Wall clock time and date at job start Sat Mar 6 2021 23:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86300 * 109.46714 * 2 1 4 4 C 1.50704 * 109.47319 * 119.99940 * 2 1 3 5 5 C 1.34703 * 125.66080 * 64.98517 * 4 2 1 6 6 C 1.40972 * 107.02506 * 179.80229 * 5 4 2 7 7 C 1.35931 * 106.74253 * 0.37809 * 6 5 4 8 8 C 1.47820 * 125.93138 * 179.88747 * 7 6 5 9 9 C 1.39797 * 119.99976 * 359.71368 * 8 7 6 10 10 C 1.37810 * 120.24767 * 179.97438 * 9 8 7 11 11 C 1.38775 * 120.24100 * 0.02562 * 10 9 8 12 12 O 1.35659 * 120.00106 * 179.72861 * 11 10 9 13 13 C 1.40242 * 119.99750 * 359.97438 * 11 10 9 14 14 C 1.47572 * 120.12160 * 179.97438 * 13 11 10 15 15 O 1.21582 * 120.00392 * 0.02562 * 14 13 11 16 16 N 1.34778 * 120.00098 * 180.02562 * 14 13 11 17 17 C 1.46491 * 120.00397 * 180.02562 * 16 14 13 18 18 H 1.09008 * 109.46846 * 324.99460 * 17 16 14 19 19 C 1.52999 * 109.47430 * 84.99545 * 17 16 14 20 20 C 1.53002 * 109.47307 * 180.02562 * 19 17 16 21 21 C 1.53004 * 109.47170 * 300.00464 * 20 19 17 22 22 H 1.08998 * 109.47214 * 179.97438 * 21 20 19 23 23 O 1.42904 * 109.46970 * 299.99869 * 21 20 19 24 24 C 1.52999 * 109.47384 * 59.99583 * 21 20 19 25 25 C 1.53002 * 109.47307 * 300.00333 * 24 21 20 26 26 C 1.39214 * 120.00080 * 179.68733 * 8 7 6 27 27 O 1.34337 * 125.66676 * 245.02667 * 4 2 1 28 28 H 0.96707 * 114.00043 * 299.99398 * 1 2 3 29 29 H 1.08996 * 109.47123 * 240.00126 * 2 1 3 30 30 H 1.48507 * 109.99797 * 178.68106 * 3 2 1 31 31 H 1.48500 * 110.00109 * 299.99880 * 3 2 1 32 32 H 1.07999 * 126.49249 * 0.02562 * 5 4 2 33 33 H 1.08005 * 126.63066 * 180.24087 * 6 5 4 34 34 H 1.08004 * 119.87905 * 359.97438 * 9 8 7 35 35 H 1.08006 * 119.88214 * 180.02562 * 10 9 8 36 36 H 0.96693 * 114.00159 * 89.99719 * 12 11 10 37 37 H 0.97004 * 119.99763 * 359.97438 * 16 14 13 38 38 H 1.08997 * 109.46920 * 300.00048 * 19 17 16 39 39 H 1.09000 * 109.46993 * 60.00712 * 19 17 16 40 40 H 1.08990 * 109.47274 * 180.02562 * 20 19 17 41 41 H 1.09008 * 109.47118 * 59.99824 * 20 19 17 42 42 H 0.96702 * 113.99598 * 300.00212 * 23 21 20 43 43 H 1.09002 * 109.47370 * 180.02562 * 24 21 20 44 44 H 1.09003 * 109.46749 * 60.00338 * 24 21 20 45 45 H 1.09008 * 109.47118 * 300.00176 * 25 24 21 46 46 H 1.09000 * 109.47102 * 179.97438 * 25 24 21 47 47 H 1.08001 * 120.12036 * 0.04975 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 1.7568 -2.0166 1.5094 6 6 2.3857 -2.2620 2.7470 7 6 2.9073 -1.0777 3.1629 8 6 3.6575 -0.8527 4.4165 9 6 3.8787 -1.9142 5.2988 10 6 4.5779 -1.7104 6.4687 11 6 5.0672 -0.4495 6.7799 12 8 5.7501 -0.2531 7.9355 13 6 4.8512 0.6227 5.9021 14 6 5.3697 1.9647 6.2305 15 8 5.9859 2.1423 7.2635 16 7 5.1603 2.9935 5.3855 17 6 5.6755 4.3256 5.7112 18 1 5.6216 4.4825 6.7885 19 6 7.1307 4.4360 5.2518 20 6 7.6690 5.8270 5.5926 21 6 6.8275 6.8881 4.8805 22 1 7.2107 7.8791 5.1236 23 8 6.8980 6.6829 3.4681 24 6 5.3722 6.7777 5.3398 25 6 4.8340 5.3866 4.9991 26 6 4.1442 0.4162 4.7183 27 8 2.6269 -0.1460 2.2317 28 1 -0.3933 0.4416 0.7651 29 1 1.7923 -0.5138 -0.8900 30 1 3.5345 1.7704 0.0321 31 1 1.5613 2.4679 -1.2085 32 1 1.2370 -2.7399 0.8987 33 1 2.4405 -3.2078 3.2657 34 1 3.5002 -2.8979 5.0627 35 1 4.7458 -2.5348 7.1459 36 1 6.7044 -0.3874 7.8561 37 1 4.6689 2.8517 4.5612 38 1 7.7302 3.6804 5.7595 39 1 7.1846 4.2791 4.1745 40 1 8.7055 5.9058 5.2650 41 1 7.6152 5.9836 6.6701 42 1 7.7932 6.7388 3.1067 43 1 4.7726 7.5333 4.8322 44 1 5.3185 6.9342 6.4172 45 1 4.8878 5.2301 3.9216 46 1 3.7974 5.3078 5.3267 47 1 3.9741 1.2378 4.0382 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12892148_13259648.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:54:14 Heat of formation + Delta-G solvation = -117.536304 kcal Electronic energy + Delta-G solvation = -32312.778226 eV Core-core repulsion = 27814.764041 eV Total energy + Delta-G solvation = -4498.014185 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 360.150 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.70108 -41.68480 -40.42624 -39.27332 -38.11222 -37.78308 -36.61548 -34.53771 -34.11576 -32.76663 -32.41101 -31.83391 -30.07738 -29.51422 -26.38804 -25.43424 -23.82668 -23.78060 -23.24829 -22.61429 -21.63714 -21.31412 -20.82159 -19.63920 -19.13341 -18.31237 -17.84781 -17.59164 -17.52029 -17.31461 -16.71056 -16.61421 -16.31628 -16.19464 -15.96919 -15.72997 -15.58042 -15.28751 -14.69951 -14.51148 -14.36216 -14.32888 -14.05971 -13.94688 -13.87525 -13.65065 -13.43350 -13.22629 -13.20974 -13.13246 -13.01294 -12.76521 -12.44456 -12.22553 -12.04748 -11.88659 -11.61342 -11.25263 -11.06098 -10.97383 -10.67142 -10.65004 -10.46522 -10.31389 -10.04901 -8.90947 -5.03203 -0.56287 -0.21162 0.77153 1.16389 1.43416 1.50095 1.76269 1.87356 1.90612 2.01706 2.62621 3.10509 3.24050 3.38076 3.40590 3.48837 3.63176 3.72410 3.73790 3.90470 3.97988 4.01617 4.05898 4.07966 4.20708 4.22077 4.31824 4.38782 4.39649 4.45313 4.50719 4.62871 4.65512 4.67272 4.78888 4.87606 4.89804 4.96941 5.01763 5.04355 5.12366 5.14078 5.15701 5.20484 5.25991 5.34545 5.44014 5.48527 5.50874 5.99175 6.42572 6.62081 6.71385 6.89738 7.11955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.542 6.542 2 C -0.027 4.027 3 Si 0.774 3.226 4 C -0.056 4.056 5 C -0.183 4.183 6 C -0.190 4.190 7 C 0.023 3.977 8 C -0.041 4.041 9 C -0.045 4.045 10 C -0.146 4.146 11 C 0.163 3.837 12 O -0.494 6.494 13 C -0.179 4.179 14 C 0.557 3.443 15 O -0.558 6.558 16 N -0.714 5.714 17 C 0.148 3.852 18 H 0.069 0.931 19 C -0.118 4.118 20 C -0.147 4.147 21 C 0.104 3.896 22 H 0.067 0.933 23 O -0.578 6.578 24 C -0.112 4.112 25 C -0.116 4.116 26 C -0.052 4.052 27 O -0.171 6.171 28 H 0.399 0.601 29 H 0.135 0.865 30 H -0.289 1.289 31 H -0.281 1.281 32 H 0.161 0.839 33 H 0.175 0.825 34 H 0.166 0.834 35 H 0.164 0.836 36 H 0.410 0.590 37 H 0.409 0.591 38 H 0.045 0.955 39 H 0.070 0.930 40 H 0.077 0.923 41 H 0.072 0.928 42 H 0.390 0.610 43 H 0.078 0.922 44 H 0.084 0.916 45 H 0.077 0.923 46 H 0.076 0.924 47 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.482 -0.194 -1.689 1.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.350 6.350 2 C -0.138 4.138 3 Si 0.678 3.322 4 C -0.106 4.106 5 C -0.202 4.202 6 C -0.208 4.208 7 C -0.026 4.026 8 C -0.041 4.041 9 C -0.063 4.063 10 C -0.165 4.165 11 C 0.117 3.883 12 O -0.308 6.308 13 C -0.183 4.183 14 C 0.345 3.655 15 O -0.437 6.437 16 N -0.366 5.366 17 C 0.044 3.956 18 H 0.088 0.912 19 C -0.157 4.157 20 C -0.185 4.185 21 C 0.045 3.955 22 H 0.085 0.915 23 O -0.386 6.386 24 C -0.150 4.150 25 C -0.154 4.154 26 C -0.070 4.070 27 O -0.069 6.069 28 H 0.250 0.750 29 H 0.152 0.848 30 H -0.216 1.216 31 H -0.207 1.207 32 H 0.179 0.821 33 H 0.192 0.808 34 H 0.183 0.817 35 H 0.182 0.818 36 H 0.270 0.730 37 H 0.247 0.753 38 H 0.064 0.936 39 H 0.089 0.911 40 H 0.095 0.905 41 H 0.091 0.909 42 H 0.239 0.761 43 H 0.097 0.903 44 H 0.103 0.897 45 H 0.096 0.904 46 H 0.094 0.906 47 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -0.584 0.604 -1.600 1.807 hybrid contribution 1.091 -0.928 -0.638 1.568 sum 0.508 -0.324 -2.239 2.318 Atomic orbital electron populations 1.86534 1.16042 1.82137 1.50314 1.24472 0.85349 1.11305 0.92647 0.93394 0.78186 0.75298 0.85310 1.23119 1.00909 0.94169 0.92383 1.21794 1.04022 0.95954 0.98438 1.22152 1.02173 0.99044 0.97470 1.20431 1.03574 0.87714 0.90898 1.17696 1.00400 0.94449 0.91600 1.21419 0.94263 0.99265 0.91352 1.21575 1.00377 0.96461 0.98050 1.18887 0.93610 0.91473 0.84366 1.84710 1.25122 1.92399 1.28528 1.20278 1.06498 0.94242 0.97284 1.18271 0.79315 0.84743 0.83184 1.90796 1.42063 1.84702 1.26178 1.45964 1.57461 1.08826 1.24300 1.21003 0.93651 0.81083 0.99845 0.91237 1.21732 0.95226 0.97179 1.01566 1.22201 1.00123 0.94556 1.01607 1.21817 0.95946 0.96926 0.80830 0.91510 1.86472 1.35171 1.95254 1.21723 1.21552 0.94755 0.96861 1.01855 1.21666 0.99029 0.93459 1.01270 1.21412 0.93821 0.97286 0.94509 1.83896 1.58114 1.38256 1.26656 0.75015 0.84767 1.21600 1.20747 0.82132 0.80807 0.81695 0.81824 0.72980 0.75346 0.93644 0.91107 0.90452 0.90904 0.76111 0.90336 0.89723 0.90448 0.90568 0.83402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 1.14 12.88 -148.98 -1.92 -0.78 16 2 C -0.03 0.06 2.98 71.24 0.21 0.27 16 3 Si 0.77 -1.97 32.11 68.60 2.20 0.24 16 4 C -0.06 -0.01 6.20 24.88 0.15 0.15 16 5 C -0.18 -0.02 10.78 22.13 0.24 0.22 16 6 C -0.19 0.20 10.26 22.40 0.23 0.43 16 7 C 0.02 0.01 7.03 24.27 0.17 0.18 16 8 C -0.04 0.02 5.87 -20.13 -0.12 -0.10 16 9 C -0.04 0.15 9.54 22.55 0.22 0.37 16 10 C -0.15 0.27 9.96 22.30 0.22 0.49 16 11 C 0.16 0.58 6.72 22.89 0.15 0.73 16 12 O -0.49 -2.82 11.55 -68.77 -0.79 -3.62 16 13 C -0.18 -0.70 5.88 -20.04 -0.12 -0.82 16 14 C 0.56 4.06 7.73 86.71 0.67 4.73 16 15 O -0.56 -8.05 14.81 17.01 0.25 -7.80 16 16 N -0.71 -1.31 5.03 -445.67 -2.24 -3.55 16 17 C 0.15 0.28 2.45 44.99 0.11 0.39 16 18 H 0.07 0.42 7.58 -2.38 -0.02 0.40 16 19 C -0.12 -0.20 5.35 30.59 0.16 -0.03 16 20 C -0.15 0.24 5.64 30.60 0.17 0.41 16 21 C 0.10 -0.26 3.77 30.60 0.12 -0.14 16 22 H 0.07 -0.28 8.14 -2.39 -0.02 -0.30 16 23 O -0.58 0.70 11.97 -148.98 -1.78 -1.08 16 24 C -0.11 0.26 5.66 30.59 0.17 0.43 16 25 C -0.12 0.19 5.25 30.60 0.16 0.35 16 26 C -0.05 -0.01 9.20 22.79 0.21 0.20 16 27 O -0.17 -0.16 8.80 -6.47 -0.06 -0.22 16 28 H 0.40 -3.88 8.70 -74.05 -0.64 -4.52 16 29 H 0.14 -0.37 7.96 -2.39 -0.02 -0.39 16 30 H -0.29 -1.07 7.11 99.48 0.71 -0.36 16 31 H -0.28 -0.90 7.11 99.48 0.71 -0.19 16 32 H 0.16 -0.31 8.06 -2.91 -0.02 -0.33 16 33 H 0.17 -1.06 7.25 -2.91 -0.02 -1.08 16 34 H 0.17 -1.48 6.96 -2.91 -0.02 -1.50 16 35 H 0.16 -0.98 8.06 -2.91 -0.02 -1.01 16 36 H 0.41 -0.56 9.06 -74.06 -0.67 -1.23 16 37 H 0.41 -1.21 6.63 -92.71 -0.61 -1.82 16 38 H 0.04 0.27 8.14 -2.39 -0.02 0.25 16 39 H 0.07 0.11 7.68 -2.39 -0.02 0.10 16 40 H 0.08 -0.26 8.14 -2.39 -0.02 -0.28 16 41 H 0.07 -0.07 8.14 -2.38 -0.02 -0.08 16 42 H 0.39 -2.96 9.08 -74.06 -0.67 -3.63 16 43 H 0.08 -0.19 8.14 -2.39 -0.02 -0.21 16 44 H 0.08 -0.29 8.14 -2.39 -0.02 -0.31 16 45 H 0.08 -0.08 7.68 -2.38 -0.02 -0.10 16 46 H 0.08 -0.21 8.14 -2.39 -0.02 -0.23 16 47 H 0.15 -0.52 6.24 -2.91 -0.02 -0.54 16 Total: 0.00 -23.21 389.55 -2.71 -25.92 By element: Atomic # 1 Polarization: -15.84 SS G_CDS: -1.50 Total: -17.35 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: 3.14 Total: 8.24 kcal Atomic # 7 Polarization: -1.31 SS G_CDS: -2.24 Total: -3.55 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: -4.30 Total: -13.49 kcal Atomic # 14 Polarization: -1.97 SS G_CDS: 2.20 Total: 0.24 kcal Total: -23.21 -2.71 -25.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12892148_13259648.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.620 kcal (2) G-P(sol) polarization free energy of solvation -23.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds