Wall clock time and date at job start Sat Mar 6 2021 23:54:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34663 * 124.85054 * 2 1 4 4 C 1.36767 * 108.39657 * 180.15206 * 3 2 1 5 5 C 1.47263 * 126.94308 * 179.83584 * 4 3 2 6 6 O 1.21623 * 120.00126 * 179.68585 * 5 4 3 7 7 N 1.34777 * 119.99630 * 359.68272 * 5 4 3 8 8 C 1.46499 * 119.99665 * 179.72408 * 7 5 4 9 9 H 1.08999 * 109.47480 * 35.27807 * 8 7 5 10 10 C 1.52999 * 109.47493 * 155.28120 * 8 7 5 11 11 C 1.53003 * 109.47272 * 59.99227 * 10 8 7 12 12 C 1.53001 * 109.46331 * 60.00742 * 11 10 8 13 13 H 1.09005 * 109.47539 * 60.00121 * 12 11 10 14 14 O 1.42903 * 109.46701 * 179.97438 * 12 11 10 15 15 C 1.52996 * 109.47349 * 299.99577 * 12 11 10 16 16 C 1.52999 * 109.47136 * 275.27771 * 8 7 5 17 17 C 1.46693 * 106.11423 * 359.57576 * 4 3 2 18 18 C 1.34478 * 106.33310 * 0.26240 * 17 4 3 19 19 C 1.50704 * 125.57165 * 179.97438 * 18 17 4 20 20 O 1.42901 * 109.46882 * 210.02367 * 19 18 17 21 21 Si 1.86295 * 109.46832 * 330.02372 * 19 18 17 22 22 H 1.09000 * 109.47084 * 270.33439 * 1 2 3 23 23 H 1.08995 * 109.47271 * 30.33805 * 1 2 3 24 24 H 1.09001 * 109.47001 * 150.33715 * 1 2 3 25 25 H 1.08001 * 125.80273 * 0.02562 * 3 2 1 26 26 H 0.97001 * 120.00485 * 0.02562 * 7 5 4 27 27 H 1.08991 * 109.47925 * 180.02562 * 10 8 7 28 28 H 1.09009 * 109.46506 * 300.00089 * 10 8 7 29 29 H 1.08997 * 109.47156 * 180.02562 * 11 10 8 30 30 H 1.08991 * 109.47365 * 300.01225 * 11 10 8 31 31 H 0.96700 * 113.99840 * 179.97438 * 14 12 11 32 32 H 1.08997 * 109.47425 * 180.02562 * 15 12 11 33 33 H 1.08996 * 109.47216 * 300.00101 * 15 12 11 34 34 H 1.08999 * 109.47488 * 60.00276 * 16 8 7 35 35 H 1.09005 * 109.47368 * 180.02562 * 16 8 7 36 36 H 1.07995 * 126.82871 * 180.30028 * 17 4 3 37 37 H 1.09000 * 109.47149 * 90.02476 * 19 18 17 38 38 H 0.96700 * 114.00189 * 59.99757 * 20 19 18 39 39 H 1.48503 * 109.99567 * 180.02562 * 21 19 18 40 40 H 1.48500 * 110.00041 * 301.31527 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2345 1.1051 0.0000 4 6 3.5462 0.7177 -0.0034 5 6 4.7284 1.5958 -0.0081 6 8 5.8446 1.1129 -0.0050 7 7 4.5733 2.9346 -0.0157 8 6 5.7493 3.8082 -0.0142 9 1 6.5443 3.3484 -0.6013 10 6 5.3806 5.1611 -0.6262 11 6 4.2646 5.8065 0.1979 12 6 4.7459 6.0114 1.6357 13 1 5.6210 6.6615 1.6369 14 8 3.7039 6.6148 2.4053 15 6 5.1147 4.6586 2.2478 16 6 6.2305 4.0131 1.4236 17 6 3.5375 -0.7492 0.0048 18 6 2.2448 -1.1197 0.0065 19 6 1.7398 -2.5396 0.0137 20 8 0.4812 -2.6010 -0.6603 21 14 2.9654 -3.6389 -0.8579 22 1 -0.3633 0.0060 1.0276 23 1 -0.3633 0.8869 -0.5190 24 1 -0.3633 -0.8930 -0.5086 25 1 1.8767 2.1241 0.0004 26 1 3.6830 3.3198 -0.0178 27 1 6.2556 5.8109 -0.6255 28 1 5.0377 5.0150 -1.6506 29 1 4.0017 6.7701 -0.2384 30 1 3.3897 5.1566 0.1968 31 1 3.9395 6.7742 3.3295 32 1 5.4572 4.8045 3.2722 33 1 4.2397 4.0087 2.2467 34 1 6.4933 3.0494 1.8597 35 1 7.1053 4.6635 1.4248 36 1 4.3981 -1.4016 0.0093 37 1 1.6174 -2.8765 1.0431 38 1 0.5151 -2.3148 -1.5834 39 1 2.4787 -5.0420 -0.8581 40 1 3.1650 -3.1709 -2.2531 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_12892148_13287730.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:54:24 Heat of formation + Delta-G solvation = -69.357156 kcal Electronic energy + Delta-G solvation = -22733.822166 eV Core-core repulsion = 19322.740221 eV Total energy + Delta-G solvation = -3411.081945 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.48067 -40.97991 -39.16552 -38.01074 -36.87645 -34.03988 -33.65837 -31.93193 -31.49748 -29.70938 -27.57994 -26.30153 -24.04006 -23.81531 -23.00575 -21.09951 -20.84349 -20.02315 -19.15539 -18.25955 -17.52326 -17.13285 -16.83759 -16.74004 -16.38763 -15.89001 -15.53765 -15.44008 -15.42636 -14.93480 -14.52356 -14.44516 -14.10178 -14.07541 -13.94150 -13.50810 -13.34153 -13.30587 -13.09832 -12.85639 -12.33665 -12.24843 -12.20253 -11.93381 -11.73382 -11.25972 -10.95794 -10.79281 -10.71057 -9.93355 -9.54274 -9.20934 -4.93281 0.78419 1.03994 1.44779 1.64863 1.79684 2.04067 2.36073 2.73572 3.02743 3.12774 3.52931 3.62454 3.66595 3.77187 3.78863 3.98338 4.02577 4.15539 4.16983 4.25122 4.32004 4.36028 4.39971 4.46723 4.48717 4.55841 4.60090 4.78645 4.87890 4.97570 5.00027 5.03187 5.06969 5.12152 5.22910 5.30699 5.62012 5.71520 5.95827 6.14517 6.17260 6.64778 6.71154 7.51821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.426 5.426 3 C 0.049 3.951 4 C -0.227 4.227 5 C 0.592 3.408 6 O -0.542 6.542 7 N -0.726 5.726 8 C 0.146 3.854 9 H 0.093 0.907 10 C -0.126 4.126 11 C -0.113 4.113 12 C 0.103 3.897 13 H 0.057 0.943 14 O -0.570 6.570 15 C -0.150 4.150 16 C -0.129 4.129 17 C -0.130 4.130 18 C -0.023 4.023 19 C -0.049 4.049 20 O -0.532 6.532 21 Si 0.712 3.288 22 H 0.075 0.925 23 H 0.081 0.919 24 H 0.111 0.889 25 H 0.168 0.832 26 H 0.395 0.605 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.379 0.621 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.158 0.842 37 H 0.122 0.878 38 H 0.378 0.622 39 H -0.253 1.253 40 H -0.257 1.257 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.077 2.139 0.511 3.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 N -0.100 5.100 3 C -0.087 4.087 4 C -0.237 4.237 5 C 0.380 3.620 6 O -0.419 6.419 7 N -0.378 5.378 8 C 0.041 3.959 9 H 0.111 0.889 10 C -0.164 4.164 11 C -0.151 4.151 12 C 0.044 3.956 13 H 0.075 0.925 14 O -0.376 6.376 15 C -0.188 4.188 16 C -0.168 4.168 17 C -0.154 4.154 18 C -0.131 4.131 19 C -0.158 4.158 20 O -0.339 6.339 21 Si 0.611 3.389 22 H 0.093 0.907 23 H 0.100 0.900 24 H 0.129 0.871 25 H 0.186 0.814 26 H 0.231 0.769 27 H 0.101 0.899 28 H 0.096 0.904 29 H 0.093 0.907 30 H 0.084 0.916 31 H 0.227 0.773 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.175 0.825 37 H 0.140 0.860 38 H 0.226 0.774 39 H -0.178 1.178 40 H -0.181 1.181 Dipole moment (debyes) X Y Z Total from point charges -2.013 0.957 -0.169 2.236 hybrid contribution -1.123 0.952 0.063 1.473 sum -3.136 1.909 -0.106 3.673 Atomic orbital electron populations 1.22549 0.76405 1.05844 1.04317 1.43482 1.06970 1.04955 1.54612 1.21933 0.90208 0.91760 1.04792 1.20330 0.91495 0.93990 1.17928 1.17384 0.88037 0.81300 0.75232 1.90778 1.25734 1.75191 1.50211 1.45960 1.09586 1.05684 1.76604 1.20933 0.88576 0.89831 0.96536 0.88868 1.21821 0.99576 0.95462 0.99519 1.21468 0.98491 1.01718 0.93422 1.21847 0.89722 0.92596 0.91423 0.92535 1.86500 1.41793 1.83213 1.26074 1.22230 0.99789 0.97281 0.99466 1.21890 0.97941 1.01764 0.95214 1.21622 0.94792 0.93075 1.05896 1.20749 0.90715 0.88988 1.12692 1.24787 0.92669 0.94851 1.03518 1.86551 1.29820 1.88741 1.28814 0.94191 0.85200 0.77373 0.82160 0.90672 0.90018 0.87116 0.81431 0.76934 0.89874 0.90384 0.90699 0.91556 0.77329 0.91651 0.91099 0.90713 0.90789 0.82478 0.86016 0.77405 1.17794 1.18067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 -0.13 10.71 59.85 0.64 0.51 16 2 N -0.43 0.12 3.09 -119.90 -0.37 -0.25 16 3 C 0.05 -0.01 10.83 -16.84 -0.18 -0.19 16 4 C -0.23 -0.49 6.29 -103.35 -0.65 -1.14 16 5 C 0.59 1.98 7.77 -12.59 -0.10 1.88 16 6 O -0.54 -3.81 16.63 5.26 0.09 -3.72 16 7 N -0.73 -0.16 4.22 -54.93 -0.23 -0.39 16 8 C 0.15 -0.02 2.78 -67.93 -0.19 -0.21 16 9 H 0.09 0.14 7.58 -51.93 -0.39 -0.26 16 10 C -0.13 0.25 5.61 -26.73 -0.15 0.10 16 11 C -0.11 0.16 5.40 -26.73 -0.14 0.02 16 12 C 0.10 -0.09 3.47 -26.73 -0.09 -0.19 16 13 H 0.06 -0.08 8.14 -51.93 -0.42 -0.50 16 14 O -0.57 -0.14 13.32 -35.23 -0.47 -0.61 16 15 C -0.15 0.12 5.39 -26.73 -0.14 -0.02 16 16 C -0.13 0.02 5.60 -26.73 -0.15 -0.13 16 17 C -0.13 -0.24 9.49 -37.50 -0.36 -0.60 16 18 C -0.02 -0.01 6.14 -81.86 -0.50 -0.51 16 19 C -0.05 0.04 2.98 36.01 0.11 0.15 16 20 O -0.53 0.40 9.95 -35.23 -0.35 0.05 16 21 Si 0.71 -0.65 31.12 -169.99 -5.29 -5.94 16 22 H 0.07 -0.20 8.14 -51.93 -0.42 -0.63 16 23 H 0.08 -0.35 8.13 -51.93 -0.42 -0.77 16 24 H 0.11 -0.31 4.93 -51.93 -0.26 -0.57 16 25 H 0.17 -0.55 7.45 -52.49 -0.39 -0.94 16 26 H 0.40 -0.69 5.81 -40.82 -0.24 -0.93 16 27 H 0.08 -0.22 8.14 -51.93 -0.42 -0.64 16 28 H 0.08 -0.17 8.14 -51.92 -0.42 -0.59 16 29 H 0.07 -0.08 8.14 -51.93 -0.42 -0.50 16 30 H 0.07 -0.10 6.50 -51.93 -0.34 -0.44 16 31 H 0.38 -1.23 9.08 45.56 0.41 -0.81 16 32 H 0.06 -0.08 8.14 -51.93 -0.42 -0.50 16 33 H 0.07 0.01 7.60 -51.93 -0.39 -0.38 16 34 H 0.07 0.14 8.14 -51.93 -0.42 -0.28 16 35 H 0.07 -0.08 8.14 -51.93 -0.42 -0.51 16 36 H 0.16 0.13 6.89 -52.49 -0.36 -0.23 16 37 H 0.12 -0.18 7.96 -51.93 -0.41 -0.59 16 38 H 0.38 -1.20 8.38 45.56 0.38 -0.82 16 39 H -0.25 -0.45 7.11 56.52 0.40 -0.04 16 40 H -0.26 -0.46 7.11 56.52 0.40 -0.06 16 LS Contribution 320.48 15.07 4.83 4.83 Total: 0.00 -8.67 320.48 -8.70 -17.36 By element: Atomic # 1 Polarization: -6.00 SS G_CDS: -4.99 Total: -11.00 kcal Atomic # 6 Polarization: 1.57 SS G_CDS: -1.91 Total: -0.34 kcal Atomic # 7 Polarization: -0.04 SS G_CDS: -0.60 Total: -0.64 kcal Atomic # 8 Polarization: -3.54 SS G_CDS: -0.73 Total: -4.27 kcal Atomic # 14 Polarization: -0.65 SS G_CDS: -5.29 Total: -5.94 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -8.67 -8.70 -17.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12892148_13287730.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.993 kcal (2) G-P(sol) polarization free energy of solvation -8.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds