Wall clock time and date at job start Sat Mar 6 2021 23:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86305 * 109.46988 * 2 1 4 4 C 1.50699 * 109.47005 * 240.00060 * 2 1 3 5 5 C 1.38585 * 120.32389 * 299.99752 * 4 2 1 6 6 C 1.38628 * 118.49006 * 179.72562 * 5 4 2 7 7 C 1.39275 * 119.06101 * 0.02562 * 6 5 4 8 8 C 1.48163 * 119.72455 * 180.02562 * 7 6 5 9 9 O 1.21513 * 119.99782 * 359.97438 * 8 7 6 10 10 N 1.34775 * 120.00058 * 179.97438 * 8 7 6 11 11 C 1.46504 * 119.99861 * 179.97438 * 10 8 7 12 12 H 1.09001 * 109.47188 * 325.00139 * 11 10 8 13 13 C 1.52994 * 109.46970 * 85.00609 * 11 10 8 14 14 C 1.52998 * 109.47251 * 180.02562 * 13 11 10 15 15 C 1.53006 * 109.46723 * 299.99592 * 14 13 11 16 16 H 1.08997 * 109.47270 * 180.02562 * 15 14 13 17 17 O 1.42903 * 109.46844 * 299.99938 * 15 14 13 18 18 C 1.52996 * 109.47136 * 59.99892 * 15 14 13 19 19 C 1.52999 * 109.46830 * 205.00329 * 11 10 8 20 20 N 1.32747 * 120.55344 * 359.97438 * 7 6 5 21 21 C 1.31502 * 121.64467 * 0.02562 * 20 7 6 22 22 H 0.96700 * 113.99711 * 59.99928 * 1 2 3 23 23 H 1.09001 * 109.47051 * 119.99381 * 2 1 3 24 24 H 1.48493 * 110.00025 * 60.00256 * 3 2 1 25 25 H 1.48502 * 109.99867 * 181.31998 * 3 2 1 26 26 H 1.07998 * 120.75237 * 359.74957 * 5 4 2 27 27 H 1.07997 * 120.47286 * 180.02562 * 6 5 4 28 28 H 0.97000 * 120.00112 * 0.02562 * 10 8 7 29 29 H 1.09009 * 109.46900 * 299.99506 * 13 11 10 30 30 H 1.09001 * 109.47549 * 59.99751 * 13 11 10 31 31 H 1.08996 * 109.47484 * 180.02562 * 14 13 11 32 32 H 1.09001 * 109.47783 * 59.99153 * 14 13 11 33 33 H 0.96699 * 114.00479 * 300.00071 * 17 15 14 34 34 H 1.09003 * 109.47103 * 179.97438 * 18 15 14 35 35 H 1.09001 * 109.47185 * 60.00091 * 18 15 14 36 36 H 1.09001 * 109.47080 * 299.99876 * 19 11 10 37 37 H 1.08996 * 109.47689 * 60.00022 * 19 11 10 38 38 H 1.07997 * 119.55004 * 180.02562 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 1.6006 -2.0371 -1.4564 6 6 2.0786 -2.6516 -2.6035 7 6 2.8706 -1.9185 -3.4838 8 6 3.3888 -2.5605 -4.7145 9 8 3.1227 -3.7221 -4.9520 10 7 4.1553 -1.8561 -5.5705 11 6 4.6681 -2.4911 -6.7871 12 1 4.8954 -3.5374 -6.5827 13 6 3.6126 -2.4047 -7.8912 14 6 4.1479 -3.0684 -9.1616 15 6 5.4203 -2.3497 -9.6150 16 1 5.8015 -2.8222 -10.5203 17 8 5.1227 -0.9780 -9.8833 18 6 6.4759 -2.4361 -8.5109 19 6 5.9403 -1.7720 -7.2402 20 7 3.1642 -0.6490 -3.2300 21 6 2.7242 -0.0417 -2.1498 22 1 -0.3933 0.4417 -0.7651 23 1 1.7923 -0.5137 0.8900 24 1 1.5615 2.4679 1.2085 25 1 3.5346 1.7703 -0.0321 26 1 0.9843 -2.5798 -0.7550 27 1 1.8402 -3.6842 -2.8115 28 1 4.3680 -0.9289 -5.3807 29 1 2.7063 -2.9170 -7.5683 30 1 3.3854 -1.3584 -8.0956 31 1 3.3962 -3.0064 -9.9484 32 1 4.3749 -4.1147 -8.9570 33 1 4.4594 -0.8474 -10.5747 34 1 7.3825 -1.9245 -8.8341 35 1 6.7028 -3.4824 -8.3062 36 1 5.7130 -0.7257 -7.4446 37 1 6.6923 -1.8335 -6.4536 38 1 2.9835 0.9923 -1.9772 There are 51 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 51 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12892148_13287726.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:54:21 Heat of formation + Delta-G solvation = -87.318506 kcal Electronic energy + Delta-G solvation = -21646.311316 eV Core-core repulsion = 18261.761987 eV Total energy + Delta-G solvation = -3384.549329 eV No. of doubly occupied orbitals = 51 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.95696 -40.80078 -39.57316 -37.87925 -36.72727 -34.54140 -33.60373 -32.98978 -31.83801 -29.91455 -27.62950 -25.04720 -24.29419 -23.80189 -22.95726 -21.70517 -20.97568 -19.26100 -18.61492 -17.89960 -17.69303 -17.04878 -16.76261 -16.62984 -16.25928 -16.16064 -15.95099 -15.58771 -15.19495 -14.61396 -14.39195 -14.35676 -14.30869 -14.02194 -13.57434 -13.49645 -13.22325 -13.05676 -12.55824 -12.46882 -12.17243 -12.04724 -11.63791 -11.51132 -11.24401 -11.08991 -10.77163 -10.63434 -10.60774 -10.33167 -10.07676 -5.00493 -0.62259 0.05744 1.24359 1.51242 1.63417 1.92263 1.97117 2.64287 2.91591 3.40422 3.41342 3.49653 3.58852 3.71156 3.73384 3.79283 3.93308 3.98671 4.06836 4.11156 4.21377 4.38441 4.40227 4.42521 4.50137 4.55817 4.63909 4.83175 4.90633 4.95831 4.97640 5.04038 5.13295 5.14725 5.24586 5.32150 5.35989 5.46266 6.25815 6.59142 6.70718 6.92310 7.01429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.550 6.550 2 C -0.069 4.069 3 Si 0.774 3.226 4 C -0.142 4.142 5 C -0.053 4.053 6 C -0.115 4.115 7 C 0.062 3.938 8 C 0.568 3.432 9 O -0.567 6.567 10 N -0.696 5.696 11 C 0.144 3.856 12 H 0.073 0.927 13 C -0.119 4.119 14 C -0.146 4.146 15 C 0.104 3.896 16 H 0.069 0.931 17 O -0.579 6.579 18 C -0.112 4.112 19 C -0.115 4.115 20 N -0.460 5.460 21 C 0.101 3.899 22 H 0.397 0.603 23 H 0.120 0.880 24 H -0.295 1.295 25 H -0.278 1.278 26 H 0.161 0.839 27 H 0.148 0.852 28 H 0.418 0.582 29 H 0.046 0.954 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.391 0.609 34 H 0.077 0.923 35 H 0.086 0.914 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.427 3.402 -1.942 3.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.358 6.358 2 C -0.179 4.179 3 Si 0.679 3.321 4 C -0.144 4.144 5 C -0.079 4.079 6 C -0.136 4.136 7 C -0.075 4.075 8 C 0.354 3.646 9 O -0.445 6.445 10 N -0.346 5.346 11 C 0.040 3.960 12 H 0.091 0.909 13 C -0.157 4.157 14 C -0.184 4.184 15 C 0.045 3.955 16 H 0.086 0.914 17 O -0.387 6.387 18 C -0.150 4.150 19 C -0.153 4.153 20 N -0.171 5.171 21 C -0.059 4.059 22 H 0.248 0.752 23 H 0.137 0.863 24 H -0.223 1.223 25 H -0.205 1.205 26 H 0.179 0.821 27 H 0.166 0.834 28 H 0.255 0.745 29 H 0.065 0.935 30 H 0.090 0.910 31 H 0.098 0.902 32 H 0.092 0.908 33 H 0.240 0.760 34 H 0.096 0.904 35 H 0.104 0.896 36 H 0.094 0.906 37 H 0.090 0.910 38 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 0.941 3.374 -1.342 3.751 hybrid contribution -0.843 -0.984 0.557 1.411 sum 0.097 2.390 -0.784 2.517 Atomic orbital electron populations 1.86507 1.16639 1.82103 1.50587 1.25161 0.85637 1.10952 0.96176 0.93748 0.78181 0.74654 0.85559 1.21781 0.98437 0.95765 0.98439 1.21723 0.96223 0.94023 0.95888 1.22277 0.95523 1.02059 0.93756 1.21086 0.99036 0.91371 0.95999 1.18121 0.78476 0.85314 0.82714 1.90777 1.59778 1.17628 1.76360 1.45916 1.50284 1.16500 1.21932 1.21106 0.94133 0.97532 0.83183 0.90883 1.21737 0.97530 1.01707 0.94755 1.22205 0.98463 1.00355 0.97421 1.21818 0.94017 0.82168 0.97507 0.91350 1.86475 1.64694 1.25458 1.62080 1.21564 0.98036 1.01966 0.93450 1.21647 0.95224 1.00551 0.97858 1.67508 1.20503 1.08782 1.20351 1.23036 0.93660 1.00590 0.88598 0.75224 0.86295 1.22274 1.20481 0.82133 0.83380 0.74490 0.93523 0.90989 0.90226 0.90754 0.76017 0.90424 0.89570 0.90597 0.90971 0.79662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 2.07 12.78 -148.98 -1.90 0.16 16 2 C -0.07 0.32 2.83 71.24 0.20 0.52 16 3 Si 0.77 -4.57 29.82 68.60 2.05 -2.53 16 4 C -0.14 0.38 5.40 -19.69 -0.11 0.27 16 5 C -0.05 0.05 9.76 22.45 0.22 0.27 16 6 C -0.12 -0.36 9.63 22.61 0.22 -0.14 16 7 C 0.06 0.33 6.75 41.89 0.28 0.61 16 8 C 0.57 4.74 7.78 86.88 0.68 5.42 16 9 O -0.57 -8.18 15.99 -3.76 -0.06 -8.24 16 10 N -0.70 -2.67 5.07 -445.11 -2.26 -4.92 16 11 C 0.14 0.39 2.45 44.99 0.11 0.50 16 12 H 0.07 0.44 7.58 -2.39 -0.02 0.42 16 13 C -0.12 -0.25 5.35 30.59 0.16 -0.09 16 14 C -0.15 0.24 5.64 30.60 0.17 0.41 16 15 C 0.10 -0.24 3.77 30.59 0.12 -0.12 16 16 H 0.07 -0.29 8.14 -2.39 -0.02 -0.31 16 17 O -0.58 0.51 11.97 -148.98 -1.78 -1.27 16 18 C -0.11 0.20 5.67 30.61 0.17 0.37 16 19 C -0.11 0.04 5.25 30.61 0.16 0.20 16 20 N -0.46 -1.16 9.54 -184.91 -1.76 -2.92 16 21 C 0.10 -0.20 9.84 84.83 0.83 0.64 16 22 H 0.40 -4.58 8.70 -74.06 -0.64 -5.22 16 23 H 0.12 -0.50 7.96 -2.39 -0.02 -0.51 16 24 H -0.30 -0.59 7.11 99.48 0.71 0.11 16 25 H -0.28 0.41 7.11 99.48 0.71 1.12 16 26 H 0.16 -0.63 8.06 -2.91 -0.02 -0.65 16 27 H 0.15 0.49 7.64 -2.91 -0.02 0.47 16 28 H 0.42 0.43 7.93 -92.71 -0.74 -0.30 16 29 H 0.05 0.29 8.14 -2.38 -0.02 0.27 16 30 H 0.07 0.16 7.68 -2.39 -0.02 0.14 16 31 H 0.08 -0.29 8.14 -2.39 -0.02 -0.31 16 32 H 0.07 -0.09 8.14 -2.39 -0.02 -0.11 16 33 H 0.39 -2.97 9.08 -74.06 -0.67 -3.64 16 34 H 0.08 -0.13 8.14 -2.39 -0.02 -0.15 16 35 H 0.09 -0.28 8.14 -2.39 -0.02 -0.30 16 36 H 0.08 0.06 7.68 -2.39 -0.02 0.04 16 37 H 0.07 -0.07 8.14 -2.39 -0.02 -0.09 16 38 H 0.19 -1.38 4.89 -2.91 -0.01 -1.39 16 Total: 0.00 -17.86 313.70 -3.41 -21.27 By element: Atomic # 1 Polarization: -9.51 SS G_CDS: -0.91 Total: -10.42 kcal Atomic # 6 Polarization: 5.65 SS G_CDS: 3.22 Total: 8.87 kcal Atomic # 7 Polarization: -3.83 SS G_CDS: -4.02 Total: -7.85 kcal Atomic # 8 Polarization: -5.60 SS G_CDS: -3.75 Total: -9.35 kcal Atomic # 14 Polarization: -4.57 SS G_CDS: 2.05 Total: -2.53 kcal Total: -17.86 -3.41 -21.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12892148_13287726.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.051 kcal (2) G-P(sol) polarization free energy of solvation -17.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds