Wall clock time and date at job start Sat Mar 6 2021 23:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86303 * 109.47268 * 2 1 4 4 C 1.50699 * 109.47070 * 239.99934 * 2 1 3 5 5 C 1.38324 * 119.87874 * 119.72320 * 4 2 1 6 6 C 1.38023 * 120.12117 * 179.76610 * 5 4 2 7 7 C 1.39343 * 119.87383 * 0.51263 * 6 5 4 8 8 C 1.48389 * 120.11671 * 179.72525 * 7 6 5 9 9 C 1.39314 * 120.12305 * 56.06431 * 8 7 6 10 10 C 1.50700 * 120.06310 * 359.97438 * 9 8 7 11 11 C 1.50703 * 109.47124 * 83.16623 * 10 9 8 12 12 O 1.21286 * 119.99695 * 5.68507 * 11 10 9 13 13 N 1.34769 * 120.00230 * 185.68903 * 11 10 9 14 14 C 1.46504 * 120.00144 * 180.02562 * 13 11 10 15 15 H 1.08999 * 109.46699 * 325.00248 * 14 13 11 16 16 C 1.52998 * 109.47279 * 84.99622 * 14 13 11 17 17 C 1.52992 * 109.47582 * 180.02562 * 16 14 13 18 18 C 1.53004 * 109.46857 * 300.00283 * 17 16 14 19 19 H 1.09004 * 109.46934 * 179.97438 * 18 17 16 20 20 O 1.42899 * 109.47056 * 299.99284 * 18 17 16 21 21 C 1.53001 * 109.47054 * 59.99830 * 18 17 16 22 22 C 1.52994 * 109.46930 * 299.99631 * 21 18 17 23 23 C 1.38043 * 119.87840 * 179.77198 * 9 8 7 24 24 C 1.38303 * 120.12011 * 0.50378 * 23 9 8 25 25 C 1.38342 * 120.24226 * 359.74430 * 24 23 9 26 26 C 1.38000 * 120.12425 * 0.02562 * 25 24 23 27 27 C 1.39339 * 119.76115 * 359.74247 * 7 6 5 28 28 C 1.38022 * 119.87591 * 0.02562 * 27 7 6 29 29 H 0.96700 * 114.00145 * 59.99520 * 1 2 3 30 30 H 1.08996 * 109.46803 * 120.00133 * 2 1 3 31 31 H 1.48493 * 109.99715 * 60.00196 * 3 2 1 32 32 H 1.48500 * 109.99685 * 181.31854 * 3 2 1 33 33 H 1.07999 * 119.93811 * 0.02562 * 5 4 2 34 34 H 1.07993 * 120.06165 * 180.28086 * 6 5 4 35 35 H 1.09001 * 109.47528 * 203.16708 * 10 9 8 36 36 H 1.09001 * 109.47106 * 323.17069 * 10 9 8 37 37 H 0.97000 * 120.00010 * 359.97438 * 13 11 10 38 38 H 1.09004 * 109.46967 * 300.00474 * 16 14 13 39 39 H 1.09000 * 109.47077 * 59.99951 * 16 14 13 40 40 H 1.09000 * 109.47702 * 179.97438 * 17 16 14 41 41 H 1.09000 * 109.47102 * 59.99786 * 17 16 14 42 42 H 0.96693 * 114.00126 * 300.00649 * 20 18 17 43 43 H 1.09004 * 109.46766 * 179.97438 * 21 18 17 44 44 H 1.09000 * 109.47433 * 60.00174 * 21 18 17 45 45 H 1.09000 * 109.47506 * 300.00499 * 22 21 18 46 46 H 1.09003 * 109.46988 * 180.02562 * 22 21 18 47 47 H 1.07999 * 119.94373 * 180.25723 * 23 9 8 48 48 H 1.08001 * 119.88047 * 179.72501 * 24 23 9 49 49 H 1.07996 * 119.93917 * 179.97438 * 25 24 23 50 50 H 1.07996 * 120.06748 * 180.02562 * 26 25 24 51 51 H 1.07994 * 120.05769 * 180.02562 * 27 7 6 52 52 H 1.07991 * 119.93567 * 179.97438 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 2.7216 -0.0341 -2.1422 6 6 3.1884 -0.6813 -3.2684 7 6 2.8532 -2.0153 -3.4914 8 6 3.3471 -2.7145 -4.7035 9 6 4.7134 -2.7720 -4.9696 10 6 5.6940 -2.1232 -4.0270 11 6 5.9850 -3.0593 -2.8824 12 8 5.5310 -4.1840 -2.8884 13 7 6.7497 -2.6468 -1.8521 14 6 7.0330 -3.5570 -0.7397 15 1 6.1643 -4.1897 -0.5577 16 6 8.2371 -4.4330 -1.0914 17 6 8.5326 -5.3840 0.0700 18 6 8.8436 -4.5710 1.3283 19 1 9.0538 -5.2486 2.1559 20 8 9.9827 -3.7417 1.0901 21 6 7.6395 -3.6951 1.6801 22 6 7.3441 -2.7441 0.5186 23 6 5.1675 -3.4278 -6.0962 24 6 4.2683 -4.0183 -6.9654 25 6 2.9101 -3.9598 -6.7087 26 6 2.4454 -3.3109 -5.5829 27 6 2.0524 -2.6902 -2.5723 28 6 1.5951 -2.0346 -1.4471 29 1 -0.3933 0.4418 -0.7650 30 1 1.7922 -0.5138 0.8900 31 1 1.5616 2.4678 1.2085 32 1 3.5346 1.7702 -0.0321 33 1 2.9774 1.0010 -1.9704 34 1 3.8091 -0.1537 -3.9773 35 1 6.6189 -1.9026 -4.5600 36 1 5.2680 -1.1976 -3.6399 37 1 7.1130 -1.7474 -1.8475 38 1 8.0153 -5.0125 -1.9877 39 1 9.1058 -3.8004 -1.2736 40 1 9.3902 -6.0085 -0.1808 41 1 7.6638 -6.0166 0.2517 42 1 10.7846 -4.2312 0.8612 43 1 7.8609 -3.1163 2.5768 44 1 6.7707 -4.3277 1.8618 45 1 8.2129 -2.1115 0.3369 46 1 6.4865 -2.1197 0.7694 47 1 6.2267 -3.4766 -6.3013 48 1 4.6276 -4.5266 -7.8479 49 1 2.2123 -4.4222 -7.3909 50 1 1.3850 -3.2661 -5.3832 51 1 1.7900 -3.7242 -2.7401 52 1 0.9740 -2.5566 -0.7343 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12892148_13158394.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:54:10 Heat of formation + Delta-G solvation = -72.447602 kcal Electronic energy + Delta-G solvation = -34090.795477 eV Core-core repulsion = 29792.799491 eV Total energy + Delta-G solvation = -4297.995986 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 368.182 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -41.60183 -40.80612 -39.90238 -39.32128 -37.56127 -36.67099 -34.47477 -34.11381 -33.43738 -31.97382 -31.88598 -30.76493 -30.13018 -28.28405 -26.56615 -24.12842 -23.86992 -23.68394 -23.35432 -22.46333 -21.72562 -21.36105 -20.77714 -18.62951 -18.14051 -17.99208 -17.72049 -17.41843 -16.86463 -16.75981 -16.58816 -16.31539 -16.19815 -15.86873 -15.59870 -15.49931 -15.44143 -14.91361 -14.75571 -14.59689 -14.44022 -14.23299 -14.12141 -13.92897 -13.71578 -13.64023 -13.30303 -13.27300 -13.24149 -13.06820 -12.93376 -12.50492 -12.36216 -12.26017 -12.09816 -12.03400 -11.89143 -11.66257 -11.61538 -11.30498 -11.04153 -10.70652 -10.48480 -10.14329 -10.07467 -9.96693 -9.74851 -9.22499 -4.99953 -0.10964 0.36010 0.40043 0.60392 1.30795 1.62530 1.63996 1.96218 2.15846 2.61120 2.86985 3.34833 3.45884 3.55766 3.61235 3.67515 3.68560 3.73482 3.89988 3.93711 3.94699 3.98475 4.00442 4.06046 4.16696 4.18056 4.30057 4.35133 4.36924 4.41315 4.44492 4.45166 4.51125 4.52137 4.58464 4.60983 4.69687 4.84400 4.84707 4.92402 4.96886 4.99049 5.00021 5.07871 5.08944 5.11264 5.21177 5.31812 5.32334 5.39197 5.47044 5.51052 5.53280 5.57386 5.64774 5.91608 6.04457 6.53647 6.74971 6.86656 7.25648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.557 6.557 2 C -0.079 4.079 3 Si 0.780 3.220 4 C -0.120 4.120 5 C -0.111 4.111 6 C -0.109 4.109 7 C -0.042 4.042 8 C -0.051 4.051 9 C -0.063 4.063 10 C -0.111 4.111 11 C 0.516 3.484 12 O -0.574 6.574 13 N -0.719 5.719 14 C 0.151 3.849 15 H 0.059 0.941 16 C -0.116 4.116 17 C -0.148 4.148 18 C 0.106 3.894 19 H 0.066 0.934 20 O -0.577 6.577 21 C -0.114 4.114 22 C -0.113 4.113 23 C -0.117 4.117 24 C -0.124 4.124 25 C -0.126 4.126 26 C -0.119 4.119 27 C -0.114 4.114 28 C -0.100 4.100 29 H 0.395 0.605 30 H 0.101 0.899 31 H -0.302 1.302 32 H -0.276 1.276 33 H 0.153 0.847 34 H 0.152 0.848 35 H 0.130 0.870 36 H 0.125 0.875 37 H 0.413 0.587 38 H 0.043 0.957 39 H 0.074 0.926 40 H 0.078 0.922 41 H 0.067 0.933 42 H 0.391 0.609 43 H 0.076 0.924 44 H 0.079 0.921 45 H 0.078 0.922 46 H 0.067 0.933 47 H 0.136 0.864 48 H 0.140 0.860 49 H 0.140 0.860 50 H 0.128 0.872 51 H 0.113 0.887 52 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.020 4.274 -2.368 5.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.365 6.365 2 C -0.188 4.188 3 Si 0.685 3.315 4 C -0.120 4.120 5 C -0.128 4.128 6 C -0.127 4.127 7 C -0.042 4.042 8 C -0.051 4.051 9 C -0.063 4.063 10 C -0.150 4.150 11 C 0.304 3.696 12 O -0.453 6.453 13 N -0.370 5.370 14 C 0.046 3.954 15 H 0.077 0.923 16 C -0.155 4.155 17 C -0.186 4.186 18 C 0.047 3.953 19 H 0.084 0.916 20 O -0.385 6.385 21 C -0.152 4.152 22 C -0.151 4.151 23 C -0.135 4.135 24 C -0.142 4.142 25 C -0.144 4.144 26 C -0.136 4.136 27 C -0.132 4.132 28 C -0.118 4.118 29 H 0.245 0.755 30 H 0.119 0.881 31 H -0.230 1.230 32 H -0.202 1.202 33 H 0.170 0.830 34 H 0.170 0.830 35 H 0.148 0.852 36 H 0.143 0.857 37 H 0.249 0.751 38 H 0.062 0.938 39 H 0.093 0.907 40 H 0.097 0.903 41 H 0.086 0.914 42 H 0.240 0.760 43 H 0.095 0.905 44 H 0.098 0.902 45 H 0.097 0.903 46 H 0.086 0.914 47 H 0.154 0.846 48 H 0.158 0.842 49 H 0.158 0.842 50 H 0.146 0.854 51 H 0.131 0.869 52 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 2.825 4.217 -1.271 5.233 hybrid contribution 0.344 -1.368 0.147 1.418 sum 3.169 2.849 -1.124 4.407 Atomic orbital electron populations 1.86466 1.17367 1.82234 1.50472 1.25280 0.85271 1.11310 0.96933 0.93678 0.78163 0.74822 0.84811 1.20449 0.99407 0.94798 0.97371 1.21150 0.97613 1.00201 0.93845 1.21386 1.00186 0.93092 0.97990 1.18869 0.97456 0.94155 0.93739 1.18729 0.92968 0.99142 0.94230 1.19430 0.92489 0.99031 0.95352 1.20965 1.01210 0.98989 0.93796 1.20898 0.77083 0.87982 0.83638 1.90715 1.52643 1.22516 1.79441 1.46003 1.52335 1.17779 1.20922 1.20862 0.97110 0.91330 0.86090 0.92295 1.21708 0.98138 0.97917 0.97712 1.22201 1.02742 0.98103 0.95543 1.21767 0.86499 0.91509 0.95513 0.91597 1.86464 1.21220 1.38187 1.92625 1.21545 0.96884 0.98396 0.98328 1.21616 1.02194 0.98136 0.93170 1.21212 1.00605 0.97432 0.94269 1.21474 0.93391 0.99269 1.00096 1.21369 0.96353 0.99105 0.97558 1.21357 0.99688 0.97859 0.94746 1.21256 0.97807 0.99650 0.94500 1.20972 0.99176 0.94530 0.97103 0.75503 0.88111 1.23009 1.20198 0.83042 0.83035 0.85201 0.85725 0.75051 0.93837 0.90702 0.90306 0.91402 0.75976 0.90541 0.90198 0.90294 0.91391 0.84588 0.84211 0.84246 0.85390 0.86933 0.86131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.69 12.76 -148.98 -1.90 -2.59 16 2 C -0.08 -0.01 2.82 71.24 0.20 0.19 16 3 Si 0.78 -2.34 29.78 68.60 2.04 -0.29 16 4 C -0.12 -0.12 5.40 -19.82 -0.11 -0.22 16 5 C -0.11 0.24 8.65 22.24 0.19 0.43 16 6 C -0.11 0.11 7.77 22.48 0.17 0.28 16 7 C -0.04 -0.16 4.88 -20.04 -0.10 -0.26 16 8 C -0.05 -0.27 5.40 -20.04 -0.11 -0.38 16 9 C -0.06 -0.24 4.38 -19.65 -0.09 -0.33 16 10 C -0.11 0.10 5.32 29.10 0.15 0.26 16 11 C 0.52 2.62 7.73 87.66 0.68 3.30 16 12 O -0.57 -8.40 15.71 -3.05 -0.05 -8.45 16 13 N -0.72 -0.35 5.08 -442.53 -2.25 -2.59 16 14 C 0.15 0.37 2.45 44.99 0.11 0.48 16 15 H 0.06 0.47 7.58 -2.39 -0.02 0.46 16 16 C -0.12 -0.24 5.35 30.59 0.16 -0.08 16 17 C -0.15 0.09 5.64 30.59 0.17 0.26 16 18 C 0.11 -0.16 3.77 30.60 0.12 -0.04 16 19 H 0.07 -0.21 8.14 -2.39 -0.02 -0.23 16 20 O -0.58 0.50 11.97 -148.98 -1.78 -1.28 16 21 C -0.11 0.08 5.66 30.59 0.17 0.26 16 22 C -0.11 0.05 5.25 30.59 0.16 0.21 16 23 C -0.12 -0.38 9.66 22.24 0.21 -0.17 16 24 C -0.12 -0.35 10.04 22.31 0.22 -0.12 16 25 C -0.13 -0.41 10.03 22.24 0.22 -0.19 16 26 C -0.12 -0.57 9.62 22.48 0.22 -0.36 16 27 C -0.11 -0.69 9.62 22.48 0.22 -0.47 16 28 C -0.10 -0.45 9.59 22.24 0.21 -0.23 16 29 H 0.40 -2.72 8.70 -74.06 -0.64 -3.37 16 30 H 0.10 0.20 7.96 -2.39 -0.02 0.18 16 31 H -0.30 -1.50 7.11 99.48 0.71 -0.79 16 32 H -0.28 -0.02 7.11 99.48 0.71 0.69 16 33 H 0.15 -1.12 4.86 -2.91 -0.01 -1.14 16 34 H 0.15 -0.88 7.09 -2.91 -0.02 -0.90 16 35 H 0.13 -0.82 8.04 -2.39 -0.02 -0.84 16 36 H 0.13 -0.59 4.69 -2.39 -0.01 -0.60 16 37 H 0.41 -2.20 8.60 -92.71 -0.80 -3.00 16 38 H 0.04 0.30 8.14 -2.39 -0.02 0.28 16 39 H 0.07 0.09 7.68 -2.39 -0.02 0.07 16 40 H 0.08 -0.21 8.14 -2.39 -0.02 -0.23 16 41 H 0.07 0.06 8.14 -2.39 -0.02 0.04 16 42 H 0.39 -2.96 9.08 -74.06 -0.67 -3.63 16 43 H 0.08 -0.06 8.14 -2.39 -0.02 -0.08 16 44 H 0.08 -0.10 8.14 -2.39 -0.02 -0.12 16 45 H 0.08 -0.02 7.68 -2.39 -0.02 -0.04 16 46 H 0.07 -0.04 8.14 -2.39 -0.02 -0.06 16 47 H 0.14 -0.07 8.06 -2.91 -0.02 -0.10 16 48 H 0.14 -0.20 8.06 -2.91 -0.02 -0.22 16 49 H 0.14 -0.12 8.06 -2.91 -0.02 -0.14 16 50 H 0.13 0.35 8.06 -2.91 -0.02 0.33 16 51 H 0.11 0.83 8.06 -2.91 -0.02 0.81 16 52 H 0.12 0.57 8.06 -2.92 -0.02 0.55 16 Total: 0.00 -22.61 415.87 -1.85 -24.46 By element: Atomic # 1 Polarization: -10.95 SS G_CDS: -1.12 Total: -12.06 kcal Atomic # 6 Polarization: -0.39 SS G_CDS: 3.21 Total: 2.82 kcal Atomic # 7 Polarization: -0.35 SS G_CDS: -2.25 Total: -2.59 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: -3.73 Total: -12.32 kcal Atomic # 14 Polarization: -2.34 SS G_CDS: 2.04 Total: -0.29 kcal Total: -22.61 -1.85 -24.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12892148_13158394.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.990 kcal (2) G-P(sol) polarization free energy of solvation -22.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds