Wall clock time and date at job start Sat Mar 6 2021 17:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35898 * 117.00187 * 2 1 4 4 C 1.38612 * 120.02888 * 180.27693 * 3 2 1 5 5 C 1.38658 * 119.88831 * 180.21192 * 4 3 2 6 6 O 1.35897 * 120.02030 * 179.79406 * 5 4 3 7 7 C 1.42898 * 117.00481 * 359.71749 * 6 5 4 8 8 C 1.50703 * 109.47171 * 180.02562 * 7 6 5 9 9 O 1.21278 * 119.99985 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00161 * 180.02562 * 8 7 6 11 11 C 1.46496 * 120.00271 * 180.02562 * 10 8 7 12 12 H 1.09001 * 109.47199 * 324.99664 * 11 10 8 13 13 C 1.52996 * 109.47084 * 84.99619 * 11 10 8 14 14 C 1.53002 * 109.47141 * 180.02562 * 13 11 10 15 15 C 1.53009 * 109.47090 * 300.00105 * 14 13 11 16 16 H 1.08992 * 109.46996 * 179.97438 * 15 14 13 17 17 O 1.42900 * 109.46736 * 300.00023 * 15 14 13 18 18 C 1.52998 * 109.46882 * 59.99780 * 15 14 13 19 19 C 1.53002 * 109.47076 * 204.99915 * 11 10 8 20 20 C 1.38742 * 119.94765 * 359.51455 * 5 4 3 21 21 C 1.50701 * 119.97527 * 180.27612 * 20 5 4 22 22 O 1.42898 * 109.47015 * 285.00405 * 21 20 5 23 23 Si 1.86302 * 109.47251 * 164.99764 * 21 20 5 24 24 C 1.38202 * 120.05714 * 0.25332 * 20 5 4 25 25 C 1.38156 * 120.10537 * 359.97438 * 24 20 5 26 26 H 1.08993 * 109.47511 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47308 * 300.00060 * 1 2 3 28 28 H 1.09001 * 109.46817 * 59.99392 * 1 2 3 29 29 H 1.07997 * 120.05123 * 359.97438 * 4 3 2 30 30 H 1.09002 * 109.47259 * 300.00417 * 7 6 5 31 31 H 1.09001 * 109.47074 * 60.00439 * 7 6 5 32 32 H 0.97005 * 119.99463 * 359.97438 * 10 8 7 33 33 H 1.09002 * 109.47281 * 299.99855 * 13 11 10 34 34 H 1.08999 * 109.47646 * 60.00441 * 13 11 10 35 35 H 1.09004 * 109.47634 * 180.02562 * 14 13 11 36 36 H 1.09001 * 109.47355 * 59.99915 * 14 13 11 37 37 H 0.96696 * 113.99952 * 299.99341 * 17 15 14 38 38 H 1.09002 * 109.46949 * 180.02562 * 18 15 14 39 39 H 1.08997 * 109.47585 * 60.00535 * 18 15 14 40 40 H 1.08997 * 109.46609 * 299.99518 * 19 11 10 41 41 H 1.09002 * 109.47469 * 59.99768 * 19 11 10 42 42 H 1.09005 * 109.46465 * 44.99984 * 21 20 5 43 43 H 0.96702 * 113.99878 * 179.97438 * 22 21 20 44 44 H 1.48493 * 109.99821 * 60.00313 * 23 21 20 45 45 H 1.48497 * 109.99800 * 181.32191 * 23 21 20 46 46 H 1.07990 * 119.95034 * 180.02562 * 24 20 5 47 47 H 1.07997 * 119.97359 * 179.97438 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4302 1.2840 -0.0058 5 6 4.0567 2.5210 -0.0013 6 8 5.4136 2.5959 -0.0028 7 6 6.1316 1.3604 -0.0027 8 6 7.6125 1.6400 -0.0038 9 8 8.0135 2.7845 -0.0050 10 7 8.4913 0.6181 -0.0044 11 6 9.9308 0.8898 -0.0049 12 1 10.1315 1.7846 -0.5942 13 6 10.4091 1.1076 1.4320 14 6 11.9125 1.3921 1.4314 15 6 12.6564 0.2025 0.8210 16 1 13.7273 0.4053 0.8202 17 8 12.3938 -0.9707 1.5935 18 6 12.1780 -0.0153 -0.6158 19 6 10.6742 -0.3001 -0.6151 20 6 3.2972 3.6821 -0.0013 21 6 3.9775 5.0268 -0.0027 22 8 4.5050 5.2951 1.2980 23 14 2.7435 6.3466 -0.4569 24 6 1.9173 3.6066 -0.0004 25 6 1.2906 2.3753 0.0000 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 4.0196 0.3791 -0.0099 30 1 5.8708 0.7886 0.8879 31 1 5.8691 0.7875 -0.8921 32 1 8.1704 -0.2974 -0.0038 33 1 9.8795 1.9554 1.8667 34 1 10.2086 0.2129 2.0213 35 1 12.2534 1.5468 2.4552 36 1 12.1128 2.2870 0.8422 37 1 12.6720 -0.9038 2.5172 38 1 12.7076 -0.8630 -1.0506 39 1 12.3782 0.8796 -1.2051 40 1 10.4736 -1.1948 -0.0258 41 1 10.3334 -0.4553 -1.6388 42 1 4.7893 5.0224 -0.7302 43 1 4.9583 6.1463 1.3707 44 1 1.6318 6.3627 0.5273 45 1 3.4093 7.6735 -0.4930 46 1 1.3278 4.5114 -0.0007 47 1 0.2122 2.3187 0.0011 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12892148_4974312.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 17:56:08 Heat of formation + Delta-G solvation = -164.082860 kcal Electronic energy + Delta-G solvation = -29691.491107 eV Core-core repulsion = 25420.599315 eV Total energy + Delta-G solvation = -4270.891793 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 338.165 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.86360 -41.17846 -40.14788 -39.50467 -38.27300 -37.12683 -36.66918 -34.40583 -32.42056 -31.86037 -31.57848 -30.46591 -28.67079 -28.29420 -26.08333 -24.13107 -23.82278 -23.02514 -22.38868 -21.62202 -20.86120 -19.90595 -18.58297 -18.56410 -17.97428 -17.67927 -17.49457 -17.43081 -16.99317 -16.88750 -16.66114 -16.48921 -15.83028 -15.62997 -15.60257 -15.37718 -15.20490 -14.75113 -14.43137 -14.08011 -14.03027 -13.80046 -13.71834 -13.49878 -13.37684 -13.24256 -13.21421 -13.07442 -12.52358 -12.46820 -12.42957 -12.07874 -12.00148 -11.76207 -11.64401 -11.61798 -11.28992 -11.08851 -10.69799 -10.41722 -10.18434 -9.72201 -9.12140 -4.94859 0.17465 0.28565 1.29696 1.38761 1.41499 1.58330 1.90512 2.23155 2.51145 2.55184 3.37102 3.45545 3.46965 3.68643 3.69925 3.72010 3.86674 3.93068 3.97004 4.00528 4.04176 4.04407 4.17503 4.19957 4.29204 4.35754 4.36431 4.41763 4.42197 4.45005 4.48508 4.59928 4.62384 4.78494 4.86820 4.94612 4.99112 5.02150 5.11799 5.11921 5.20998 5.23059 5.27963 5.31005 5.42601 5.46297 6.09832 6.33732 6.41258 6.58642 6.88586 7.07131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.328 6.328 3 C 0.165 3.835 4 C -0.252 4.252 5 C 0.176 3.824 6 O -0.302 6.302 7 C 0.034 3.966 8 C 0.515 3.485 9 O -0.567 6.567 10 N -0.707 5.707 11 C 0.149 3.851 12 H 0.068 0.932 13 C -0.121 4.121 14 C -0.148 4.148 15 C 0.104 3.896 16 H 0.067 0.933 17 O -0.578 6.578 18 C -0.114 4.114 19 C -0.113 4.113 20 C -0.161 4.161 21 C -0.082 4.082 22 O -0.557 6.557 23 Si 0.780 3.220 24 C -0.042 4.042 25 C -0.237 4.237 26 H 0.118 0.882 27 H 0.065 0.935 28 H 0.072 0.928 29 H 0.155 0.845 30 H 0.116 0.884 31 H 0.125 0.875 32 H 0.418 0.582 33 H 0.040 0.960 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.390 0.610 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.066 0.934 43 H 0.387 0.613 44 H -0.280 1.280 45 H -0.290 1.290 46 H 0.152 0.848 47 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.773 -4.852 -2.572 5.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.242 6.242 3 C 0.119 3.881 4 C -0.271 4.271 5 C 0.129 3.871 6 O -0.214 6.214 7 C -0.044 4.044 8 C 0.301 3.699 9 O -0.445 6.445 10 N -0.361 5.361 11 C 0.045 3.955 12 H 0.086 0.914 13 C -0.159 4.159 14 C -0.186 4.186 15 C 0.046 3.954 16 H 0.085 0.915 17 O -0.386 6.386 18 C -0.151 4.151 19 C -0.151 4.151 20 C -0.162 4.162 21 C -0.189 4.189 22 O -0.367 6.367 23 Si 0.683 3.317 24 C -0.059 4.059 25 C -0.256 4.256 26 H 0.136 0.864 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.173 0.827 30 H 0.134 0.866 31 H 0.143 0.857 32 H 0.256 0.744 33 H 0.059 0.941 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.089 0.911 37 H 0.240 0.760 38 H 0.097 0.903 39 H 0.102 0.898 40 H 0.097 0.903 41 H 0.096 0.904 42 H 0.085 0.915 43 H 0.237 0.763 44 H -0.207 1.207 45 H -0.217 1.217 46 H 0.169 0.831 47 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -2.167 -4.147 -2.788 5.447 hybrid contribution 0.960 0.312 1.586 1.880 sum -1.207 -3.835 -1.202 4.196 Atomic orbital electron populations 1.23413 0.75979 1.05754 1.02698 1.86054 1.23780 1.26400 1.87923 1.18848 0.91641 0.84967 0.92688 1.20551 0.93444 0.97363 1.15721 1.18568 0.81790 0.93166 0.93552 1.86186 1.15404 1.31663 1.88159 1.22741 0.88566 0.86500 1.06548 1.20422 0.88397 0.85261 0.75794 1.90745 1.80702 1.23052 1.49957 1.45799 1.06088 1.09534 1.74666 1.20999 0.78614 0.99235 0.96678 0.91411 1.21752 0.96166 1.01438 0.96585 1.22210 0.94801 0.99206 1.02378 1.21802 0.97864 0.84262 0.91510 0.91540 1.86463 1.86518 1.38578 1.27027 1.21570 0.95339 1.03289 0.94952 1.21651 0.94942 0.97037 1.01506 1.18758 0.93161 0.92344 1.11932 1.25002 1.04758 1.01832 0.87290 1.86558 1.76333 1.42839 1.30921 0.94152 0.76621 0.73527 0.87360 1.20904 0.92037 0.98833 0.94146 1.21386 1.01679 0.91101 1.11410 0.86425 0.91614 0.90989 0.82720 0.86627 0.85694 0.74418 0.94084 0.90684 0.90508 0.91071 0.76037 0.90292 0.89780 0.90257 0.90427 0.91542 0.76334 1.20660 1.21743 0.83074 0.82330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.08 9.81 113.37 1.11 1.03 16 2 O -0.33 -0.72 10.49 -92.40 -0.97 -1.69 16 3 C 0.16 0.62 6.68 22.49 0.15 0.77 16 4 C -0.25 -1.09 8.97 22.46 0.20 -0.89 16 5 C 0.18 1.42 6.66 22.49 0.15 1.57 16 6 O -0.30 -3.02 8.99 -73.35 -0.66 -3.68 16 7 C 0.03 0.05 5.22 71.24 0.37 0.42 16 8 C 0.52 3.15 7.87 87.66 0.69 3.84 16 9 O -0.57 -9.45 16.16 16.01 0.26 -9.19 16 10 N -0.71 0.36 5.08 -442.54 -2.25 -1.89 16 11 C 0.15 0.17 2.45 44.99 0.11 0.29 16 12 H 0.07 0.39 7.58 -2.39 -0.02 0.37 16 13 C -0.12 -0.23 5.35 30.59 0.16 -0.07 16 14 C -0.15 0.17 5.64 30.60 0.17 0.34 16 15 C 0.10 -0.26 3.77 30.60 0.12 -0.14 16 16 H 0.07 -0.27 8.14 -2.39 -0.02 -0.29 16 17 O -0.58 0.81 11.97 -148.98 -1.78 -0.97 16 18 C -0.11 0.29 5.67 30.61 0.17 0.47 16 19 C -0.11 0.29 5.25 30.61 0.16 0.45 16 20 C -0.16 -1.25 5.31 -19.75 -0.10 -1.35 16 21 C -0.08 -0.59 2.36 71.24 0.17 -0.42 16 22 O -0.56 -6.03 12.86 -148.98 -1.92 -7.95 16 23 Si 0.78 1.18 30.19 68.60 2.07 3.25 16 24 C -0.04 -0.15 8.65 22.24 0.19 0.05 16 25 C -0.24 -0.39 9.04 22.38 0.20 -0.19 16 26 H 0.12 -0.99 8.14 -2.39 -0.02 -1.01 16 27 H 0.07 -0.42 7.66 -2.38 -0.02 -0.44 16 28 H 0.07 -0.54 7.66 -2.39 -0.02 -0.56 16 29 H 0.16 -0.07 6.30 -2.91 -0.02 -0.09 16 30 H 0.12 -0.36 7.67 -2.39 -0.02 -0.38 16 31 H 0.13 -0.61 7.65 -2.39 -0.02 -0.63 16 32 H 0.42 -3.04 8.60 -92.70 -0.80 -3.84 16 33 H 0.04 0.30 8.14 -2.39 -0.02 0.28 16 34 H 0.07 0.09 7.68 -2.39 -0.02 0.07 16 35 H 0.08 -0.21 8.14 -2.38 -0.02 -0.22 16 36 H 0.07 -0.01 8.14 -2.39 -0.02 -0.03 16 37 H 0.39 -3.03 9.08 -74.06 -0.67 -3.70 16 38 H 0.08 -0.21 8.14 -2.39 -0.02 -0.23 16 39 H 0.08 -0.30 8.14 -2.39 -0.02 -0.32 16 40 H 0.08 -0.16 7.68 -2.39 -0.02 -0.18 16 41 H 0.08 -0.30 8.14 -2.39 -0.02 -0.32 16 42 H 0.07 0.53 7.82 -2.38 -0.02 0.51 16 43 H 0.39 1.33 8.74 -74.06 -0.65 0.68 16 44 H -0.28 -1.50 6.75 99.48 0.67 -0.83 16 45 H -0.29 -1.75 7.11 99.48 0.71 -1.04 16 46 H 0.15 -0.04 4.89 -2.92 -0.01 -0.05 16 47 H 0.16 -0.63 6.29 -2.91 -0.02 -0.65 16 Total: 0.00 -26.56 378.75 -2.31 -28.87 By element: Atomic # 1 Polarization: -11.81 SS G_CDS: -1.09 Total: -12.91 kcal Atomic # 6 Polarization: 2.12 SS G_CDS: 4.03 Total: 6.15 kcal Atomic # 7 Polarization: 0.36 SS G_CDS: -2.25 Total: -1.89 kcal Atomic # 8 Polarization: -18.41 SS G_CDS: -5.07 Total: -23.48 kcal Atomic # 14 Polarization: 1.18 SS G_CDS: 2.07 Total: 3.25 kcal Total: -26.56 -2.31 -28.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12892148_4974312.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.215 kcal (2) G-P(sol) polarization free energy of solvation -26.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds