Wall clock time and date at job start Sat Mar 6 2021 17:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86298 * 109.47342 * 2 1 4 4 C 1.50706 * 109.46772 * 120.00089 * 2 1 3 5 5 C 1.38246 * 119.96602 * 244.99732 * 4 2 1 6 6 C 1.38291 * 120.10740 * 179.97438 * 5 4 2 7 7 C 1.38127 * 120.05716 * 0.02562 * 6 5 4 8 8 C 1.38757 * 119.94141 * 359.96932 * 7 6 5 9 9 O 1.35902 * 120.05136 * 180.02562 * 8 7 6 10 10 C 1.42898 * 117.00292 * 0.02562 * 9 8 7 11 11 C 1.52997 * 109.47341 * 179.97438 * 10 9 8 12 12 C 1.50694 * 109.47487 * 179.97438 * 11 10 9 13 13 O 1.21287 * 119.99733 * 0.02562 * 12 11 10 14 14 N 1.34772 * 120.00565 * 179.97438 * 12 11 10 15 15 C 1.46500 * 120.00618 * 179.97438 * 14 12 11 16 16 H 1.08998 * 109.46447 * 35.00364 * 15 14 12 17 17 C 1.53001 * 109.47172 * 155.00048 * 15 14 12 18 18 C 1.53000 * 109.46749 * 60.00293 * 17 15 14 19 19 C 1.53000 * 109.47244 * 60.00116 * 18 17 15 20 20 H 1.09000 * 109.46855 * 59.99385 * 19 18 17 21 21 O 1.42897 * 109.46902 * 179.97438 * 19 18 17 22 22 C 1.52997 * 109.46831 * 299.99769 * 19 18 17 23 23 C 1.52998 * 109.47018 * 275.00680 * 15 14 12 24 24 C 1.38163 * 119.97459 * 64.72458 * 4 2 1 25 25 H 0.96697 * 114.00254 * 300.00272 * 1 2 3 26 26 H 1.09003 * 109.47547 * 239.99589 * 2 1 3 27 27 H 1.48500 * 109.99906 * 299.99718 * 3 2 1 28 28 H 1.48504 * 110.00131 * 61.31350 * 3 2 1 29 29 H 1.07998 * 119.94647 * 359.97438 * 5 4 2 30 30 H 1.08005 * 119.97267 * 179.97438 * 6 5 4 31 31 H 1.07998 * 120.02924 * 179.97438 * 7 6 5 32 32 H 1.09007 * 109.46836 * 299.99520 * 10 9 8 33 33 H 1.09001 * 109.47471 * 59.99283 * 10 9 8 34 34 H 1.08999 * 109.47100 * 299.99953 * 11 10 9 35 35 H 1.09001 * 109.47244 * 59.99364 * 11 10 9 36 36 H 0.97008 * 119.99416 * 0.02562 * 14 12 11 37 37 H 1.09000 * 109.46817 * 180.02562 * 17 15 14 38 38 H 1.09002 * 109.47297 * 300.00202 * 17 15 14 39 39 H 1.09011 * 109.46463 * 179.97438 * 18 17 15 40 40 H 1.09000 * 109.47391 * 299.99562 * 18 17 15 41 41 H 0.96701 * 113.99840 * 179.97438 * 21 19 18 42 42 H 1.09002 * 109.46975 * 180.02562 * 22 19 18 43 43 H 1.09000 * 109.47088 * 299.99474 * 22 19 18 44 44 H 1.08995 * 109.47503 * 59.99633 * 23 15 14 45 45 H 1.08999 * 109.46453 * 180.02562 * 23 15 14 46 46 H 1.08004 * 120.02595 * 0.02562 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9312 -0.7105 1.2305 5 6 2.6386 -0.0117 2.1910 6 6 3.1004 -0.6606 3.3215 7 6 2.8562 -2.0092 3.4934 8 6 2.1464 -2.7127 2.5309 9 8 1.9044 -4.0395 2.6980 10 6 2.4098 -4.6462 3.8891 11 6 2.0414 -6.1311 3.9009 12 6 2.5748 -6.7710 5.1566 13 8 3.1889 -6.1048 5.9630 14 7 2.3688 -8.0833 5.3842 15 6 2.8879 -8.7056 6.6046 16 1 2.8341 -7.9924 7.4272 17 6 2.0498 -9.9398 6.9440 18 6 2.1254 -10.9408 5.7894 19 6 3.5811 -11.3574 5.5701 20 1 3.9672 -11.8203 6.4782 21 8 3.6515 -12.2928 4.4920 22 6 4.4191 -10.1232 5.2307 23 6 4.3437 -9.1221 6.3853 24 6 1.6795 -2.0583 1.4005 25 1 -0.3933 0.4417 0.7650 26 1 1.7924 -0.5139 -0.8899 27 1 1.5616 2.4678 -1.2085 28 1 1.5878 2.4586 1.2242 29 1 2.8309 1.0427 2.0582 30 1 3.6532 -0.1126 4.0703 31 1 3.2175 -2.5156 4.3763 32 1 3.4943 -4.5403 3.9187 33 1 1.9730 -4.1568 4.7596 34 1 0.9569 -6.2366 3.8714 35 1 2.4778 -6.6207 3.0303 36 1 1.8774 -8.6160 4.7394 37 1 2.4358 -10.4025 7.8524 38 1 1.0127 -9.6430 7.1003 39 1 1.5285 -11.8203 6.0315 40 1 1.7391 -10.4779 4.8813 41 1 4.5471 -12.6007 4.2963 42 1 5.4562 -10.4201 5.0740 43 1 4.0330 -9.6603 4.3226 44 1 4.9407 -8.2429 6.1435 45 1 4.7296 -9.5855 7.2932 46 1 1.1234 -2.6028 0.6517 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12892148_4549614.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 17:55:30 Heat of formation + Delta-G solvation = -138.602185 kcal Electronic energy + Delta-G solvation = -26733.119187 eV Core-core repulsion = 22782.014511 eV Total energy + Delta-G solvation = -3951.104675 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 322.166 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.56523 -41.17142 -39.68643 -39.10202 -37.40717 -37.00738 -34.20558 -33.17394 -32.50453 -31.90704 -30.93291 -29.67234 -27.05339 -25.49366 -23.79173 -23.71022 -23.20836 -22.27983 -21.59538 -20.25559 -19.43035 -18.35031 -18.22445 -17.76728 -17.52844 -17.27864 -17.10398 -16.73306 -16.53318 -16.19114 -15.90181 -15.57534 -15.40372 -14.92636 -14.88139 -14.66027 -14.50453 -14.14778 -14.11083 -13.97151 -13.87287 -13.29608 -13.23756 -12.97225 -12.89987 -12.82752 -12.41989 -12.24550 -12.19311 -11.97272 -11.84235 -11.77645 -11.57667 -11.22364 -11.06696 -10.78113 -10.66470 -10.13290 -9.97213 -9.29718 -4.90501 0.17752 0.37237 1.29033 1.50462 1.61424 1.69890 1.96135 2.48346 2.63716 3.23165 3.40730 3.52759 3.61586 3.64885 3.68647 3.82408 3.85906 3.92484 4.03758 4.04593 4.07708 4.18172 4.21650 4.25808 4.33971 4.37923 4.41738 4.47603 4.53227 4.58896 4.62909 4.64364 4.74506 4.84913 4.95952 4.97743 5.02371 5.08545 5.12195 5.23962 5.25959 5.29835 5.36032 5.42037 5.47261 5.68481 6.30687 6.42926 6.46512 6.84246 7.12521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.548 6.548 2 C -0.087 4.087 3 Si 0.777 3.223 4 C -0.081 4.081 5 C -0.158 4.158 6 C -0.075 4.075 7 C -0.210 4.210 8 C 0.116 3.884 9 O -0.325 6.325 10 C 0.076 3.924 11 C -0.135 4.135 12 C 0.521 3.479 13 O -0.581 6.581 14 N -0.710 5.710 15 C 0.142 3.858 16 H 0.077 0.923 17 C -0.116 4.116 18 C -0.115 4.115 19 C 0.103 3.897 20 H 0.063 0.937 21 O -0.588 6.588 22 C -0.144 4.144 23 C -0.126 4.126 24 C -0.141 4.141 25 H 0.386 0.614 26 H 0.125 0.875 27 H -0.302 1.302 28 H -0.280 1.280 29 H 0.147 0.853 30 H 0.153 0.847 31 H 0.136 0.864 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.124 0.876 35 H 0.123 0.877 36 H 0.413 0.587 37 H 0.092 0.908 38 H 0.085 0.915 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.393 0.607 42 H 0.070 0.930 43 H 0.064 0.936 44 H 0.052 0.948 45 H 0.084 0.916 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.387 -2.782 1.569 3.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.356 6.356 2 C -0.196 4.196 3 Si 0.682 3.318 4 C -0.081 4.081 5 C -0.176 4.176 6 C -0.093 4.093 7 C -0.229 4.229 8 C 0.071 3.929 9 O -0.240 6.240 10 C 0.001 3.999 11 C -0.175 4.175 12 C 0.308 3.692 13 O -0.461 6.461 14 N -0.363 5.363 15 C 0.038 3.962 16 H 0.095 0.905 17 C -0.154 4.154 18 C -0.153 4.153 19 C 0.044 3.956 20 H 0.081 0.919 21 O -0.396 6.396 22 C -0.182 4.182 23 C -0.165 4.165 24 C -0.160 4.160 25 H 0.236 0.764 26 H 0.143 0.857 27 H -0.231 1.231 28 H -0.206 1.206 29 H 0.164 0.836 30 H 0.170 0.830 31 H 0.154 0.846 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.142 0.858 35 H 0.141 0.859 36 H 0.251 0.749 37 H 0.111 0.889 38 H 0.103 0.897 39 H 0.092 0.908 40 H 0.088 0.912 41 H 0.242 0.758 42 H 0.089 0.911 43 H 0.083 0.917 44 H 0.071 0.929 45 H 0.103 0.897 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 1.951 -1.877 1.485 3.088 hybrid contribution -0.548 -0.538 0.428 0.879 sum 1.403 -2.415 1.913 3.385 Atomic orbital electron populations 1.86575 1.18443 1.80491 1.50123 1.25357 0.83517 1.12348 0.98330 0.93853 0.90259 0.71325 0.76381 1.20157 0.97920 0.93255 0.96789 1.21211 1.00879 1.00778 0.94694 1.21247 0.97222 0.93382 0.97457 1.21552 1.04201 0.96564 1.00573 1.19150 0.95773 0.82927 0.95013 1.85954 1.74718 1.20397 1.42880 1.22421 0.99222 0.92885 0.85422 1.21451 1.05326 0.93679 0.97041 1.20553 0.78798 0.82409 0.87405 1.90730 1.42919 1.63566 1.48858 1.46041 1.57144 1.08973 1.24152 1.21007 0.93357 0.94810 0.87051 0.90454 1.21758 1.01073 0.93541 0.99030 1.21498 0.95182 0.99531 0.99056 1.21878 0.96270 0.88181 0.89259 0.91947 1.86476 1.35503 1.62983 1.54684 1.22173 1.00743 0.96360 0.98888 1.21834 0.96213 0.98779 0.99629 1.20342 1.03863 0.94405 0.97413 0.76445 0.85746 1.23068 1.20620 0.83556 0.82973 0.84577 0.91553 0.91686 0.85800 0.85902 0.74928 0.88915 0.89681 0.90803 0.91194 0.75766 0.91121 0.91735 0.92912 0.89717 0.85436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -2.23 12.83 -148.98 -1.91 -4.14 16 2 C -0.09 -0.07 2.80 71.24 0.20 0.13 16 3 Si 0.78 -1.25 29.88 68.60 2.05 0.80 16 4 C -0.08 -0.19 5.35 -19.88 -0.11 -0.29 16 5 C -0.16 -0.03 8.67 22.28 0.19 0.16 16 6 C -0.08 -0.04 10.04 22.26 0.22 0.18 16 7 C -0.21 -0.72 9.04 22.37 0.20 -0.52 16 8 C 0.12 0.68 6.69 22.51 0.15 0.83 16 9 O -0.33 -1.71 10.14 -92.44 -0.94 -2.65 16 10 C 0.08 0.15 4.03 71.98 0.29 0.44 16 11 C -0.14 0.39 6.07 29.85 0.18 0.57 16 12 C 0.52 0.58 7.79 87.66 0.68 1.26 16 13 O -0.58 -5.47 15.64 -3.05 -0.05 -5.52 16 14 N -0.71 2.44 4.23 -442.54 -1.87 0.56 16 15 C 0.14 -0.39 2.78 44.99 0.13 -0.26 16 16 H 0.08 0.08 7.58 -2.39 -0.02 0.06 16 17 C -0.12 0.74 5.61 30.59 0.17 0.91 16 18 C -0.12 0.56 5.40 30.59 0.17 0.72 16 19 C 0.10 -0.38 3.47 30.59 0.11 -0.28 16 20 H 0.06 -0.30 8.14 -2.39 -0.02 -0.32 16 21 O -0.59 0.50 13.32 -148.98 -1.98 -1.49 16 22 C -0.14 0.54 5.39 30.59 0.16 0.71 16 23 C -0.13 0.30 5.60 30.59 0.17 0.47 16 24 C -0.14 -0.76 9.62 22.36 0.22 -0.55 16 25 H 0.39 -0.63 8.70 -74.06 -0.64 -1.27 16 26 H 0.12 -0.08 7.96 -2.39 -0.02 -0.10 16 27 H -0.30 -1.81 7.11 99.48 0.71 -1.10 16 28 H -0.28 -0.46 7.01 99.48 0.70 0.24 16 29 H 0.15 -0.59 4.84 -2.91 -0.01 -0.60 16 30 H 0.15 -0.66 8.06 -2.91 -0.02 -0.69 16 31 H 0.14 0.26 6.30 -2.91 -0.02 0.25 16 32 H 0.07 0.20 7.62 -2.38 -0.02 0.18 16 33 H 0.06 0.21 7.62 -2.39 -0.02 0.19 16 34 H 0.12 -0.76 8.14 -2.39 -0.02 -0.78 16 35 H 0.12 -0.73 8.14 -2.39 -0.02 -0.75 16 36 H 0.41 -3.14 6.87 -92.70 -0.64 -3.78 16 37 H 0.09 -0.71 8.14 -2.39 -0.02 -0.73 16 38 H 0.08 -0.60 8.14 -2.39 -0.02 -0.62 16 39 H 0.07 -0.28 8.14 -2.38 -0.02 -0.30 16 40 H 0.07 -0.36 6.51 -2.39 -0.02 -0.38 16 41 H 0.39 -3.05 9.08 -74.06 -0.67 -3.72 16 42 H 0.07 -0.31 8.14 -2.39 -0.02 -0.33 16 43 H 0.06 -0.15 7.60 -2.39 -0.02 -0.17 16 44 H 0.05 0.12 8.14 -2.39 -0.02 0.10 16 45 H 0.08 -0.35 8.14 -2.39 -0.02 -0.37 16 46 H 0.13 0.73 8.06 -2.91 -0.02 0.70 16 Total: 0.00 -19.77 368.57 -2.48 -22.25 By element: Atomic # 1 Polarization: -13.39 SS G_CDS: -0.91 Total: -14.30 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: 3.14 Total: 4.49 kcal Atomic # 7 Polarization: 2.44 SS G_CDS: -1.87 Total: 0.56 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: -4.88 Total: -13.80 kcal Atomic # 14 Polarization: -1.25 SS G_CDS: 2.05 Total: 0.80 kcal Total: -19.77 -2.48 -22.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12892148_4549614.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.357 kcal (2) G-P(sol) polarization free energy of solvation -19.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds