Wall clock time and date at job start Sat Mar 6 2021 17:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86301 * 109.47515 * 2 1 4 4 C 1.50705 * 109.47226 * 239.99763 * 2 1 3 5 5 C 1.38241 * 119.97265 * 120.02069 * 4 2 1 6 6 C 1.38288 * 120.11377 * 179.97438 * 5 4 2 7 7 C 1.38131 * 120.05356 * 359.77436 * 6 5 4 8 8 C 1.38752 * 119.93946 * 0.50221 * 7 6 5 9 9 O 1.35906 * 120.05306 * 179.74630 * 8 7 6 10 10 C 1.42894 * 116.99793 * 359.72616 * 9 8 7 11 11 C 1.53006 * 109.47316 * 180.02562 * 10 9 8 12 12 C 1.53000 * 109.47153 * 180.02562 * 11 10 9 13 13 C 1.50706 * 109.46655 * 179.97438 * 12 11 10 14 14 O 1.21277 * 119.99934 * 359.97438 * 13 12 11 15 15 N 1.34775 * 119.99541 * 180.02562 * 13 12 11 16 16 C 1.46506 * 119.99531 * 179.97438 * 15 13 12 17 17 H 1.08993 * 109.47068 * 325.00127 * 16 15 13 18 18 C 1.52997 * 109.46949 * 85.00076 * 16 15 13 19 19 C 1.53005 * 109.47452 * 59.99848 * 18 16 15 20 20 C 1.52999 * 109.47159 * 59.99536 * 19 18 16 21 21 H 1.09002 * 109.46716 * 60.00455 * 20 19 18 22 22 O 1.42895 * 109.47162 * 179.97438 * 20 19 18 23 23 C 1.52997 * 109.47317 * 300.00546 * 20 19 18 24 24 C 1.53000 * 109.47060 * 59.99960 * 23 20 19 25 25 C 1.38170 * 119.96776 * 300.00400 * 4 2 1 26 26 H 0.96698 * 113.99595 * 59.99587 * 1 2 3 27 27 H 1.09005 * 109.47197 * 120.00348 * 2 1 3 28 28 H 1.48503 * 109.99842 * 59.99684 * 3 2 1 29 29 H 1.48497 * 109.99929 * 181.31896 * 3 2 1 30 30 H 1.08000 * 119.94235 * 359.97438 * 5 4 2 31 31 H 1.07991 * 119.97397 * 180.02562 * 6 5 4 32 32 H 1.07992 * 120.03018 * 180.27483 * 7 6 5 33 33 H 1.08994 * 109.47546 * 60.00270 * 10 9 8 34 34 H 1.09003 * 109.47666 * 299.99827 * 10 9 8 35 35 H 1.08994 * 109.46884 * 59.99507 * 11 10 9 36 36 H 1.09003 * 109.46319 * 300.00294 * 11 10 9 37 37 H 1.08991 * 109.47114 * 60.00232 * 12 11 10 38 38 H 1.08993 * 109.47105 * 299.99255 * 12 11 10 39 39 H 0.97000 * 120.00190 * 359.97438 * 15 13 12 40 40 H 1.09002 * 109.47153 * 179.97438 * 18 16 15 41 41 H 1.09001 * 109.47289 * 299.99924 * 18 16 15 42 42 H 1.09000 * 109.47360 * 180.02562 * 19 18 16 43 43 H 1.09002 * 109.46935 * 300.00125 * 19 18 16 44 44 H 0.96698 * 114.00355 * 300.00783 * 22 20 19 45 45 H 1.09002 * 109.47153 * 299.99641 * 23 20 19 46 46 H 1.09001 * 109.46832 * 179.97438 * 23 20 19 47 47 H 1.08992 * 109.47399 * 59.99823 * 24 23 20 48 48 H 1.09004 * 109.46724 * 180.02562 * 24 23 20 49 49 H 1.07996 * 120.03107 * 359.97438 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0502 1.7564 0.0000 4 6 1.9314 -0.7105 -1.2305 5 6 2.7265 -0.0383 -2.1399 6 6 3.1895 -0.6875 -3.2697 7 6 2.8622 -2.0113 -3.4898 8 6 2.0596 -2.6865 -2.5814 9 8 1.7319 -3.9875 -2.7984 10 6 2.2438 -4.5961 -3.9855 11 6 1.7724 -6.0500 -4.0575 12 6 2.3211 -6.7018 -5.3283 13 6 1.8572 -8.1339 -5.3987 14 8 1.1572 -8.5885 -4.5188 15 7 2.2212 -8.9097 -6.4389 16 6 1.7707 -10.3021 -6.5071 17 1 1.7280 -10.7198 -5.5013 18 6 0.3796 -10.3575 -7.1417 19 6 0.4394 -9.7711 -8.5537 20 6 1.4198 -10.5833 -9.4021 21 1 1.0846 -11.6193 -9.4529 22 8 1.4752 -10.0360 -10.7210 23 6 2.8109 -10.5279 -8.7675 24 6 2.7510 -11.1144 -7.3556 25 6 1.5972 -2.0333 -1.4484 26 1 -0.3932 0.4418 -0.7650 27 1 1.7924 -0.5139 0.8900 28 1 1.5616 2.4679 1.2085 29 1 3.5347 1.7701 -0.0321 30 1 2.9865 0.9957 -1.9677 31 1 3.8108 -0.1603 -3.9784 32 1 3.2277 -2.5192 -4.3700 33 1 3.3333 -4.5676 -3.9678 34 1 1.8804 -4.0532 -4.8581 35 1 0.6830 -6.0781 -4.0754 36 1 2.1356 -6.5931 -3.1850 37 1 3.4105 -6.6736 -5.3098 38 1 1.9582 -6.1587 -6.2009 39 1 2.7814 -8.5462 -7.1424 40 1 0.0446 -11.3935 -7.1929 41 1 -0.3189 -9.7788 -6.5373 42 1 -0.5517 -9.8102 -9.0056 43 1 0.7746 -8.7352 -8.5029 44 1 0.6264 -10.0392 -11.1841 45 1 3.1461 -9.4919 -8.7168 46 1 3.5092 -11.1069 -9.3718 47 1 2.4159 -12.1502 -7.4064 48 1 3.7420 -11.0744 -6.9034 49 1 0.9766 -2.5582 -0.7374 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_12892148_4549616.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 17:55:34 Heat of formation + Delta-G solvation = -144.394529 kcal Electronic energy + Delta-G solvation = -28250.053110 eV Core-core repulsion = 24143.159640 eV Total energy + Delta-G solvation = -4106.893469 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 336.182 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.44004 -41.19729 -39.66808 -39.11509 -37.28761 -37.06418 -34.91354 -34.01138 -32.43480 -32.03213 -31.27778 -30.08007 -28.13718 -26.77623 -24.00543 -23.91652 -23.63001 -23.09463 -21.94595 -21.61906 -20.29315 -19.19780 -18.39083 -18.30329 -17.77399 -17.52859 -17.18423 -17.00703 -16.82858 -16.65329 -16.18299 -16.04213 -15.61669 -15.34302 -15.15879 -14.96645 -14.71787 -14.41990 -14.27932 -14.12849 -14.12658 -14.03868 -13.42477 -13.34972 -13.32313 -13.04083 -12.95210 -12.73572 -12.41853 -12.32962 -12.32051 -12.23450 -11.89951 -11.85124 -11.67037 -11.58676 -11.35085 -10.88230 -10.85890 -10.47798 -10.09951 -9.88707 -9.20826 -5.02014 0.23520 0.43872 1.29281 1.62608 1.64811 1.87803 1.99380 2.34401 2.70528 3.05079 3.46339 3.49499 3.55818 3.58153 3.65655 3.77761 3.80452 3.87247 3.91647 3.93183 4.02108 4.05351 4.14713 4.16726 4.21394 4.22164 4.26397 4.26517 4.37920 4.40420 4.42901 4.49896 4.56516 4.65433 4.69310 4.87801 4.93215 4.93975 4.95219 4.99504 4.99971 5.11305 5.15310 5.19330 5.30068 5.39259 5.46043 5.46503 5.72058 6.42386 6.43886 6.58808 6.59000 7.20064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.538 6.538 2 C -0.070 4.070 3 Si 0.694 3.306 4 C -0.081 4.081 5 C -0.157 4.157 6 C -0.073 4.073 7 C -0.206 4.206 8 C 0.132 3.868 9 O -0.311 6.311 10 C 0.060 3.940 11 C -0.105 4.105 12 C -0.139 4.139 13 C 0.515 3.485 14 O -0.534 6.534 15 N -0.726 5.726 16 C 0.143 3.857 17 H 0.093 0.907 18 C -0.130 4.130 19 C -0.150 4.150 20 C 0.103 3.897 21 H 0.057 0.943 22 O -0.569 6.569 23 C -0.114 4.114 24 C -0.126 4.126 25 C -0.126 4.126 26 H 0.379 0.621 27 H 0.115 0.885 28 H -0.255 1.255 29 H -0.258 1.258 30 H 0.128 0.872 31 H 0.130 0.870 32 H 0.129 0.871 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.400 0.600 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.066 0.934 43 H 0.070 0.930 44 H 0.380 0.620 45 H 0.067 0.933 46 H 0.075 0.925 47 H 0.083 0.917 48 H 0.078 0.922 49 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.831 0.754 -6.391 6.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.344 6.344 2 C -0.181 4.181 3 Si 0.596 3.404 4 C -0.081 4.081 5 C -0.175 4.175 6 C -0.091 4.091 7 C -0.224 4.224 8 C 0.087 3.913 9 O -0.225 6.225 10 C -0.016 4.016 11 C -0.142 4.142 12 C -0.179 4.179 13 C 0.301 3.699 14 O -0.411 6.411 15 N -0.379 5.379 16 C 0.038 3.962 17 H 0.111 0.889 18 C -0.168 4.168 19 C -0.188 4.188 20 C 0.044 3.956 21 H 0.075 0.925 22 O -0.375 6.375 23 C -0.152 4.152 24 C -0.164 4.164 25 C -0.145 4.145 26 H 0.227 0.773 27 H 0.133 0.867 28 H -0.180 1.180 29 H -0.183 1.183 30 H 0.145 0.855 31 H 0.148 0.852 32 H 0.147 0.853 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.116 0.884 38 H 0.116 0.884 39 H 0.236 0.764 40 H 0.093 0.907 41 H 0.091 0.909 42 H 0.084 0.916 43 H 0.089 0.911 44 H 0.227 0.773 45 H 0.086 0.914 46 H 0.094 0.906 47 H 0.102 0.898 48 H 0.097 0.903 49 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 2.410 0.634 -4.488 5.134 hybrid contribution -0.063 -0.540 -0.667 0.860 sum 2.347 0.094 -5.155 5.665 Atomic orbital electron populations 1.86516 1.16925 1.81715 1.49219 1.25124 0.85385 1.10244 0.97346 0.94619 0.80912 0.77842 0.87057 1.20146 0.97483 0.93915 0.96575 1.20921 1.01102 0.99833 0.95618 1.20911 0.97834 0.93723 0.96675 1.21314 1.03465 0.96499 1.01145 1.19031 0.94358 0.83486 0.94431 1.86088 1.70900 1.22403 1.43093 1.22827 0.98562 0.93946 0.86232 1.21224 1.02996 0.92253 0.97769 1.21537 1.03024 0.93085 1.00245 1.20565 0.80006 0.88006 0.81332 1.90747 1.37176 1.74784 1.38346 1.46159 1.53954 1.12553 1.25242 1.20981 0.93420 0.81356 1.00412 0.88932 1.21886 0.97196 1.02071 0.95671 1.22241 0.99767 1.00827 0.95963 1.21836 0.95692 0.95919 0.82142 0.92525 1.86504 1.37286 1.85634 1.28092 1.21477 0.96165 1.02093 0.95440 1.21820 1.00099 1.00060 0.94391 1.20273 1.03117 0.93993 0.97105 0.77323 0.86738 1.17986 1.18307 0.85454 0.85222 0.85270 0.91807 0.91751 0.89801 0.89824 0.88414 0.88428 0.76424 0.90679 0.90855 0.91561 0.91131 0.77271 0.91391 0.90586 0.89837 0.90336 0.84793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.53 12.77 -35.23 -0.45 -0.98 16 2 C -0.07 -0.04 2.82 36.01 0.10 0.07 16 3 Si 0.69 -0.51 29.79 -169.99 -5.06 -5.57 16 4 C -0.08 -0.09 5.39 -104.64 -0.56 -0.65 16 5 C -0.16 -0.01 8.67 -39.56 -0.34 -0.35 16 6 C -0.07 0.02 10.04 -39.60 -0.40 -0.38 16 7 C -0.21 -0.09 9.04 -39.43 -0.36 -0.45 16 8 C 0.13 0.30 6.69 -39.22 -0.26 0.04 16 9 O -0.31 -0.80 10.14 -19.45 -0.20 -1.00 16 10 C 0.06 -0.05 4.74 37.16 0.18 0.13 16 11 C -0.10 0.03 4.87 -26.73 -0.13 -0.10 16 12 C -0.14 0.35 5.70 -27.88 -0.16 0.19 16 13 C 0.51 0.22 7.79 -10.98 -0.09 0.13 16 14 O -0.53 -2.58 15.64 5.56 0.09 -2.49 16 15 N -0.73 1.22 4.23 -53.80 -0.23 1.00 16 16 C 0.14 -0.17 2.78 -67.93 -0.19 -0.36 16 17 H 0.09 0.05 7.58 -51.93 -0.39 -0.34 16 18 C -0.13 0.13 5.60 -26.73 -0.15 -0.01 16 19 C -0.15 0.26 5.39 -26.73 -0.14 0.11 16 20 C 0.10 -0.16 3.47 -26.73 -0.09 -0.25 16 21 H 0.06 -0.11 8.14 -51.93 -0.42 -0.53 16 22 O -0.57 0.14 13.32 -35.23 -0.47 -0.33 16 23 C -0.11 0.24 5.40 -26.73 -0.14 0.09 16 24 C -0.13 0.34 5.61 -26.73 -0.15 0.19 16 25 C -0.13 -0.31 9.55 -39.43 -0.38 -0.69 16 26 H 0.38 -1.12 8.70 45.56 0.40 -0.72 16 27 H 0.12 0.11 7.96 -51.93 -0.41 -0.30 16 28 H -0.25 -0.63 7.11 56.52 0.40 -0.23 16 29 H -0.26 -0.39 7.11 56.52 0.40 0.02 16 30 H 0.13 -0.24 4.87 -52.49 -0.26 -0.49 16 31 H 0.13 -0.33 8.06 -52.49 -0.42 -0.75 16 32 H 0.13 -0.21 6.30 -52.49 -0.33 -0.54 16 33 H 0.06 -0.13 7.65 -51.93 -0.40 -0.53 16 34 H 0.06 -0.14 7.67 -51.93 -0.40 -0.54 16 35 H 0.08 0.11 8.10 -51.93 -0.42 -0.31 16 36 H 0.08 0.11 8.10 -51.93 -0.42 -0.31 16 37 H 0.10 -0.43 8.14 -51.93 -0.42 -0.85 16 38 H 0.10 -0.42 8.14 -51.93 -0.42 -0.85 16 39 H 0.40 -1.47 6.87 -40.82 -0.28 -1.75 16 40 H 0.07 -0.13 8.14 -51.93 -0.42 -0.55 16 41 H 0.07 0.07 8.14 -51.93 -0.42 -0.35 16 42 H 0.07 -0.13 8.14 -51.93 -0.42 -0.55 16 43 H 0.07 -0.08 7.60 -51.93 -0.39 -0.47 16 44 H 0.38 -1.42 9.08 45.56 0.41 -1.01 16 45 H 0.07 -0.16 6.51 -51.93 -0.34 -0.50 16 46 H 0.08 -0.12 8.14 -51.93 -0.42 -0.54 16 47 H 0.08 -0.26 8.14 -51.93 -0.42 -0.69 16 48 H 0.08 -0.23 8.14 -51.93 -0.42 -0.66 16 49 H 0.13 0.38 8.06 -52.49 -0.42 -0.04 16 LS Contribution 390.04 15.07 5.88 5.88 Total: 0.00 -9.39 390.04 -10.79 -20.18 By element: Atomic # 1 Polarization: -7.30 SS G_CDS: -7.08 Total: -14.38 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: -3.27 Total: -2.29 kcal Atomic # 7 Polarization: 1.22 SS G_CDS: -0.23 Total: 1.00 kcal Atomic # 8 Polarization: -3.78 SS G_CDS: -1.03 Total: -4.80 kcal Atomic # 14 Polarization: -0.51 SS G_CDS: -5.06 Total: -5.57 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -9.39 -10.79 -20.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12892148_4549616.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.214 kcal (2) G-P(sol) polarization free energy of solvation -9.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds