41 H 0.393 0.607 42 H 0.071 0.929 43 H 0.060 0.940 44 H 0.049 0.951 45 H 0.088 0.912 46 H 0.150 0.850 47 H 0.154 0.846 48 H 0.148 0.852 49 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.701 -1.894 0.932 2.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.363 6.363 2 C -0.184 4.184 3 Si 0.680 3.320 4 C -0.119 4.119 5 C -0.121 4.121 6 C -0.126 4.126 7 C -0.060 4.060 8 C -0.022 4.022 9 C -0.138 4.138 10 C -0.088 4.088 11 C -0.156 4.156 12 C 0.345 3.655 13 O -0.460 6.460 14 N -0.359 5.359 15 C 0.037 3.963 16 H 0.096 0.904 17 C -0.154 4.154 18 C -0.153 4.153 19 C 0.045 3.955 20 H 0.083 0.917 21 O -0.395 6.395 22 C -0.182 4.182 23 C -0.165 4.165 24 C -0.095 4.095 25 C -0.138 4.138 26 C -0.124 4.124 27 C -0.135 4.135 28 H 0.245 0.755 29 H 0.124 0.876 30 H -0.214 1.214 31 H -0.230 1.230 32 H 0.148 0.852 33 H 0.162 0.838 34 H 0.168 0.832 35 H 0.148 0.852 36 H 0.248 0.752 37 H 0.104 0.896 38 H 0.114 0.886 39 H 0.086 0.914 40 H 0.096 0.904 41 H 0.242 0.758 42 H 0.089 0.911 43 H 0.079 0.921 44 H 0.068 0.932 45 H 0.106 0.894 46 H 0.168 0.832 47 H 0.171 0.829 48 H 0.166 0.834 49 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -1.345 -1.114 0.584 1.842 hybrid contribution 0.761 -0.776 -0.549 1.218 sum -0.583 -1.891 0.035 1.979 Atomic orbital electron populations 1.86474 1.17154 1.82168 1.50519 1.25165 0.85337 1.10675 0.97229 0.93763 0.77866 0.75520 0.84896 1.20533 0.99349 0.95149 0.96910 1.21104 0.99056 0.94059 0.97896 1.21510 0.96971 1.00952 0.93202 1.18928 0.99212 0.93933 0.93910 1.19141 0.96073 0.93793 0.93228 1.21408 0.98094 1.01333 0.92998 1.21267 0.96890 0.93277 0.97385 1.20026 1.04231 0.95311 0.95993 1.18544 0.78740 0.82355 0.85869 1.90765 1.42601 1.67238 1.45347 1.45988 1.57072 1.08457 1.24406 1.21056 0.93759 0.93959 0.87540 0.90418 1.21773 1.00780 0.93813 0.99044 1.21499 0.95339 0.99828 0.98599 1.21867 0.96082 0.88923 0.88589 0.91692 1.86470 1.36016 1.65898 1.51150 1.22181 1.00702 0.96788 0.98551 1.21839 0.96175 0.98998 0.99460 1.21410 0.95050 1.00542 0.92542 1.21448 1.00363 0.93660 0.98359 1.21496 0.99222 0.93618 0.98043 1.21141 0.98336 1.00223 0.93818 0.75461 0.87636 1.21369 1.22973 0.85150 0.83822 0.83155 0.85246 0.75194 0.89608 0.88570 0.91423 0.90438 0.75774 0.91063 0.92086 0.93220 0.89371 0.83248 0.82881 0.83425 0.83557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.18 12.83 -148.98 -1.91 -1.73 16 2 C -0.07 0.08 2.80 71.24 0.20 0.28 16 3 Si 0.77 -1.95 29.79 68.60 2.04 0.10 16 4 C -0.12 0.11 5.36 -19.82 -0.11 0.00 16 5 C -0.10 0.03 9.67 22.24 0.21 0.24 16 6 C -0.11 0.14 9.43 22.49 0.21 0.35 16 7 C -0.06 0.03 5.88 -20.04 -0.12 -0.09 16 8 C -0.02 0.00 5.88 -20.00 -0.12 -0.12 16 9 C -0.12 -0.04 9.41 22.44 0.21 0.17 16 10 C -0.07 -0.26 9.58 22.49 0.22 -0.04 16 11 C -0.15 -0.51 5.88 -20.06 -0.12 -0.63 16 12 C 0.56 3.49 7.73 86.75 0.67 4.16 16 13 O -0.58 -8.24 16.00 -3.95 -0.06 -8.30 16 14 N -0.71 0.05 4.18 -445.53 -1.86 -1.81 16 15 C 0.14 -0.10 2.78 44.99 0.13 0.02 16 16 H 0.08 0.24 7.58 -2.39 -0.02 0.22 16 17 C -0.12 0.63 5.61 30.59 0.17 0.80 16 18 C -0.11 0.50 5.40 30.59 0.17 0.66 16 19 C 0.10 -0.33 3.47 30.59 0.11 -0.23 16 20 H 0.07 -0.30 8.14 -2.39 -0.02 -0.32 16 21 O -0.59 0.38 13.32 -148.98 -1.98 -1.60 16 22 C -0.14 0.34 5.39 30.60 0.16 0.51 16 23 C -0.13 0.08 5.60 30.59 0.17 0.25 16 24 C -0.08 0.14 9.52 22.49 0.21 0.35 16 25 C -0.12 0.26 9.41 22.44 0.21 0.47 16 26 C -0.11 0.22 9.43 22.49 0.21 0.43 16 27 C -0.12 0.31 8.65 22.23 0.19 0.50 16 28 H 0.40 -3.29 8.70 -74.06 -0.64 -3.93 16 29 H 0.11 0.02 7.96 -2.39 -0.02 0.00 16 30 H -0.29 -0.68 7.11 99.48 0.71 0.03 16 31 H -0.30 -1.62 7.11 99.48 0.71 -0.91 16 32 H 0.13 -0.16 8.06 -2.91 -0.02 -0.18 16 33 H 0.14 -0.75 6.19 -2.91 -0.02 -0.77 16 34 H 0.15 -0.60 6.19 -2.91 -0.02 -0.62 16 35 H 0.13 0.65 7.64 -2.91 -0.02 0.63 16 36 H 0.41 -1.86 4.88 -92.71 -0.45 -2.31 16 37 H 0.09 -0.54 8.14 -2.38 -0.02 -0.55 16 38 H 0.10 -0.70 8.14 -2.39 -0.02 -0.72 16 39 H 0.07 -0.31 6.51 -2.39 -0.02 -0.33 16 40 H 0.08 -0.30 8.14 -2.39 -0.02 -0.32 16 41 H 0.39 -2.94 9.08 -74.06 -0.67 -3.61 16 42 H 0.07 -0.23 8.14 -2.39 -0.02 -0.25 16 43 H 0.06 -0.02 7.60 -2.39 -0.02 -0.04 16 44 H 0.05 0.23 8.14 -2.39 -0.02 0.21 16 45 H 0.09 -0.28 8.14 -2.39 -0.02 -0.30 16 46 H 0.15 -1.10 6.39 -2.91 -0.02 -1.12 16 47 H 0.15 -1.03 6.19 -2.91 -0.02 -1.05 16 48 H 0.15 -0.89 6.19 -2.91 -0.02 -0.91 16 49 H 0.15 -1.01 4.89 -2.91 -0.01 -1.02 16 Total: 0.00 -21.90 388.23 -1.49 -23.40 By element: Atomic # 1 Polarization: -17.45 SS G_CDS: -0.71 Total: -18.16 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: 3.00 Total: 8.11 kcal Atomic # 7 Polarization: 0.05 SS G_CDS: -1.86 Total: -1.81 kcal Atomic # 8 Polarization: -7.67 SS G_CDS: -3.96 Total: -11.63 kcal Atomic # 14 Polarization: -1.95 SS G_CDS: 2.04 Total: 0.10 kcal Total: -21.90 -1.49 -23.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12892148_13158362.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.883 kcal (2) G-P(sol) polarization free energy of solvation -21.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds