Wall clock time and date at job start Sat Mar 6 2021 17:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86302 * 109.47170 * 2 1 4 4 C 1.50703 * 109.46997 * 240.00207 * 2 1 3 5 5 C 1.38245 * 119.94606 * 120.01664 * 4 2 1 6 6 C 1.38160 * 120.05995 * 179.72533 * 5 4 2 7 7 C 1.38713 * 119.93964 * 0.53026 * 6 5 4 8 8 O 1.35902 * 120.05597 * 179.74820 * 7 6 5 9 9 C 1.42901 * 116.99954 * 359.72269 * 8 7 6 10 10 C 1.50696 * 109.47280 * 179.97438 * 9 8 7 11 11 O 1.21281 * 119.99909 * 0.02562 * 10 9 8 12 12 N 1.34781 * 120.00051 * 179.97438 * 10 9 8 13 13 C 1.46496 * 119.99775 * 180.02562 * 12 10 9 14 14 H 1.08996 * 109.47565 * 325.00106 * 13 12 10 15 15 C 1.53002 * 109.47037 * 85.00675 * 13 12 10 16 16 C 1.53006 * 109.46977 * 179.97438 * 15 13 12 17 17 C 1.52997 * 109.47127 * 299.99541 * 16 15 13 18 18 H 1.09002 * 109.47153 * 180.02562 * 17 16 15 19 19 O 1.42898 * 109.47319 * 300.00438 * 17 16 15 20 20 C 1.53002 * 109.46817 * 60.00361 * 17 16 15 21 21 C 1.52996 * 109.46972 * 299.99733 * 20 17 16 22 22 C 1.38752 * 119.89132 * 359.47329 * 7 6 5 23 23 N 1.47998 * 120.03099 * 180.27046 * 22 7 6 24 24 O 1.21801 * 120.00029 * 179.97438 * 23 22 7 25 25 O 1.21803 * 119.99846 * 0.02562 * 23 22 7 26 26 C 1.38126 * 119.94049 * 0.25459 * 22 7 6 27 27 H 0.96695 * 114.00706 * 59.99731 * 1 2 3 28 28 H 1.08995 * 109.47411 * 120.00661 * 2 1 3 29 29 H 1.48501 * 109.99723 * 60.00452 * 3 2 1 30 30 H 1.48494 * 110.00204 * 181.32163 * 3 2 1 31 31 H 1.08002 * 119.96821 * 359.97438 * 5 4 2 32 32 H 1.08000 * 120.02984 * 180.26120 * 6 5 4 33 33 H 1.09001 * 109.46845 * 60.00257 * 9 8 7 34 34 H 1.09000 * 109.47635 * 300.00440 * 9 8 7 35 35 H 0.96996 * 120.00159 * 0.02562 * 12 10 9 36 36 H 1.09000 * 109.46986 * 299.99564 * 15 13 12 37 37 H 1.08993 * 109.47662 * 59.99787 * 15 13 12 38 38 H 1.08998 * 109.46505 * 179.97438 * 16 15 13 39 39 H 1.08996 * 109.46884 * 60.00293 * 16 15 13 40 40 H 0.96708 * 113.99549 * 300.00230 * 19 17 16 41 41 H 1.08996 * 109.47407 * 60.00219 * 20 17 16 42 42 H 1.09000 * 109.46986 * 179.97438 * 20 17 16 43 43 H 1.09001 * 109.46993 * 180.02562 * 21 20 17 44 44 H 1.09004 * 109.47298 * 300.00176 * 21 20 17 45 45 H 1.08005 * 119.96997 * 180.02562 * 26 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 2.7263 -0.0375 -2.1396 6 6 3.1928 -0.6881 -3.2656 7 6 2.8537 -2.0145 -3.4892 8 8 3.3070 -2.6552 -4.5986 9 6 4.1238 -1.9001 -5.4957 10 6 4.5296 -2.7692 -6.6580 11 8 4.1558 -3.9216 -6.7130 12 7 5.3071 -2.2654 -7.6369 13 6 5.7011 -3.1102 -8.7671 14 1 5.8501 -4.1331 -8.4216 15 6 4.6007 -3.0859 -9.8299 16 6 5.0125 -3.9676 -11.0106 17 6 6.3152 -3.4376 -11.6131 18 1 6.6083 -4.0655 -12.4545 19 8 6.1196 -2.0963 -12.0656 20 6 7.4155 -3.4619 -10.5503 21 6 7.0037 -2.5801 -9.3697 22 6 2.0556 -2.6876 -2.5753 23 7 1.6969 -4.1046 -2.8078 24 8 0.9966 -4.6951 -2.0049 25 8 2.1027 -4.6804 -3.8014 26 6 1.5965 -2.0343 -1.4483 27 1 -0.3934 0.4417 -0.7649 28 1 1.7924 -0.5139 0.8899 29 1 1.5615 2.4678 1.2086 30 1 3.5345 1.7703 -0.0322 31 1 2.9863 0.9965 -1.9674 32 1 3.8173 -0.1633 -3.9734 33 1 5.0153 -1.5548 -4.9721 34 1 3.5623 -1.0409 -5.8626 35 1 5.6058 -1.3437 -7.5931 36 1 3.6726 -3.4631 -9.4006 37 1 4.4518 -2.0630 -10.1755 38 1 4.2284 -3.9506 -11.7675 39 1 5.1616 -4.9907 -10.6654 40 1 5.4345 -2.0055 -12.7421 41 1 7.5648 -4.4849 -10.2051 42 1 8.3437 -3.0846 -10.9796 43 1 7.7879 -2.5971 -8.6127 44 1 6.8545 -1.5570 -9.7149 45 1 0.9755 -2.5579 -0.7364 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12892148_4549638.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 17:55:52 Heat of formation + Delta-G solvation = -128.295806 kcal Electronic energy + Delta-G solvation = -31399.343451 eV Core-core repulsion = 26773.206877 eV Total energy + Delta-G solvation = -4626.136574 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 353.144 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.30454 -41.81684 -41.06181 -39.92058 -39.21722 -37.60324 -37.38823 -36.65032 -34.38814 -33.48217 -32.25983 -31.82956 -30.77493 -28.79150 -27.83304 -26.54300 -24.30069 -23.81742 -23.27784 -22.74339 -21.63479 -20.87446 -20.52172 -19.78517 -19.19917 -18.65028 -18.52919 -18.12642 -17.78213 -17.55070 -17.25785 -17.11136 -16.45394 -16.33212 -16.08715 -15.85975 -15.59498 -15.45430 -15.12083 -14.73523 -14.43142 -14.08150 -14.01284 -13.95614 -13.75614 -13.49301 -13.23832 -13.21741 -13.04139 -12.71791 -12.44812 -12.38007 -12.28717 -12.25821 -12.20014 -12.04479 -11.94878 -11.60803 -11.26246 -11.06548 -10.84700 -10.67407 -10.56862 -10.14231 -9.79730 -4.99700 -1.32494 -0.25203 0.14663 0.34390 1.20248 1.27100 1.45267 1.63971 2.01769 2.04749 2.31826 3.11034 3.23266 3.37630 3.40687 3.49888 3.57197 3.70405 3.71937 3.75034 3.79366 3.91578 3.99607 4.00408 4.06976 4.22739 4.28257 4.35298 4.38834 4.45697 4.50373 4.51491 4.62506 4.64937 4.83022 4.90002 4.97386 5.05407 5.06541 5.14437 5.15000 5.18281 5.26083 5.34113 5.47914 5.75053 6.40704 6.45600 6.73230 6.90573 7.15470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.558 6.558 2 C -0.082 4.082 3 Si 0.800 3.200 4 C -0.150 4.150 5 C -0.004 4.004 6 C -0.189 4.189 7 C 0.193 3.807 8 O -0.292 6.292 9 C 0.025 3.975 10 C 0.507 3.493 11 O -0.565 6.565 12 N -0.705 5.705 13 C 0.148 3.852 14 H 0.062 0.938 15 C -0.120 4.120 16 C -0.150 4.150 17 C 0.105 3.895 18 H 0.064 0.936 19 O -0.576 6.576 20 C -0.115 4.115 21 C -0.112 4.112 22 C -0.105 4.105 23 N 0.035 4.965 24 O -0.202 6.202 25 O -0.175 6.175 26 C -0.003 4.003 27 H 0.398 0.602 28 H 0.110 0.890 29 H -0.306 1.306 30 H -0.264 1.264 31 H 0.189 0.811 32 H 0.206 0.794 33 H 0.143 0.857 34 H 0.146 0.854 35 H 0.421 0.579 36 H 0.041 0.959 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.067 0.933 40 H 0.391 0.609 41 H 0.080 0.920 42 H 0.078 0.922 43 H 0.077 0.923 44 H 0.083 0.917 45 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.057 13.933 -4.589 15.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.366 6.366 2 C -0.190 4.190 3 Si 0.703 3.297 4 C -0.151 4.151 5 C -0.022 4.022 6 C -0.207 4.207 7 C 0.143 3.857 8 O -0.202 6.202 9 C -0.052 4.052 10 C 0.293 3.707 11 O -0.443 6.443 12 N -0.359 5.359 13 C 0.044 3.956 14 H 0.081 0.919 15 C -0.158 4.158 16 C -0.188 4.188 17 C 0.047 3.953 18 H 0.082 0.918 19 O -0.384 6.384 20 C -0.153 4.153 21 C -0.150 4.150 22 C -0.190 4.190 23 N 0.544 4.456 24 O -0.410 6.410 25 O -0.389 6.389 26 C -0.022 4.022 27 H 0.248 0.752 28 H 0.127 0.873 29 H -0.234 1.234 30 H -0.190 1.190 31 H 0.206 0.794 32 H 0.223 0.777 33 H 0.160 0.840 34 H 0.163 0.837 35 H 0.259 0.741 36 H 0.059 0.941 37 H 0.098 0.902 38 H 0.095 0.905 39 H 0.086 0.914 40 H 0.240 0.760 41 H 0.099 0.901 42 H 0.097 0.903 43 H 0.095 0.905 44 H 0.101 0.899 45 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 5.952 13.905 -3.198 15.460 hybrid contribution -0.772 -1.648 -0.051 1.821 sum 5.180 12.257 -3.249 13.697 Atomic orbital electron populations 1.86527 1.17234 1.82217 1.50638 1.25481 0.85487 1.12071 0.95985 0.93792 0.77945 0.72521 0.85424 1.20463 1.02113 0.92660 0.99910 1.21720 0.89432 1.01174 0.89832 1.21816 1.05982 0.90510 1.02407 1.18978 0.89647 0.92099 0.84953 1.86472 1.63611 1.39768 1.30345 1.23120 0.98116 0.94508 0.89417 1.20539 0.78606 0.87702 0.83890 1.90842 1.54833 1.20206 1.78400 1.45732 1.51584 1.16808 1.21773 1.20963 0.94801 0.94659 0.85182 0.91930 1.21742 0.97452 1.01285 0.95335 1.22213 0.98661 0.99759 0.98156 1.21771 0.94048 0.83550 0.95967 0.91838 1.86455 1.62428 1.27699 1.61843 1.21560 0.98138 1.00905 0.94694 1.21626 0.94990 1.00868 0.97475 1.20867 1.13478 0.81510 1.03143 1.43903 0.98207 1.04012 0.99441 1.94501 1.36015 1.68353 1.42099 1.94682 1.56378 1.69378 1.18419 1.20841 0.94167 0.94792 0.92446 0.75179 0.87294 1.23428 1.18976 0.79441 0.77700 0.83963 0.83700 0.74084 0.94060 0.90245 0.90532 0.91447 0.76007 0.90147 0.90323 0.90461 0.89869 0.83227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 1.96 12.77 -148.98 -1.90 0.06 16 2 C -0.08 0.50 2.82 71.24 0.20 0.70 16 3 Si 0.80 -8.21 29.78 68.60 2.04 -6.16 16 4 C -0.15 0.85 5.39 -19.85 -0.11 0.74 16 5 C 0.00 0.05 8.66 22.25 0.19 0.24 16 6 C -0.19 2.03 9.04 22.36 0.20 2.23 16 7 C 0.19 0.14 6.67 22.51 0.15 0.30 16 8 O -0.29 -1.41 7.68 -63.42 -0.49 -1.90 16 9 C 0.03 -0.17 5.22 71.23 0.37 0.20 16 10 C 0.51 0.95 7.87 87.66 0.69 1.64 16 11 O -0.57 -8.77 16.16 16.01 0.26 -8.51 16 12 N -0.70 3.39 5.08 -442.54 -2.25 1.14 16 13 C 0.15 -0.16 2.46 44.99 0.11 -0.05 16 14 H 0.06 0.30 7.58 -2.39 -0.02 0.29 16 15 C -0.12 0.02 5.35 30.60 0.16 0.18 16 16 C -0.15 0.31 5.64 30.60 0.17 0.48 16 17 C 0.11 -0.37 3.77 30.59 0.12 -0.26 16 18 H 0.06 -0.29 8.14 -2.39 -0.02 -0.31 16 19 O -0.58 1.82 11.97 -148.98 -1.78 0.04 16 20 C -0.12 0.42 5.66 30.59 0.17 0.60 16 21 C -0.11 0.53 5.24 30.59 0.16 0.69 16 22 C -0.10 -0.76 6.87 36.48 0.25 -0.51 16 23 N 0.03 0.59 4.45 -46.25 -0.21 0.39 16 24 O -0.20 -3.85 18.45 18.88 0.35 -3.50 16 25 O -0.18 -3.88 17.24 25.60 0.44 -3.44 16 26 C 0.00 -0.01 9.11 22.25 0.20 0.20 16 27 H 0.40 -4.87 8.70 -74.06 -0.64 -5.51 16 28 H 0.11 -0.45 7.96 -2.39 -0.02 -0.47 16 29 H -0.31 0.12 7.11 99.48 0.71 0.83 16 30 H -0.26 2.18 7.11 99.48 0.71 2.89 16 31 H 0.19 -3.66 4.87 -2.91 -0.01 -3.67 16 32 H 0.21 -4.27 6.30 -2.91 -0.02 -4.28 16 33 H 0.14 -2.20 7.65 -2.39 -0.02 -2.21 16 34 H 0.15 -2.29 7.67 -2.39 -0.02 -2.31 16 35 H 0.42 -5.52 8.60 -92.71 -0.80 -6.32 16 36 H 0.04 0.23 8.14 -2.39 -0.02 0.21 16 37 H 0.08 -0.15 7.68 -2.39 -0.02 -0.16 16 38 H 0.08 -0.27 8.14 -2.39 -0.02 -0.29 16 39 H 0.07 -0.02 8.14 -2.39 -0.02 -0.04 16 40 H 0.39 -3.69 9.08 -74.05 -0.67 -4.36 16 41 H 0.08 -0.32 8.14 -2.39 -0.02 -0.34 16 42 H 0.08 -0.30 8.14 -2.39 -0.02 -0.32 16 43 H 0.08 -0.47 8.14 -2.39 -0.02 -0.49 16 44 H 0.08 -0.42 7.68 -2.38 -0.02 -0.44 16 45 H 0.15 0.62 7.61 -2.91 -0.02 0.60 16 Total: 0.00 -39.73 375.96 -1.49 -41.22 By element: Atomic # 1 Polarization: -25.71 SS G_CDS: -1.00 Total: -26.71 kcal Atomic # 6 Polarization: 4.34 SS G_CDS: 3.05 Total: 7.38 kcal Atomic # 7 Polarization: 3.98 SS G_CDS: -2.45 Total: 1.52 kcal Atomic # 8 Polarization: -14.13 SS G_CDS: -3.12 Total: -17.25 kcal Atomic # 14 Polarization: -8.21 SS G_CDS: 2.04 Total: -6.16 kcal Total: -39.73 -1.49 -41.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12892148_4549638.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.080 kcal (2) G-P(sol) polarization free energy of solvation -39.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds