Wall clock time and date at job start Sat Mar 6 2021 17:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86301 * 109.47515 * 2 1 4 4 C 1.50705 * 109.47226 * 239.99763 * 2 1 3 5 5 C 1.38241 * 119.97265 * 120.02069 * 4 2 1 6 6 C 1.38288 * 120.11377 * 179.97438 * 5 4 2 7 7 C 1.38131 * 120.05356 * 359.77436 * 6 5 4 8 8 C 1.38752 * 119.93946 * 0.50221 * 7 6 5 9 9 O 1.35906 * 120.05306 * 179.74630 * 8 7 6 10 10 C 1.42894 * 116.99793 * 359.72616 * 9 8 7 11 11 C 1.53006 * 109.47316 * 180.02562 * 10 9 8 12 12 C 1.53000 * 109.47153 * 180.02562 * 11 10 9 13 13 C 1.50706 * 109.46655 * 179.97438 * 12 11 10 14 14 O 1.21277 * 119.99934 * 359.97438 * 13 12 11 15 15 N 1.34775 * 119.99541 * 180.02562 * 13 12 11 16 16 C 1.46506 * 119.99531 * 179.97438 * 15 13 12 17 17 H 1.08993 * 109.47068 * 325.00127 * 16 15 13 18 18 C 1.52997 * 109.46949 * 85.00076 * 16 15 13 19 19 C 1.53005 * 109.47452 * 59.99848 * 18 16 15 20 20 C 1.52999 * 109.47159 * 59.99536 * 19 18 16 21 21 H 1.09002 * 109.46716 * 60.00455 * 20 19 18 22 22 O 1.42895 * 109.47162 * 179.97438 * 20 19 18 23 23 C 1.52997 * 109.47317 * 300.00546 * 20 19 18 24 24 C 1.53000 * 109.47060 * 59.99960 * 23 20 19 25 25 C 1.38170 * 119.96776 * 300.00400 * 4 2 1 26 26 H 0.96698 * 113.99595 * 59.99587 * 1 2 3 27 27 H 1.09005 * 109.47197 * 120.00348 * 2 1 3 28 28 H 1.48503 * 109.99842 * 59.99684 * 3 2 1 29 29 H 1.48497 * 109.99929 * 181.31896 * 3 2 1 30 30 H 1.08000 * 119.94235 * 359.97438 * 5 4 2 31 31 H 1.07991 * 119.97397 * 180.02562 * 6 5 4 32 32 H 1.07992 * 120.03018 * 180.27483 * 7 6 5 33 33 H 1.08994 * 109.47546 * 60.00270 * 10 9 8 34 34 H 1.09003 * 109.47666 * 299.99827 * 10 9 8 35 35 H 1.08994 * 109.46884 * 59.99507 * 11 10 9 36 36 H 1.09003 * 109.46319 * 300.00294 * 11 10 9 37 37 H 1.08991 * 109.47114 * 60.00232 * 12 11 10 38 38 H 1.08993 * 109.47105 * 299.99255 * 12 11 10 39 39 H 0.97000 * 120.00190 * 359.97438 * 15 13 12 40 40 H 1.09002 * 109.47153 * 179.97438 * 18 16 15 41 41 H 1.09001 * 109.47289 * 299.99924 * 18 16 15 42 42 H 1.09000 * 109.47360 * 180.02562 * 19 18 16 43 43 H 1.09002 * 109.46935 * 300.00125 * 19 18 16 44 44 H 0.96698 * 114.00355 * 300.00783 * 22 20 19 45 45 H 1.09002 * 109.47153 * 299.99641 * 23 20 19 46 46 H 1.09001 * 109.46832 * 179.97438 * 23 20 19 47 47 H 1.08992 * 109.47399 * 59.99823 * 24 23 20 48 48 H 1.09004 * 109.46724 * 180.02562 * 24 23 20 49 49 H 1.07996 * 120.03107 * 359.97438 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0502 1.7564 0.0000 4 6 1.9314 -0.7105 -1.2305 5 6 2.7265 -0.0383 -2.1399 6 6 3.1895 -0.6875 -3.2697 7 6 2.8622 -2.0113 -3.4898 8 6 2.0596 -2.6865 -2.5814 9 8 1.7319 -3.9875 -2.7984 10 6 2.2438 -4.5961 -3.9855 11 6 1.7724 -6.0500 -4.0575 12 6 2.3211 -6.7018 -5.3283 13 6 1.8572 -8.1339 -5.3987 14 8 1.1572 -8.5885 -4.5188 15 7 2.2212 -8.9097 -6.4389 16 6 1.7707 -10.3021 -6.5071 17 1 1.7280 -10.7198 -5.5013 18 6 0.3796 -10.3575 -7.1417 19 6 0.4394 -9.7711 -8.5537 20 6 1.4198 -10.5833 -9.4021 21 1 1.0846 -11.6193 -9.4529 22 8 1.4752 -10.0360 -10.7210 23 6 2.8109 -10.5279 -8.7675 24 6 2.7510 -11.1144 -7.3556 25 6 1.5972 -2.0333 -1.4484 26 1 -0.3932 0.4418 -0.7650 27 1 1.7924 -0.5139 0.8900 28 1 1.5616 2.4679 1.2085 29 1 3.5347 1.7701 -0.0321 30 1 2.9865 0.9957 -1.9677 31 1 3.8108 -0.1603 -3.9784 32 1 3.2277 -2.5192 -4.3700 33 1 3.3333 -4.5676 -3.9678 34 1 1.8804 -4.0532 -4.8581 35 1 0.6830 -6.0781 -4.0754 36 1 2.1356 -6.5931 -3.1850 37 1 3.4105 -6.6736 -5.3098 38 1 1.9582 -6.1587 -6.2009 39 1 2.7814 -8.5462 -7.1424 40 1 0.0446 -11.3935 -7.1929 41 1 -0.3189 -9.7788 -6.5373 42 1 -0.5517 -9.8102 -9.0056 43 1 0.7746 -8.7352 -8.5029 44 1 0.6264 -10.0392 -11.1841 45 1 3.1461 -9.4919 -8.7168 46 1 3.5092 -11.1069 -9.3718 47 1 2.4159 -12.1502 -7.4064 48 1 3.7420 -11.0744 -6.9034 49 1 0.9766 -2.5582 -0.7374 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12892148_4549616.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 17:55:33 Heat of formation + Delta-G solvation = -146.291338 kcal Electronic energy + Delta-G solvation = -28250.135362 eV Core-core repulsion = 24143.159640 eV Total energy + Delta-G solvation = -4106.975721 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 336.182 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.43108 -41.21141 -39.63706 -39.15055 -37.31384 -37.01209 -34.91110 -33.97523 -32.44924 -31.90752 -31.28596 -30.01018 -28.05777 -26.80191 -23.97573 -23.78492 -23.64353 -23.01587 -21.94343 -21.56513 -20.22835 -19.22048 -18.34123 -18.21360 -17.81984 -17.49117 -17.17838 -16.95047 -16.85371 -16.62636 -16.18459 -16.04514 -15.54450 -15.35701 -15.09747 -14.92953 -14.71202 -14.41023 -14.28181 -14.18723 -14.10927 -13.95766 -13.30325 -13.29270 -13.23454 -13.04926 -12.83415 -12.74061 -12.34411 -12.26301 -12.23594 -12.17507 -11.97732 -11.76876 -11.62966 -11.59858 -11.21848 -10.95028 -10.77728 -10.51102 -10.08709 -9.91581 -9.24906 -4.99134 0.21292 0.40478 1.29573 1.61526 1.64704 1.90790 1.99721 2.39439 2.68364 3.23201 3.49523 3.58657 3.65903 3.68350 3.69158 3.84669 3.86562 3.96749 4.01588 4.04163 4.10789 4.16768 4.22229 4.24799 4.33127 4.35674 4.39366 4.41117 4.42110 4.48547 4.52488 4.58711 4.63540 4.67878 4.84850 4.98218 4.98763 4.99833 5.02049 5.08505 5.12585 5.15036 5.26627 5.28555 5.30361 5.38494 5.45070 5.52206 5.74546 6.42241 6.52102 6.74099 6.84355 7.24190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.558 6.558 2 C -0.084 4.084 3 Si 0.794 3.206 4 C -0.085 4.085 5 C -0.160 4.160 6 C -0.072 4.072 7 C -0.206 4.206 8 C 0.116 3.884 9 O -0.339 6.339 10 C 0.058 3.942 11 C -0.100 4.100 12 C -0.129 4.129 13 C 0.509 3.491 14 O -0.588 6.588 15 N -0.713 5.713 16 C 0.141 3.859 17 H 0.071 0.929 18 C -0.126 4.126 19 C -0.142 4.142 20 C 0.103 3.897 21 H 0.061 0.939 22 O -0.587 6.587 23 C -0.113 4.113 24 C -0.116 4.116 25 C -0.153 4.153 26 H 0.395 0.605 27 H 0.102 0.898 28 H -0.300 1.300 29 H -0.281 1.281 30 H 0.149 0.851 31 H 0.160 0.840 32 H 0.153 0.847 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.126 0.874 38 H 0.125 0.875 39 H 0.413 0.587 40 H 0.081 0.919 41 H 0.048 0.952 42 H 0.069 0.931 43 H 0.066 0.934 44 H 0.393 0.607 45 H 0.072 0.928 46 H 0.074 0.926 47 H 0.089 0.911 48 H 0.085 0.915 49 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.426 1.833 -8.744 9.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.366 6.366 2 C -0.193 4.193 3 Si 0.699 3.301 4 C -0.085 4.085 5 C -0.178 4.178 6 C -0.090 4.090 7 C -0.225 4.225 8 C 0.070 3.930 9 O -0.254 6.254 10 C -0.016 4.016 11 C -0.138 4.138 12 C -0.169 4.169 13 C 0.297 3.703 14 O -0.468 6.468 15 N -0.366 5.366 16 C 0.036 3.964 17 H 0.089 0.911 18 C -0.165 4.165 19 C -0.180 4.180 20 C 0.045 3.955 21 H 0.079 0.921 22 O -0.395 6.395 23 C -0.151 4.151 24 C -0.154 4.154 25 C -0.171 4.171 26 H 0.245 0.755 27 H 0.119 0.881 28 H -0.229 1.229 29 H -0.208 1.208 30 H 0.166 0.834 31 H 0.177 0.823 32 H 0.171 0.829 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.144 0.856 38 H 0.143 0.857 39 H 0.251 0.749 40 H 0.100 0.900 41 H 0.067 0.933 42 H 0.088 0.912 43 H 0.085 0.915 44 H 0.242 0.758 45 H 0.091 0.909 46 H 0.093 0.907 47 H 0.108 0.892 48 H 0.103 0.897 49 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 4.003 1.694 -6.907 8.161 hybrid contribution -0.599 -0.923 0.084 1.104 sum 3.403 0.771 -6.823 7.663 Atomic orbital electron populations 1.86471 1.17349 1.82292 1.50445 1.25402 0.85312 1.11763 0.96850 0.93499 0.77732 0.74338 0.84553 1.20220 0.97824 0.93451 0.97029 1.21191 1.00414 1.00761 0.95407 1.21316 0.97343 0.93510 0.96803 1.21603 1.02631 0.96904 1.01312 1.19213 0.95224 0.83566 0.94956 1.86054 1.71670 1.22912 1.44719 1.22987 0.99599 0.93160 0.85874 1.21138 1.01545 0.92966 0.98200 1.21542 1.04580 0.90855 0.99882 1.21142 0.79162 0.89208 0.80826 1.90729 1.39715 1.75979 1.40372 1.46079 1.53317 1.12233 1.24958 1.20953 0.93985 0.81798 0.99615 0.91079 1.21829 0.96731 1.02136 0.95805 1.22163 1.00075 1.00490 0.95282 1.21864 0.95917 0.95988 0.81779 0.92141 1.86468 1.38669 1.85777 1.28602 1.21484 0.95842 1.02387 0.95390 1.21749 0.99856 0.99986 0.93773 1.20317 1.04233 0.94953 0.97639 0.75464 0.88081 1.22874 1.20788 0.83432 0.82264 0.82939 0.89943 0.89784 0.92186 0.92229 0.85561 0.85686 0.74899 0.90012 0.93267 0.91219 0.91497 0.75765 0.90930 0.90743 0.89198 0.89658 0.86743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.82 12.77 -148.98 -1.90 -3.72 16 2 C -0.08 -0.18 2.82 71.24 0.20 0.02 16 3 Si 0.79 -1.30 29.79 68.60 2.04 0.74 16 4 C -0.08 -0.25 5.39 -19.88 -0.11 -0.35 16 5 C -0.16 0.17 8.67 22.28 0.19 0.36 16 6 C -0.07 0.18 10.04 22.26 0.22 0.40 16 7 C -0.21 0.08 9.04 22.37 0.20 0.28 16 8 C 0.12 0.62 6.69 22.51 0.15 0.77 16 9 O -0.34 -2.25 10.14 -92.50 -0.94 -3.18 16 10 C 0.06 -0.10 4.74 71.98 0.34 0.24 16 11 C -0.10 -0.06 4.87 30.60 0.15 0.08 16 12 C -0.13 0.74 5.70 29.85 0.17 0.91 16 13 C 0.51 0.85 7.79 87.66 0.68 1.53 16 14 O -0.59 -7.19 15.64 -3.02 -0.05 -7.23 16 15 N -0.71 2.36 4.23 -442.53 -1.87 0.49 16 16 C 0.14 -0.24 2.78 44.99 0.13 -0.11 16 17 H 0.07 0.21 7.58 -2.39 -0.02 0.20 16 18 C -0.13 0.15 5.60 30.60 0.17 0.32 16 19 C -0.14 0.50 5.39 30.60 0.16 0.67 16 20 C 0.10 -0.39 3.47 30.59 0.11 -0.28 16 21 H 0.06 -0.27 8.14 -2.39 -0.02 -0.29 16 22 O -0.59 0.78 13.32 -148.98 -1.98 -1.20 16 23 C -0.11 0.58 5.40 30.59 0.17 0.74 16 24 C -0.12 0.68 5.61 30.60 0.17 0.86 16 25 C -0.15 -1.06 9.55 22.37 0.21 -0.84 16 26 H 0.40 -2.07 8.70 -74.06 -0.64 -2.72 16 27 H 0.10 0.41 7.96 -2.38 -0.02 0.39 16 28 H -0.30 -1.78 7.11 99.48 0.71 -1.07 16 29 H -0.28 -0.62 7.11 99.48 0.71 0.09 16 30 H 0.15 -0.84 4.87 -2.91 -0.01 -0.86 16 31 H 0.16 -1.37 8.06 -2.92 -0.02 -1.39 16 32 H 0.15 -0.89 6.30 -2.91 -0.02 -0.91 16 33 H 0.08 -0.46 7.65 -2.39 -0.02 -0.48 16 34 H 0.08 -0.49 7.67 -2.39 -0.02 -0.51 16 35 H 0.06 0.31 8.10 -2.39 -0.02 0.29 16 36 H 0.06 0.31 8.10 -2.39 -0.02 0.29 16 37 H 0.13 -1.40 8.14 -2.39 -0.02 -1.42 16 38 H 0.13 -1.35 8.14 -2.39 -0.02 -1.37 16 39 H 0.41 -3.50 6.87 -92.71 -0.64 -4.14 16 40 H 0.08 -0.22 8.14 -2.39 -0.02 -0.24 16 41 H 0.05 0.20 8.14 -2.39 -0.02 0.18 16 42 H 0.07 -0.28 8.14 -2.39 -0.02 -0.30 16 43 H 0.07 -0.18 7.60 -2.39 -0.02 -0.19 16 44 H 0.39 -3.20 9.08 -74.06 -0.67 -3.88 16 45 H 0.07 -0.44 6.51 -2.39 -0.02 -0.46 16 46 H 0.07 -0.31 8.14 -2.39 -0.02 -0.33 16 47 H 0.09 -0.62 8.14 -2.39 -0.02 -0.63 16 48 H 0.08 -0.58 8.14 -2.39 -0.02 -0.60 16 49 H 0.11 1.09 8.06 -2.91 -0.02 1.07 16 Total: 0.00 -25.48 390.04 -2.32 -27.79 By element: Atomic # 1 Polarization: -18.34 SS G_CDS: -0.94 Total: -19.28 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: 3.32 Total: 5.59 kcal Atomic # 7 Polarization: 2.36 SS G_CDS: -1.87 Total: 0.49 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: -4.87 Total: -15.34 kcal Atomic # 14 Polarization: -1.30 SS G_CDS: 2.04 Total: 0.74 kcal Total: -25.48 -2.32 -27.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12892148_4549616.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.497 kcal (2) G-P(sol) polarization free energy of solvation -25.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds