Wall clock time and date at job start Sat Mar 6 2021 23:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42892 * 1 3 3 Si 1.86302 * 109.47330 * 2 1 4 4 C 1.50709 * 109.46950 * 119.99825 * 2 1 3 5 5 C 1.34187 * 126.53673 * 255.02108 * 4 2 1 6 6 N 1.36869 * 109.96748 * 179.97438 * 5 4 2 7 7 C 1.37405 * 109.97590 * 0.02562 * 6 5 4 8 8 C 1.39328 * 133.24937 * 179.97438 * 7 6 5 9 9 C 1.36344 * 120.23836 * 180.02562 * 8 7 6 10 10 C 1.40174 * 120.66883 * 0.02562 * 9 8 7 11 11 C 1.47653 * 119.97219 * 179.97438 * 10 9 8 12 12 O 1.21576 * 119.99603 * 180.02562 * 11 10 9 13 13 N 1.34779 * 120.00318 * 359.97438 * 11 10 9 14 14 C 1.46495 * 119.99829 * 180.02562 * 13 11 10 15 15 H 1.08997 * 109.47543 * 325.00343 * 14 13 11 16 16 C 1.52999 * 109.47207 * 85.00299 * 14 13 11 17 17 C 1.53001 * 109.47385 * 179.97438 * 16 14 13 18 18 C 1.53001 * 109.47313 * 300.00387 * 17 16 14 19 19 H 1.08998 * 109.46923 * 179.97438 * 18 17 16 20 20 O 1.42899 * 109.46980 * 299.99831 * 18 17 16 21 21 C 1.52998 * 109.46931 * 59.99762 * 18 17 16 22 22 C 1.53001 * 109.46903 * 205.00327 * 14 13 11 23 23 C 1.39182 * 120.05206 * 359.95828 * 10 9 8 24 24 C 1.39232 * 119.39274 * 0.04621 * 23 10 9 25 25 H 0.96703 * 114.00117 * 60.00270 * 1 2 3 26 26 H 1.09001 * 109.47652 * 239.99670 * 2 1 3 27 27 H 1.48506 * 109.99427 * 298.68008 * 3 2 1 28 28 H 1.48490 * 110.00030 * 59.99545 * 3 2 1 29 29 H 1.08007 * 125.01842 * 0.02562 * 5 4 2 30 30 H 0.96993 * 125.01185 * 180.26933 * 6 5 4 31 31 H 1.08007 * 119.87954 * 359.97438 * 8 7 6 32 32 H 1.08001 * 119.66848 * 180.02562 * 9 8 7 33 33 H 0.96995 * 119.99752 * 0.02562 * 13 11 10 34 34 H 1.08996 * 109.47254 * 299.99755 * 16 14 13 35 35 H 1.09010 * 109.47008 * 59.99654 * 16 14 13 36 36 H 1.08999 * 109.47251 * 179.97438 * 17 16 14 37 37 H 1.09010 * 109.46831 * 60.00156 * 17 16 14 38 38 H 0.96707 * 113.99976 * 299.99712 * 20 18 17 39 39 H 1.09004 * 109.46924 * 180.02562 * 21 18 17 40 40 H 1.09002 * 109.47601 * 60.00325 * 21 18 17 41 41 H 1.09001 * 109.47027 * 299.99572 * 22 14 13 42 42 H 1.08999 * 109.47295 * 60.00088 * 22 14 13 43 43 H 1.07999 * 120.30682 * 180.02562 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9312 -0.7104 1.2306 5 6 2.4602 -0.1386 2.3232 6 7 2.8018 -1.1003 3.2351 7 6 2.4950 -2.3454 2.7416 8 6 2.6341 -3.6349 3.2505 9 6 2.2313 -4.7103 2.5155 10 6 1.6737 -4.5369 1.2412 11 6 1.2432 -5.7125 0.4583 12 8 0.7599 -5.5627 -0.6472 13 7 1.3870 -6.9516 0.9686 14 6 0.9604 -8.1178 0.1915 15 1 0.0723 -7.8639 -0.3872 16 6 2.0847 -8.5373 -0.7576 17 6 1.6395 -9.7558 -1.5688 18 6 1.3165 -10.9107 -0.6187 19 1 0.9989 -11.7786 -1.1967 20 8 2.4810 -11.2433 0.1399 21 6 0.1922 -10.4912 0.3303 22 6 0.6372 -9.2730 1.1413 23 6 1.5251 -3.2576 0.7135 24 6 1.9357 -2.1578 1.4620 25 1 -0.3933 0.4417 -0.7651 26 1 1.7924 -0.5139 -0.8899 27 1 1.5878 2.4585 -1.2243 28 1 1.5614 2.4679 1.2084 29 1 2.5957 0.9239 2.4627 30 1 3.1985 -0.9280 4.1033 31 1 3.0633 -3.7832 4.2305 32 1 2.3431 -5.7058 2.9191 33 1 1.7729 -7.0711 1.8504 34 1 2.3150 -7.7144 -1.4342 35 1 2.9729 -8.7913 -0.1789 36 1 2.4403 -10.0543 -2.2453 37 1 0.7512 -9.5021 -2.1475 38 1 3.2356 -11.5190 -0.3984 39 1 -0.0376 -11.3139 1.0075 40 1 -0.6961 -10.2376 -0.2483 41 1 1.5253 -9.5271 1.7198 42 1 -0.1638 -8.9742 1.8174 43 1 1.0956 -3.1193 -0.2677 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12892148_13287722.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:54:18 Heat of formation + Delta-G solvation = -65.023822 kcal Electronic energy + Delta-G solvation = -26201.765929 eV Core-core repulsion = 22406.193470 eV Total energy + Delta-G solvation = -3795.572459 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.46886 -41.20755 -39.74724 -37.99184 -37.53504 -36.67129 -34.33903 -33.39268 -31.83672 -31.16594 -30.66264 -29.29053 -26.45950 -25.07124 -23.82335 -23.46307 -22.98869 -21.51550 -20.97245 -20.46873 -19.08191 -18.54004 -18.48621 -17.79794 -17.55458 -17.04547 -16.67772 -16.13457 -15.90034 -15.67038 -15.58872 -15.27394 -15.04131 -14.86925 -14.80974 -14.41333 -14.16631 -14.06473 -13.78171 -13.57379 -13.44701 -13.21971 -13.03032 -12.79137 -12.60243 -12.44986 -12.15976 -12.03987 -11.83209 -11.60892 -11.26407 -11.11610 -10.80900 -10.67538 -10.38234 -10.14063 -9.34496 -8.82990 -4.88610 -0.16954 0.18850 1.33132 1.47268 1.63791 1.82707 1.96753 2.06792 2.10866 2.86470 3.40232 3.51839 3.57686 3.66514 3.73087 3.76439 3.82200 3.98182 4.02327 4.07150 4.12848 4.22490 4.25351 4.39185 4.40380 4.44462 4.50954 4.53200 4.58950 4.65615 4.77421 4.90103 4.97348 4.99175 5.04874 5.14091 5.14807 5.25672 5.26457 5.32858 5.35598 5.45234 5.53224 5.55620 5.96526 6.50161 6.56927 6.62733 6.91756 7.17173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.564 6.564 2 C -0.066 4.066 3 Si 0.787 3.213 4 C -0.182 4.182 5 C 0.080 3.920 6 N -0.571 5.571 7 C 0.111 3.889 8 C -0.124 4.124 9 C -0.067 4.067 10 C -0.180 4.180 11 C 0.561 3.439 12 O -0.588 6.588 13 N -0.709 5.709 14 C 0.147 3.853 15 H 0.065 0.935 16 C -0.119 4.119 17 C -0.147 4.147 18 C 0.105 3.895 19 H 0.067 0.933 20 O -0.577 6.577 21 C -0.113 4.113 22 C -0.114 4.114 23 C -0.020 4.020 24 C -0.129 4.129 25 H 0.390 0.610 26 H 0.069 0.931 27 H -0.293 1.293 28 H -0.277 1.277 29 H 0.206 0.794 30 H 0.439 0.561 31 H 0.163 0.837 32 H 0.159 0.841 33 H 0.413 0.587 34 H 0.041 0.959 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.391 0.609 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.073 0.927 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.757 -0.053 4.529 7.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.374 6.374 2 C -0.174 4.174 3 Si 0.689 3.311 4 C -0.189 4.189 5 C -0.048 4.048 6 N -0.175 5.175 7 C 0.002 3.998 8 C -0.144 4.144 9 C -0.087 4.087 10 C -0.184 4.184 11 C 0.350 3.650 12 O -0.469 6.469 13 N -0.360 5.360 14 C 0.042 3.958 15 H 0.083 0.917 16 C -0.158 4.158 17 C -0.185 4.185 18 C 0.047 3.953 19 H 0.085 0.915 20 O -0.385 6.385 21 C -0.151 4.151 22 C -0.152 4.152 23 C -0.040 4.040 24 C -0.134 4.134 25 H 0.239 0.761 26 H 0.087 0.913 27 H -0.220 1.220 28 H -0.203 1.203 29 H 0.223 0.777 30 H 0.281 0.719 31 H 0.181 0.819 32 H 0.177 0.823 33 H 0.251 0.749 34 H 0.060 0.940 35 H 0.093 0.907 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.240 0.760 39 H 0.097 0.903 40 H 0.101 0.899 41 H 0.098 0.902 42 H 0.092 0.908 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 4.968 0.747 4.938 7.044 hybrid contribution -0.808 -0.199 -0.858 1.195 sum 4.160 0.548 4.080 5.852 Atomic orbital electron populations 1.86585 1.19458 1.80825 1.50485 1.24575 0.83310 1.12527 0.96938 0.94099 0.89613 0.70121 0.77271 1.19823 1.09901 0.91043 0.98122 1.22091 0.99051 0.95577 0.88053 1.41723 1.54062 1.03149 1.18516 1.18637 0.99797 0.87868 0.93537 1.20060 1.04364 0.87858 1.02144 1.20883 0.95942 1.00188 0.91690 1.19596 1.09036 0.92235 0.97520 1.18478 0.77240 0.83996 0.85241 1.90744 1.47004 1.86834 1.22343 1.45859 1.63811 1.04768 1.21579 1.21003 0.97102 0.84676 0.93001 0.91702 1.21739 0.98788 0.97249 0.97981 1.22209 1.02570 0.95501 0.98269 1.21785 0.86311 0.95465 0.91777 0.91461 1.86465 1.24081 1.89411 1.38586 1.21550 0.97100 0.97746 0.98715 1.21638 1.02628 0.93295 0.97636 1.20572 0.94365 0.90594 0.98431 1.19203 1.05196 0.93451 0.95538 0.76082 0.91285 1.21975 1.20323 0.77720 0.71924 0.81943 0.82316 0.74894 0.94007 0.90661 0.90320 0.91160 0.76009 0.90275 0.89917 0.90178 0.90788 0.87260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -4.20 12.86 -148.98 -1.92 -6.12 16 2 C -0.07 -0.24 3.05 71.24 0.22 -0.02 16 3 Si 0.79 -1.81 30.80 68.60 2.11 0.31 16 4 C -0.18 -0.94 5.61 -18.61 -0.10 -1.04 16 5 C 0.08 -0.11 10.43 82.98 0.87 0.75 16 6 N -0.57 1.85 6.05 -187.48 -1.13 0.71 16 7 C 0.11 0.28 7.27 39.18 0.28 0.56 16 8 C -0.12 0.16 10.00 22.09 0.22 0.38 16 9 C -0.07 -0.03 9.46 22.30 0.21 0.18 16 10 C -0.18 -1.46 5.87 -20.09 -0.12 -1.58 16 11 C 0.56 6.09 7.73 86.73 0.67 6.76 16 12 O -0.59 -11.50 15.99 -3.96 -0.06 -11.56 16 13 N -0.71 -2.48 5.03 -445.60 -2.24 -4.72 16 14 C 0.15 0.53 2.45 44.99 0.11 0.65 16 15 H 0.06 0.55 7.58 -2.39 -0.02 0.53 16 16 C -0.12 -0.40 5.35 30.59 0.16 -0.23 16 17 C -0.15 0.04 5.64 30.60 0.17 0.22 16 18 C 0.11 -0.18 3.77 30.59 0.12 -0.06 16 19 H 0.07 -0.24 8.14 -2.39 -0.02 -0.25 16 20 O -0.58 0.51 11.97 -148.98 -1.78 -1.27 16 21 C -0.11 0.14 5.66 30.58 0.17 0.32 16 22 C -0.11 0.06 5.24 30.58 0.16 0.22 16 23 C -0.02 -0.23 9.64 22.74 0.22 -0.01 16 24 C -0.13 -1.09 6.34 -20.21 -0.13 -1.22 16 25 H 0.39 -0.23 8.74 -74.06 -0.65 -0.88 16 26 H 0.07 0.22 7.96 -2.39 -0.02 0.20 16 27 H -0.29 -0.87 7.11 99.48 0.71 -0.17 16 28 H -0.28 -0.38 7.04 99.48 0.70 0.32 16 29 H 0.21 -1.66 6.30 -2.91 -0.02 -1.68 16 30 H 0.44 -4.71 8.96 -92.71 -0.83 -5.54 16 31 H 0.16 -1.36 8.06 -2.91 -0.02 -1.39 16 32 H 0.16 -1.08 6.36 -2.91 -0.02 -1.10 16 33 H 0.41 -1.18 6.60 -92.71 -0.61 -1.79 16 34 H 0.04 0.36 8.14 -2.39 -0.02 0.34 16 35 H 0.07 0.18 7.68 -2.38 -0.02 0.16 16 36 H 0.08 -0.18 8.14 -2.39 -0.02 -0.20 16 37 H 0.07 0.05 8.14 -2.38 -0.02 0.04 16 38 H 0.39 -2.92 9.08 -74.05 -0.67 -3.60 16 39 H 0.08 -0.13 8.14 -2.39 -0.02 -0.15 16 40 H 0.08 -0.17 8.14 -2.39 -0.02 -0.19 16 41 H 0.08 -0.04 7.68 -2.39 -0.02 -0.06 16 42 H 0.07 -0.11 8.14 -2.39 -0.02 -0.13 16 43 H 0.11 1.70 7.64 -2.91 -0.02 1.68 16 Total: 0.00 -27.20 350.02 -3.44 -30.64 By element: Atomic # 1 Polarization: -12.20 SS G_CDS: -1.65 Total: -13.85 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: 3.23 Total: 5.87 kcal Atomic # 7 Polarization: -0.63 SS G_CDS: -3.37 Total: -4.01 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: -3.76 Total: -18.95 kcal Atomic # 14 Polarization: -1.81 SS G_CDS: 2.11 Total: 0.31 kcal Total: -27.20 -3.44 -30.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12892148_13287722.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.387 kcal (2) G-P(sol) polarization free energy of solvation -27.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds