Wall clock time and date at job start Sat Mar 6 2021 17:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42909 * 1 3 3 Si 1.86294 * 109.47137 * 2 1 4 4 C 1.50703 * 109.47058 * 239.99732 * 2 1 3 5 5 C 1.38262 * 119.94992 * 300.00430 * 4 2 1 6 6 C 1.38137 * 120.05917 * 179.97438 * 5 4 2 7 7 C 1.38733 * 119.94429 * 359.97438 * 6 5 4 8 8 O 1.35902 * 120.05526 * 180.02562 * 7 6 5 9 9 C 1.42901 * 116.99954 * 180.02562 * 8 7 6 10 10 C 1.50696 * 109.47280 * 180.02562 * 9 8 7 11 11 O 1.21281 * 119.99909 * 359.97438 * 10 9 8 12 12 N 1.34781 * 120.00051 * 180.02562 * 10 9 8 13 13 C 1.46496 * 119.99775 * 179.97438 * 12 10 9 14 14 H 1.08996 * 109.47565 * 34.99894 * 13 12 10 15 15 C 1.52997 * 109.46953 * 154.99854 * 13 12 10 16 16 C 1.53006 * 109.47127 * 179.97438 * 15 13 12 17 17 C 1.52999 * 109.46626 * 299.99539 * 16 15 13 18 18 H 1.09002 * 109.46719 * 180.02562 * 17 16 15 19 19 O 1.42900 * 109.47815 * 299.99894 * 17 16 15 20 20 C 1.52997 * 109.46991 * 60.00378 * 17 16 15 21 21 C 1.52996 * 109.47131 * 299.99311 * 20 17 16 22 22 C 1.38731 * 119.88590 * 0.27697 * 7 6 5 23 23 C 1.38144 * 119.94501 * 359.42092 * 22 7 6 24 24 H 0.96697 * 113.99467 * 59.99921 * 1 2 3 25 25 H 1.09001 * 109.46717 * 120.00207 * 2 1 3 26 26 H 1.48500 * 110.00071 * 60.00118 * 3 2 1 27 27 H 1.48501 * 109.99868 * 181.31677 * 3 2 1 28 28 H 1.08009 * 119.97054 * 359.97438 * 5 4 2 29 29 H 1.08005 * 120.02866 * 180.02562 * 6 5 4 30 30 H 1.08994 * 109.47209 * 59.99696 * 9 8 7 31 31 H 1.09005 * 109.46598 * 300.00195 * 9 8 7 32 32 H 0.97001 * 119.99650 * 359.97438 * 12 10 9 33 33 H 1.09001 * 109.47502 * 60.00124 * 15 13 12 34 34 H 1.09001 * 109.47289 * 299.99920 * 15 13 12 35 35 H 1.08993 * 109.46955 * 60.00011 * 16 15 13 36 36 H 1.09000 * 109.47050 * 179.97438 * 16 15 13 37 37 H 0.96699 * 114.00011 * 180.02562 * 19 17 16 38 38 H 1.09001 * 109.47289 * 179.97438 * 20 17 16 39 39 H 1.09000 * 109.47611 * 59.99933 * 20 17 16 40 40 H 1.08996 * 109.47452 * 300.00000 * 21 20 17 41 41 H 1.09000 * 109.47054 * 180.02562 * 21 20 17 42 42 H 1.08002 * 120.02884 * 179.72361 * 22 7 6 43 43 H 1.08002 * 119.97463 * 180.27707 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7105 -1.2305 5 6 1.5967 -2.0342 -1.4482 6 6 2.0554 -2.6875 -2.5756 7 6 2.8523 -2.0141 -3.4900 8 8 3.3045 -2.6544 -4.6002 9 6 4.1206 -1.8991 -5.4977 10 6 4.5241 -2.7674 -6.6614 11 8 4.1500 -3.9197 -6.7165 12 7 5.3015 -2.2636 -7.6404 13 6 5.6941 -3.1079 -8.7714 14 1 4.8799 -3.7901 -9.0155 15 6 6.0014 -2.2262 -9.9834 16 6 6.4122 -3.1079 -11.1645 17 6 7.6582 -3.9131 -10.7906 18 1 7.9511 -4.5409 -11.6321 19 8 8.7254 -3.0184 -10.4704 20 6 7.3509 -4.7948 -9.5785 21 6 6.9402 -3.9132 -8.3975 22 6 3.1911 -0.6874 -3.2666 23 6 2.7246 -0.0368 -2.1408 24 1 -0.3932 0.4417 -0.7650 25 1 1.7923 -0.5139 0.8900 26 1 1.5616 2.4678 1.2085 27 1 3.5347 1.7702 -0.0321 28 1 0.9759 -2.5579 -0.7362 29 1 1.7933 -3.7214 -2.7454 30 1 5.0125 -1.5542 -4.9748 31 1 3.5588 -1.0396 -5.8636 32 1 5.6010 -1.3420 -7.5960 33 1 6.8158 -1.5440 -9.7394 34 1 5.1139 -1.6521 -10.2495 35 1 5.5982 -3.7904 -11.4087 36 1 6.6306 -2.4798 -12.0281 37 1 9.5491 -3.4609 -10.2237 38 1 8.2385 -5.3688 -9.3124 39 1 6.5370 -5.4775 -9.8227 40 1 7.7542 -3.2306 -8.1532 41 1 6.7217 -4.5413 -7.5339 42 1 3.8150 -0.1623 -3.9748 43 1 2.9844 0.9973 -1.9687 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12892148_2989410.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 17:55:25 Heat of formation + Delta-G solvation = -132.645283 kcal Electronic energy + Delta-G solvation = -24873.207099 eV Core-core repulsion = 21077.898354 eV Total energy + Delta-G solvation = -3795.308746 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 308.150 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.64031 -40.93990 -39.77217 -38.92797 -37.14328 -36.65519 -34.39402 -32.42835 -31.84576 -31.74364 -30.61919 -28.65197 -26.20944 -24.21332 -23.82690 -23.26763 -22.30588 -21.61160 -20.84872 -19.50993 -18.52862 -18.13464 -17.77069 -17.42293 -17.25306 -16.92271 -16.59947 -16.20396 -15.97061 -15.79849 -15.57644 -15.35227 -15.01303 -14.65020 -14.42360 -14.33069 -14.06112 -13.77381 -13.67025 -13.54114 -13.36043 -13.22603 -13.06166 -12.46201 -12.25234 -12.09048 -12.05986 -12.05376 -11.73634 -11.62214 -11.27437 -11.06731 -10.68448 -10.40755 -10.16633 -10.05639 -9.23685 -4.98508 0.26338 0.29588 1.34539 1.41900 1.46851 1.64874 1.99059 2.57415 2.64792 3.38309 3.47539 3.56216 3.68777 3.71235 3.75829 3.82541 3.94703 3.98327 4.02068 4.05823 4.06843 4.21641 4.29770 4.37571 4.41200 4.44134 4.50121 4.50410 4.63454 4.66247 4.88477 4.96037 4.96177 5.03745 5.13304 5.13554 5.14699 5.24331 5.24705 5.32703 5.46226 5.48740 5.68733 6.25076 6.45559 6.79883 6.89662 7.10648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.559 6.559 2 C -0.074 4.074 3 Si 0.783 3.217 4 C -0.161 4.161 5 C -0.061 4.061 6 C -0.167 4.167 7 C 0.120 3.880 8 O -0.320 6.320 9 C 0.037 3.963 10 C 0.512 3.488 11 O -0.573 6.573 12 N -0.706 5.706 13 C 0.148 3.852 14 H 0.066 0.934 15 C -0.113 4.113 16 C -0.114 4.114 17 C 0.104 3.896 18 H 0.065 0.935 19 O -0.578 6.578 20 C -0.148 4.148 21 C -0.120 4.120 22 C -0.200 4.200 23 C -0.076 4.076 24 H 0.395 0.605 25 H 0.103 0.897 26 H -0.304 1.304 27 H -0.281 1.281 28 H 0.133 0.867 29 H 0.126 0.874 30 H 0.124 0.876 31 H 0.129 0.871 32 H 0.420 0.580 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.390 0.610 38 H 0.076 0.924 39 H 0.069 0.931 40 H 0.076 0.924 41 H 0.041 0.959 42 H 0.165 0.835 43 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.237 6.040 -4.682 8.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.367 6.367 2 C -0.183 4.183 3 Si 0.689 3.311 4 C -0.161 4.161 5 C -0.079 4.079 6 C -0.185 4.185 7 C 0.075 3.925 8 O -0.234 6.234 9 C -0.041 4.041 10 C 0.298 3.702 11 O -0.451 6.451 12 N -0.360 5.360 13 C 0.044 3.956 14 H 0.084 0.916 15 C -0.151 4.151 16 C -0.152 4.152 17 C 0.046 3.954 18 H 0.083 0.917 19 O -0.385 6.385 20 C -0.187 4.187 21 C -0.159 4.159 22 C -0.218 4.218 23 C -0.093 4.093 24 H 0.245 0.755 25 H 0.120 0.880 26 H -0.232 1.232 27 H -0.208 1.208 28 H 0.151 0.849 29 H 0.144 0.856 30 H 0.142 0.858 31 H 0.146 0.854 32 H 0.257 0.743 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.101 0.899 36 H 0.097 0.903 37 H 0.240 0.760 38 H 0.095 0.905 39 H 0.088 0.912 40 H 0.095 0.905 41 H 0.060 0.940 42 H 0.182 0.818 43 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 3.041 5.739 -3.969 7.611 hybrid contribution 0.590 -1.103 0.544 1.364 sum 3.631 4.635 -3.425 6.812 Atomic orbital electron populations 1.86464 1.17481 1.82223 1.50497 1.25196 0.85160 1.11075 0.96913 0.93732 0.77730 0.74880 0.84739 1.20366 1.02049 0.95285 0.98437 1.20898 0.97178 0.94076 0.95722 1.20621 1.01581 1.01257 0.95091 1.19218 0.94682 0.92050 0.86538 1.86129 1.65143 1.40382 1.31701 1.22744 0.97672 0.94308 0.89344 1.20580 0.78071 0.87605 0.83914 1.90756 1.55888 1.20197 1.78276 1.45790 1.51285 1.16774 1.22144 1.20989 0.96372 0.92650 0.85621 0.91599 1.21638 1.02400 0.97980 0.93072 1.21561 0.96198 0.99261 0.98200 1.21792 0.87933 0.90442 0.95259 0.91686 1.86460 1.23792 1.37387 1.90905 1.22208 1.02543 0.98244 0.95680 1.21749 0.97735 0.98655 0.97759 1.21506 1.05689 0.93289 1.01345 1.21072 0.95426 1.00057 0.92754 0.75513 0.87995 1.23214 1.20791 0.84921 0.85634 0.85850 0.85358 0.74251 0.90127 0.90409 0.89908 0.90330 0.76029 0.90512 0.91186 0.90531 0.93993 0.81783 0.82914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.38 12.77 -148.98 -1.90 -2.28 16 2 C -0.07 0.03 2.82 71.24 0.20 0.23 16 3 Si 0.78 -2.55 29.78 68.60 2.04 -0.51 16 4 C -0.16 -0.06 5.39 -19.85 -0.11 -0.16 16 5 C -0.06 -0.19 9.60 22.25 0.21 0.02 16 6 C -0.17 -0.88 9.99 22.36 0.22 -0.66 16 7 C 0.12 0.44 6.69 22.51 0.15 0.59 16 8 O -0.32 -2.03 9.67 -73.41 -0.71 -2.74 16 9 C 0.04 -0.11 5.22 71.23 0.37 0.27 16 10 C 0.51 1.76 7.87 87.66 0.69 2.45 16 11 O -0.57 -8.63 16.16 16.01 0.26 -8.37 16 12 N -0.71 2.11 5.08 -442.54 -2.25 -0.14 16 13 C 0.15 -0.07 2.45 44.99 0.11 0.05 16 14 H 0.07 0.30 7.58 -2.39 -0.02 0.29 16 15 C -0.11 0.45 5.25 30.60 0.16 0.61 16 16 C -0.11 0.41 5.66 30.60 0.17 0.58 16 17 C 0.10 -0.36 3.77 30.59 0.12 -0.24 16 18 H 0.07 -0.31 8.14 -2.39 -0.02 -0.33 16 19 O -0.58 1.48 11.97 -148.98 -1.78 -0.30 16 20 C -0.15 0.33 5.64 30.59 0.17 0.50 16 21 C -0.12 -0.04 5.35 30.59 0.16 0.13 16 22 C -0.20 0.49 9.04 22.37 0.20 0.70 16 23 C -0.08 0.21 8.66 22.25 0.19 0.40 16 24 H 0.39 -2.96 8.70 -74.06 -0.64 -3.60 16 25 H 0.10 0.13 7.96 -2.39 -0.02 0.11 16 26 H -0.30 -1.49 7.11 99.48 0.71 -0.78 16 27 H -0.28 -0.15 7.11 99.48 0.71 0.56 16 28 H 0.13 0.32 8.06 -2.91 -0.02 0.30 16 29 H 0.13 0.74 8.06 -2.91 -0.02 0.72 16 30 H 0.12 -1.10 7.65 -2.39 -0.02 -1.12 16 31 H 0.13 -1.25 7.67 -2.38 -0.02 -1.27 16 32 H 0.42 -4.32 8.60 -92.71 -0.80 -5.12 16 33 H 0.08 -0.31 7.68 -2.39 -0.02 -0.33 16 34 H 0.08 -0.42 8.14 -2.39 -0.02 -0.44 16 35 H 0.08 -0.36 8.14 -2.39 -0.02 -0.38 16 36 H 0.08 -0.28 8.14 -2.39 -0.02 -0.30 16 37 H 0.39 -3.47 9.08 -74.06 -0.67 -4.14 16 38 H 0.08 -0.28 8.14 -2.39 -0.02 -0.30 16 39 H 0.07 -0.07 8.14 -2.39 -0.02 -0.09 16 40 H 0.08 -0.05 7.68 -2.39 -0.02 -0.07 16 41 H 0.04 0.23 8.14 -2.39 -0.02 0.21 16 42 H 0.16 -1.61 6.30 -2.91 -0.02 -1.62 16 43 H 0.15 -1.23 4.87 -2.91 -0.01 -1.24 16 Total: 0.00 -25.50 349.94 -2.33 -27.84 By element: Atomic # 1 Polarization: -17.93 SS G_CDS: -1.03 Total: -18.95 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: 3.03 Total: 5.46 kcal Atomic # 7 Polarization: 2.11 SS G_CDS: -2.25 Total: -0.14 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: -4.14 Total: -13.70 kcal Atomic # 14 Polarization: -2.55 SS G_CDS: 2.04 Total: -0.51 kcal Total: -25.50 -2.33 -27.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12892148_2989410.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.809 kcal (2) G-P(sol) polarization free energy of solvation -25.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds