Wall clock time and date at job start Sat Mar 6 2021 23:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86305 * 109.46645 * 2 1 4 4 C 1.50699 * 109.47152 * 119.99802 * 2 1 3 5 5 C 1.38898 * 119.67263 * 244.72876 * 4 2 1 6 6 C 1.36477 * 120.61410 * 179.76190 * 5 4 2 7 7 C 1.40064 * 119.82586 * 0.50894 * 6 5 4 8 8 C 1.41596 * 133.37748 * 179.74350 * 7 6 5 9 9 C 1.35865 * 107.72527 * 180.02562 * 8 7 6 10 10 C 1.47059 * 125.42472 * 180.02562 * 9 8 7 11 11 O 1.21654 * 119.99870 * 359.97438 * 10 9 8 12 12 N 1.34778 * 120.00107 * 179.97438 * 10 9 8 13 13 C 1.46504 * 119.99817 * 179.97438 * 12 10 9 14 14 H 1.09000 * 109.46991 * 35.00118 * 13 12 10 15 15 C 1.53001 * 109.46649 * 154.99874 * 13 12 10 16 16 C 1.53000 * 109.47124 * 59.99997 * 15 13 12 17 17 C 1.53007 * 109.47314 * 59.99881 * 16 15 13 18 18 H 1.09000 * 109.46743 * 59.99637 * 17 16 15 19 19 O 1.42894 * 109.47064 * 180.02562 * 17 16 15 20 20 C 1.53008 * 109.46844 * 300.00171 * 17 16 15 21 21 C 1.53000 * 109.47305 * 59.99823 * 20 17 16 22 22 N 1.38146 * 109.14980 * 0.02562 * 9 8 7 23 23 C 1.37488 * 108.78833 * 359.97438 * 22 9 8 24 24 C 1.37708 * 119.67530 * 65.00131 * 4 2 1 25 25 H 0.96700 * 114.00311 * 60.00382 * 1 2 3 26 26 H 1.08997 * 109.47332 * 240.00042 * 2 1 3 27 27 H 1.48499 * 109.99670 * 298.67876 * 3 2 1 28 28 H 1.48497 * 110.00233 * 59.99845 * 3 2 1 29 29 H 1.08001 * 119.69406 * 0.02562 * 5 4 2 30 30 H 1.08001 * 120.08424 * 180.25309 * 6 5 4 31 31 H 1.08003 * 126.13529 * 0.02562 * 8 7 6 32 32 H 0.97000 * 119.99573 * 359.97438 * 12 10 9 33 33 H 1.09001 * 109.46849 * 179.97438 * 15 13 12 34 34 H 1.09001 * 109.47399 * 300.00084 * 15 13 12 35 35 H 1.08996 * 109.47220 * 179.97438 * 16 15 13 36 36 H 1.09000 * 109.47512 * 299.99989 * 16 15 13 37 37 H 0.96713 * 113.99630 * 180.02562 * 19 17 16 38 38 H 1.09002 * 109.46620 * 180.02562 * 20 17 16 39 39 H 1.08997 * 109.46665 * 299.99685 * 20 17 16 40 40 H 1.08996 * 109.47220 * 180.02562 * 21 20 17 41 41 H 1.09004 * 109.47050 * 59.99720 * 21 20 17 42 42 H 0.96995 * 125.60423 * 179.97438 * 22 9 8 43 43 H 1.07997 * 120.09449 * 359.95867 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7566 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 2.6463 -0.0035 2.1888 6 6 3.1060 -0.6265 3.3127 7 6 2.8654 -1.9936 3.4992 8 6 3.2032 -2.9094 4.5249 9 6 2.7047 -4.1241 4.1756 10 6 2.8322 -5.3573 4.9665 11 8 3.4247 -5.3401 6.0289 12 7 2.2927 -6.5067 4.5144 13 6 2.4202 -7.7353 5.3021 14 1 2.3797 -7.4921 6.3638 15 6 1.2738 -8.6864 4.9527 16 6 1.3306 -9.0277 3.4623 17 6 2.6670 -9.7013 3.1439 18 1 2.7618 -10.6154 3.7300 19 8 2.7203 -10.0196 1.7519 20 6 3.8135 -8.7502 3.4934 21 6 3.7567 -8.4088 4.9837 22 7 2.0590 -4.0161 2.9591 23 6 2.1458 -2.7143 2.5257 24 6 1.6819 -2.0551 1.3910 25 1 -0.3934 0.4416 -0.7651 26 1 1.7924 -0.5138 -0.8899 27 1 1.5877 2.4585 -1.2243 28 1 1.5613 2.4680 1.2084 29 1 2.8365 1.0499 2.0453 30 1 3.6575 -0.0676 4.0543 31 1 3.7577 -2.6830 5.4237 32 1 1.8200 -6.5203 3.6675 33 1 1.3689 -9.6007 5.5384 34 1 0.3217 -8.2065 5.1794 35 1 0.5141 -9.7056 3.2135 36 1 1.2358 -8.1136 2.8763 37 1 3.5416 -10.4505 1.4781 38 1 4.7655 -9.2299 3.2661 39 1 3.7186 -7.8361 2.9074 40 1 4.5731 -7.7309 5.2326 41 1 3.8515 -9.3230 5.5698 42 1 1.6171 -4.7398 2.4882 43 1 1.1283 -2.5968 0.6383 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12892148_13158378.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:54:08 Heat of formation + Delta-G solvation = -61.114102 kcal Electronic energy + Delta-G solvation = -26324.440492 eV Core-core repulsion = 22529.037571 eV Total energy + Delta-G solvation = -3795.402921 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.75079 -41.24798 -39.61460 -38.84130 -37.11343 -37.04980 -34.25552 -33.32897 -31.94787 -31.34066 -30.46312 -29.80526 -26.89031 -24.59830 -23.83641 -23.40387 -23.02912 -21.97064 -21.37915 -20.33717 -19.73415 -18.54795 -18.25729 -18.01435 -17.33943 -16.85118 -16.82247 -16.49649 -16.18167 -15.74932 -15.38613 -15.31348 -15.09099 -14.85638 -14.72920 -14.62454 -14.29561 -14.13450 -13.99408 -13.88897 -13.52357 -13.33300 -12.89598 -12.74627 -12.33919 -12.29099 -12.25119 -12.14819 -11.82820 -11.68711 -11.42751 -11.26129 -10.98536 -10.81274 -10.46349 -10.28974 -9.35691 -8.85163 -4.87653 -0.39412 0.50092 0.91950 1.32482 1.63721 1.72881 1.93826 1.99730 2.15063 2.70836 3.19507 3.39962 3.49925 3.61248 3.64786 3.65483 3.85622 3.97140 3.99913 4.02348 4.13994 4.19594 4.28451 4.30584 4.37367 4.41567 4.43352 4.45813 4.54609 4.61455 4.81617 4.86335 4.91777 4.96415 4.99889 5.04435 5.06977 5.18001 5.25259 5.28006 5.37263 5.39129 5.52400 5.56022 5.95322 6.20583 6.38154 6.60790 6.81953 6.91297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.558 6.558 2 C -0.084 4.084 3 Si 0.766 3.234 4 C -0.051 4.051 5 C -0.150 4.150 6 C -0.058 4.058 7 C -0.134 4.134 8 C -0.116 4.116 9 C 0.008 3.992 10 C 0.587 3.413 11 O -0.557 6.557 12 N -0.707 5.707 13 C 0.142 3.858 14 H 0.083 0.917 15 C -0.117 4.117 16 C -0.115 4.115 17 C 0.103 3.897 18 H 0.066 0.934 19 O -0.588 6.588 20 C -0.144 4.144 21 C -0.127 4.127 22 N -0.565 5.565 23 C 0.107 3.893 24 C -0.111 4.111 25 H 0.395 0.605 26 H 0.098 0.902 27 H -0.287 1.287 28 H -0.298 1.298 29 H 0.143 0.857 30 H 0.150 0.850 31 H 0.157 0.843 32 H 0.406 0.594 33 H 0.099 0.901 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.065 0.935 37 H 0.393 0.607 38 H 0.072 0.928 39 H 0.058 0.942 40 H 0.053 0.947 41 H 0.091 0.909 42 H 0.429 0.571 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.870 -2.644 -4.060 4.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.368 6.368 2 C -0.193 4.193 3 Si 0.671 3.329 4 C -0.053 4.053 5 C -0.168 4.168 6 C -0.076 4.076 7 C -0.139 4.139 8 C -0.143 4.143 9 C -0.101 4.101 10 C 0.374 3.626 11 O -0.435 6.435 12 N -0.359 5.359 13 C 0.038 3.962 14 H 0.102 0.898 15 C -0.155 4.155 16 C -0.153 4.153 17 C 0.045 3.955 18 H 0.084 0.916 19 O -0.396 6.396 20 C -0.182 4.182 21 C -0.165 4.165 22 N -0.171 5.171 23 C -0.004 4.004 24 C -0.132 4.132 25 H 0.246 0.754 26 H 0.116 0.884 27 H -0.214 1.214 28 H -0.226 1.226 29 H 0.161 0.839 30 H 0.167 0.833 31 H 0.175 0.825 32 H 0.243 0.757 33 H 0.117 0.883 34 H 0.103 0.897 35 H 0.095 0.905 36 H 0.083 0.917 37 H 0.243 0.757 38 H 0.091 0.909 39 H 0.077 0.923 40 H 0.072 0.928 41 H 0.109 0.891 42 H 0.269 0.731 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 0.520 -2.073 -2.767 3.496 hybrid contribution -0.952 -0.642 -0.996 1.520 sum -0.432 -2.715 -3.763 4.660 Atomic orbital electron populations 1.86554 1.18447 1.80719 1.51105 1.25004 0.84101 1.11868 0.98298 0.93990 0.90439 0.72157 0.76270 1.19204 0.97588 0.92875 0.95627 1.20685 1.01256 1.00395 0.94500 1.20614 0.97791 0.91754 0.97477 1.18434 1.04345 0.95056 0.96058 1.21098 1.02604 0.90476 1.00127 1.20046 1.05109 0.95736 0.89259 1.17265 0.78602 0.82390 0.84385 1.90852 1.43652 1.85679 1.23346 1.45957 1.56562 1.08197 1.25170 1.21126 0.95903 0.83130 0.96041 0.89841 1.21784 0.97829 0.99918 0.95939 1.21504 0.96745 1.01017 0.96039 1.21877 0.94919 0.96788 0.81939 0.91556 1.86471 1.45030 1.82731 1.25381 1.22182 0.99430 1.00287 0.96319 1.21854 0.96837 1.01264 0.96570 1.41782 1.48478 1.08980 1.17866 1.18434 1.00856 0.84395 0.96700 1.20007 1.02660 0.94244 0.96260 0.75444 0.88392 1.21449 1.22585 0.83930 0.83275 0.82508 0.75717 0.88303 0.89710 0.90502 0.91666 0.75711 0.90907 0.92285 0.92841 0.89081 0.73053 0.84610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.88 12.80 -148.98 -1.91 -2.79 16 2 C -0.08 0.10 2.78 71.24 0.20 0.29 16 3 Si 0.77 -1.74 29.81 68.60 2.05 0.30 16 4 C -0.05 -0.12 5.39 -19.83 -0.11 -0.23 16 5 C -0.15 -0.27 8.59 22.02 0.19 -0.08 16 6 C -0.06 -0.16 10.06 22.30 0.22 0.07 16 7 C -0.13 -0.75 6.16 -21.36 -0.13 -0.89 16 8 C -0.12 -0.74 10.53 22.55 0.24 -0.50 16 9 C 0.01 0.04 6.97 39.91 0.28 0.32 16 10 C 0.59 3.25 7.76 86.56 0.67 3.92 16 11 O -0.56 -7.23 16.50 -4.20 -0.07 -7.30 16 12 N -0.71 0.84 4.23 -446.12 -1.89 -1.04 16 13 C 0.14 -0.29 2.78 44.99 0.13 -0.16 16 14 H 0.08 0.11 7.58 -2.39 -0.02 0.10 16 15 C -0.12 0.74 5.61 30.59 0.17 0.91 16 16 C -0.12 0.57 5.40 30.60 0.17 0.74 16 17 C 0.10 -0.41 3.47 30.60 0.11 -0.30 16 18 H 0.07 -0.36 8.14 -2.39 -0.02 -0.38 16 19 O -0.59 0.73 13.32 -148.98 -1.98 -1.25 16 20 C -0.14 0.49 5.39 30.60 0.16 0.66 16 21 C -0.13 0.26 5.60 30.59 0.17 0.43 16 22 N -0.57 -0.29 6.07 -177.19 -1.08 -1.36 16 23 C 0.11 0.43 7.25 39.13 0.28 0.71 16 24 C -0.11 -0.31 9.69 22.37 0.22 -0.09 16 25 H 0.40 -2.55 8.74 -74.06 -0.65 -3.20 16 26 H 0.10 -0.53 7.96 -2.39 -0.02 -0.55 16 27 H -0.29 -0.50 7.11 99.48 0.71 0.20 16 28 H -0.30 -1.51 7.05 99.48 0.70 -0.81 16 29 H 0.14 -0.27 4.81 -2.91 -0.01 -0.28 16 30 H 0.15 -0.25 8.06 -2.91 -0.02 -0.28 16 31 H 0.16 0.87 8.06 -2.91 -0.02 0.84 16 32 H 0.41 -2.24 5.92 -92.71 -0.55 -2.79 16 33 H 0.10 -0.81 8.14 -2.39 -0.02 -0.83 16 34 H 0.08 -0.58 8.14 -2.39 -0.02 -0.60 16 35 H 0.08 -0.32 8.14 -2.39 -0.02 -0.34 16 36 H 0.06 -0.34 6.51 -2.39 -0.02 -0.36 16 37 H 0.39 -3.17 9.08 -74.05 -0.67 -3.85 16 38 H 0.07 -0.31 8.14 -2.39 -0.02 -0.33 16 39 H 0.06 -0.08 7.60 -2.39 -0.02 -0.10 16 40 H 0.05 0.16 8.14 -2.39 -0.02 0.14 16 41 H 0.09 -0.42 8.14 -2.38 -0.02 -0.44 16 42 H 0.43 -2.44 8.12 -92.71 -0.75 -3.19 16 43 H 0.14 -0.03 8.06 -2.91 -0.02 -0.05 16 Total: 0.00 -21.33 347.80 -3.42 -24.75 By element: Atomic # 1 Polarization: -15.58 SS G_CDS: -1.50 Total: -17.09 kcal Atomic # 6 Polarization: 2.82 SS G_CDS: 2.97 Total: 5.79 kcal Atomic # 7 Polarization: 0.56 SS G_CDS: -2.96 Total: -2.41 kcal Atomic # 8 Polarization: -7.38 SS G_CDS: -3.96 Total: -11.34 kcal Atomic # 14 Polarization: -1.74 SS G_CDS: 2.05 Total: 0.30 kcal Total: -21.33 -3.42 -24.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12892148_13158378.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.364 kcal (2) G-P(sol) polarization free energy of solvation -21.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds