Wall clock time and date at job start Sat Mar 6 2021 23:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34663 * 124.85054 * 2 1 4 4 C 1.36767 * 108.39657 * 180.15206 * 3 2 1 5 5 C 1.47263 * 126.94308 * 179.83584 * 4 3 2 6 6 O 1.21623 * 120.00126 * 179.68585 * 5 4 3 7 7 N 1.34777 * 119.99630 * 359.68272 * 5 4 3 8 8 C 1.46499 * 119.99665 * 179.72408 * 7 5 4 9 9 H 1.08999 * 109.47480 * 35.27807 * 8 7 5 10 10 C 1.52999 * 109.47493 * 155.28120 * 8 7 5 11 11 C 1.53003 * 109.47272 * 59.99227 * 10 8 7 12 12 C 1.53001 * 109.46331 * 60.00742 * 11 10 8 13 13 H 1.09005 * 109.47539 * 60.00121 * 12 11 10 14 14 O 1.42903 * 109.46701 * 179.97438 * 12 11 10 15 15 C 1.52996 * 109.47349 * 299.99577 * 12 11 10 16 16 C 1.52999 * 109.47136 * 275.27771 * 8 7 5 17 17 C 1.46693 * 106.11423 * 359.57576 * 4 3 2 18 18 C 1.34478 * 106.33310 * 0.26240 * 17 4 3 19 19 C 1.50704 * 125.57165 * 179.97438 * 18 17 4 20 20 O 1.42901 * 109.46882 * 210.02367 * 19 18 17 21 21 Si 1.86295 * 109.46832 * 330.02372 * 19 18 17 22 22 H 1.09000 * 109.47084 * 270.33439 * 1 2 3 23 23 H 1.08995 * 109.47271 * 30.33805 * 1 2 3 24 24 H 1.09001 * 109.47001 * 150.33715 * 1 2 3 25 25 H 1.08001 * 125.80273 * 0.02562 * 3 2 1 26 26 H 0.97001 * 120.00485 * 0.02562 * 7 5 4 27 27 H 1.08991 * 109.47925 * 180.02562 * 10 8 7 28 28 H 1.09009 * 109.46506 * 300.00089 * 10 8 7 29 29 H 1.08997 * 109.47156 * 180.02562 * 11 10 8 30 30 H 1.08991 * 109.47365 * 300.01225 * 11 10 8 31 31 H 0.96700 * 113.99840 * 179.97438 * 14 12 11 32 32 H 1.08997 * 109.47425 * 180.02562 * 15 12 11 33 33 H 1.08996 * 109.47216 * 300.00101 * 15 12 11 34 34 H 1.08999 * 109.47488 * 60.00276 * 16 8 7 35 35 H 1.09005 * 109.47368 * 180.02562 * 16 8 7 36 36 H 1.07995 * 126.82871 * 180.30028 * 17 4 3 37 37 H 1.09000 * 109.47149 * 90.02476 * 19 18 17 38 38 H 0.96700 * 114.00189 * 59.99757 * 20 19 18 39 39 H 1.48503 * 109.99567 * 180.02562 * 21 19 18 40 40 H 1.48500 * 110.00041 * 301.31527 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2345 1.1051 0.0000 4 6 3.5462 0.7177 -0.0034 5 6 4.7284 1.5958 -0.0081 6 8 5.8446 1.1129 -0.0050 7 7 4.5733 2.9346 -0.0157 8 6 5.7493 3.8082 -0.0142 9 1 6.5443 3.3484 -0.6013 10 6 5.3806 5.1611 -0.6262 11 6 4.2646 5.8065 0.1979 12 6 4.7459 6.0114 1.6357 13 1 5.6210 6.6615 1.6369 14 8 3.7039 6.6148 2.4053 15 6 5.1147 4.6586 2.2478 16 6 6.2305 4.0131 1.4236 17 6 3.5375 -0.7492 0.0048 18 6 2.2448 -1.1197 0.0065 19 6 1.7398 -2.5396 0.0137 20 8 0.4812 -2.6010 -0.6603 21 14 2.9654 -3.6389 -0.8579 22 1 -0.3633 0.0060 1.0276 23 1 -0.3633 0.8869 -0.5190 24 1 -0.3633 -0.8930 -0.5086 25 1 1.8767 2.1241 0.0004 26 1 3.6830 3.3198 -0.0178 27 1 6.2556 5.8109 -0.6255 28 1 5.0377 5.0150 -1.6506 29 1 4.0017 6.7701 -0.2384 30 1 3.3897 5.1566 0.1968 31 1 3.9395 6.7742 3.3295 32 1 5.4572 4.8045 3.2722 33 1 4.2397 4.0087 2.2467 34 1 6.4933 3.0494 1.8597 35 1 7.1053 4.6635 1.4248 36 1 4.3981 -1.4016 0.0093 37 1 1.6174 -2.8765 1.0431 38 1 0.5151 -2.3148 -1.5834 39 1 2.4787 -5.0420 -0.8581 40 1 3.1650 -3.1709 -2.2531 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12892148_13287730.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 23:54:23 Heat of formation + Delta-G solvation = -71.013105 kcal Electronic energy + Delta-G solvation = -22733.893973 eV Core-core repulsion = 19322.740221 eV Total energy + Delta-G solvation = -3411.153752 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.48354 -41.02825 -39.26043 -37.96062 -36.90312 -34.13320 -33.61735 -31.86639 -31.49641 -29.68711 -27.47795 -26.28392 -24.07409 -23.74380 -22.98559 -21.14790 -20.81788 -20.06269 -19.14080 -18.19207 -17.48931 -17.14852 -16.81080 -16.79269 -16.39752 -15.83703 -15.58395 -15.40153 -15.38937 -14.91787 -14.58844 -14.50332 -14.12021 -14.06762 -13.90278 -13.45631 -13.26048 -13.23156 -13.03123 -12.79595 -12.37012 -12.20042 -12.15121 -11.98540 -11.71810 -11.18472 -10.98348 -10.90521 -10.74383 -10.07474 -9.56482 -9.22228 -4.89864 0.73401 1.02664 1.43767 1.62832 1.80318 2.05804 2.31437 2.57453 3.14955 3.26173 3.55454 3.67775 3.73678 3.87924 3.91304 4.06841 4.08198 4.21703 4.31744 4.39478 4.43067 4.44825 4.45909 4.50710 4.52905 4.64408 4.78104 4.88900 4.91580 4.96676 5.05740 5.07528 5.12811 5.16836 5.30150 5.34209 5.57244 5.66484 5.95815 6.21270 6.31291 6.64716 6.86485 7.36260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 N -0.426 5.426 3 C 0.066 3.934 4 C -0.260 4.260 5 C 0.588 3.412 6 O -0.590 6.590 7 N -0.711 5.711 8 C 0.144 3.856 9 H 0.073 0.927 10 C -0.116 4.116 11 C -0.113 4.113 12 C 0.104 3.896 13 H 0.064 0.936 14 O -0.587 6.587 15 C -0.142 4.142 16 C -0.126 4.126 17 C -0.155 4.155 18 C -0.023 4.023 19 C -0.044 4.044 20 O -0.538 6.538 21 Si 0.774 3.226 22 H 0.078 0.922 23 H 0.103 0.897 24 H 0.112 0.888 25 H 0.200 0.800 26 H 0.407 0.593 27 H 0.093 0.907 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.392 0.608 32 H 0.070 0.930 33 H 0.061 0.939 34 H 0.048 0.952 35 H 0.085 0.915 36 H 0.156 0.844 37 H 0.132 0.868 38 H 0.388 0.612 39 H -0.287 1.287 40 H -0.294 1.294 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.482 3.432 0.710 4.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 N -0.100 5.100 3 C -0.071 4.071 4 C -0.270 4.270 5 C 0.378 3.622 6 O -0.472 6.472 7 N -0.363 5.363 8 C 0.039 3.961 9 H 0.092 0.908 10 C -0.153 4.153 11 C -0.151 4.151 12 C 0.045 3.955 13 H 0.082 0.918 14 O -0.395 6.395 15 C -0.180 4.180 16 C -0.164 4.164 17 C -0.179 4.179 18 C -0.132 4.132 19 C -0.153 4.153 20 O -0.347 6.347 21 Si 0.678 3.322 22 H 0.097 0.903 23 H 0.121 0.879 24 H 0.130 0.870 25 H 0.217 0.783 26 H 0.244 0.756 27 H 0.112 0.888 28 H 0.102 0.898 29 H 0.094 0.906 30 H 0.087 0.913 31 H 0.242 0.758 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.067 0.933 35 H 0.104 0.896 36 H 0.173 0.827 37 H 0.150 0.850 38 H 0.238 0.762 39 H -0.214 1.214 40 H -0.221 1.221 Dipole moment (debyes) X Y Z Total from point charges -3.452 2.284 0.048 4.139 hybrid contribution -0.722 0.551 -0.022 0.909 sum -4.174 2.835 0.026 5.046 Atomic orbital electron populations 1.22734 0.74707 1.07036 1.04909 1.43718 1.07993 1.04601 1.53692 1.22339 0.89288 0.93047 1.02433 1.20382 0.92188 0.94114 1.20361 1.17659 0.87776 0.82192 0.74561 1.90741 1.27508 1.76125 1.52836 1.45849 1.10374 1.04826 1.75272 1.20969 0.88042 0.90587 0.96490 0.90834 1.21756 0.99978 0.94118 0.99494 1.21479 0.98592 1.01808 0.93191 1.21866 0.89818 0.92275 0.91498 0.91826 1.86465 1.42473 1.83255 1.27327 1.22153 0.98958 0.97262 0.99631 1.21833 0.98801 1.00727 0.95087 1.21814 0.95599 0.93472 1.07004 1.20830 0.90444 0.89782 1.12141 1.24756 0.92502 0.94016 1.04074 1.86535 1.29623 1.88777 1.29739 0.93298 0.84480 0.74573 0.79845 0.90320 0.87865 0.86976 0.78293 0.75578 0.88814 0.89785 0.90591 0.91320 0.75801 0.91175 0.92021 0.93292 0.89630 0.82674 0.84996 0.76220 1.21399 1.22092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 -0.33 10.71 127.77 1.37 1.04 16 2 N -0.43 0.65 3.09 -533.25 -1.65 -0.99 16 3 C 0.07 -0.09 10.83 83.91 0.91 0.82 16 4 C -0.26 -1.36 6.29 -19.04 -0.12 -1.48 16 5 C 0.59 4.90 7.77 86.62 0.67 5.58 16 6 O -0.59 -10.00 16.63 -4.10 -0.07 -10.07 16 7 N -0.71 -0.77 4.22 -445.96 -1.88 -2.65 16 8 C 0.14 0.07 2.78 44.99 0.13 0.20 16 9 H 0.07 0.36 7.58 -2.39 -0.02 0.34 16 10 C -0.12 0.53 5.61 30.60 0.17 0.70 16 11 C -0.11 0.44 5.40 30.60 0.17 0.61 16 12 C 0.10 -0.29 3.47 30.59 0.11 -0.18 16 13 H 0.06 -0.25 8.14 -2.38 -0.02 -0.27 16 14 O -0.59 0.31 13.32 -148.98 -1.98 -1.68 16 15 C -0.14 0.25 5.39 30.59 0.16 0.42 16 16 C -0.13 -0.06 5.60 30.59 0.17 0.11 16 17 C -0.15 -0.78 9.49 23.62 0.22 -0.55 16 18 C -0.02 -0.03 6.14 40.98 0.25 0.23 16 19 C -0.04 0.07 2.98 71.24 0.21 0.29 16 20 O -0.54 1.14 9.95 -148.98 -1.48 -0.35 16 21 Si 0.77 -0.51 31.12 68.60 2.13 1.62 16 22 H 0.08 -0.57 8.14 -2.39 -0.02 -0.59 16 23 H 0.10 -1.16 8.13 -2.39 -0.02 -1.18 16 24 H 0.11 -0.80 4.93 -2.39 -0.01 -0.81 16 25 H 0.20 -1.76 7.45 -2.91 -0.02 -1.78 16 26 H 0.41 -1.61 5.81 -92.71 -0.54 -2.15 16 27 H 0.09 -0.58 8.14 -2.39 -0.02 -0.60 16 28 H 0.08 -0.44 8.14 -2.38 -0.02 -0.46 16 29 H 0.08 -0.26 8.14 -2.39 -0.02 -0.28 16 30 H 0.07 -0.31 6.50 -2.39 -0.02 -0.32 16 31 H 0.39 -2.88 9.08 -74.06 -0.67 -3.55 16 32 H 0.07 -0.19 8.14 -2.39 -0.02 -0.20 16 33 H 0.06 0.02 7.60 -2.39 -0.02 0.00 16 34 H 0.05 0.29 8.14 -2.39 -0.02 0.27 16 35 H 0.09 -0.17 8.14 -2.38 -0.02 -0.19 16 36 H 0.16 0.62 6.89 -2.91 -0.02 0.60 16 37 H 0.13 -0.46 7.96 -2.39 -0.02 -0.48 16 38 H 0.39 -2.65 8.38 -74.06 -0.62 -3.27 16 39 H -0.29 -1.43 7.11 99.48 0.71 -0.72 16 40 H -0.29 -1.64 7.11 99.48 0.71 -0.94 16 Total: 0.00 -21.71 320.48 -1.22 -22.94 By element: Atomic # 1 Polarization: -15.88 SS G_CDS: -0.72 Total: -16.60 kcal Atomic # 6 Polarization: 3.35 SS G_CDS: 4.42 Total: 7.78 kcal Atomic # 7 Polarization: -0.12 SS G_CDS: -3.53 Total: -3.65 kcal Atomic # 8 Polarization: -8.56 SS G_CDS: -3.54 Total: -12.09 kcal Atomic # 14 Polarization: -0.51 SS G_CDS: 2.13 Total: 1.62 kcal Total: -21.71 -1.22 -22.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12892148_13287730.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.077 kcal (2) G-P(sol) polarization free energy of solvation -21.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds