Wall clock time and date at job start Sat Mar 6 2021 17:56:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42907 * 1 3 3 Si 1.86304 * 109.46966 * 2 1 4 4 C 1.50688 * 109.47315 * 120.00319 * 2 1 3 5 5 C 1.34236 * 126.50278 * 255.26894 * 4 2 1 6 6 N 1.36834 * 109.93905 * 180.20350 * 5 4 2 7 7 C 1.46506 * 125.06131 * 179.81118 * 6 5 4 8 8 C 1.50696 * 109.47534 * 264.70123 * 7 6 5 9 9 O 1.21286 * 119.99720 * 0.02562 * 8 7 6 10 10 N 1.34771 * 120.00034 * 180.02562 * 8 7 6 11 11 C 1.46500 * 120.00215 * 180.02562 * 10 8 7 12 12 H 1.09006 * 109.47173 * 325.00344 * 11 10 8 13 13 C 1.53009 * 109.46972 * 84.99685 * 11 10 8 14 14 C 1.52997 * 109.46843 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.47050 * 300.00019 * 14 13 11 16 16 H 1.09008 * 109.47298 * 180.02562 * 15 14 13 17 17 O 1.42903 * 109.47171 * 299.99915 * 15 14 13 18 18 C 1.52999 * 109.47329 * 60.00237 * 15 14 13 19 19 C 1.52997 * 109.46862 * 299.99879 * 18 15 14 20 20 C 1.37690 * 109.87525 * 359.55485 * 6 5 4 21 21 C 1.39082 * 133.51538 * 180.28347 * 20 6 5 22 22 C 1.37787 * 119.78189 * 179.97438 * 21 20 6 23 23 C 1.38796 * 120.66360 * 0.02562 * 22 21 20 24 24 C 1.36660 * 120.52689 * 359.95936 * 23 22 21 25 25 C 1.39592 * 119.76501 * 0.03960 * 24 23 22 26 26 H 0.96698 * 113.99594 * 299.99904 * 1 2 3 27 27 H 1.09006 * 109.46946 * 240.00633 * 2 1 3 28 28 H 1.48496 * 109.99988 * 300.00439 * 3 2 1 29 29 H 1.48506 * 109.99742 * 61.32506 * 3 2 1 30 30 H 1.07997 * 125.03144 * 0.04328 * 5 4 2 31 31 H 1.09004 * 109.46470 * 144.69825 * 7 6 5 32 32 H 1.09001 * 109.46937 * 24.70757 * 7 6 5 33 33 H 0.96996 * 120.00472 * 359.97438 * 10 8 7 34 34 H 1.08997 * 109.47270 * 300.00197 * 13 11 10 35 35 H 1.08997 * 109.46854 * 60.00323 * 13 11 10 36 36 H 1.08999 * 109.46989 * 180.02562 * 14 13 11 37 37 H 1.08997 * 109.47549 * 60.00238 * 14 13 11 38 38 H 0.96700 * 114.00311 * 300.00378 * 17 15 14 39 39 H 1.08997 * 109.46819 * 60.00057 * 18 15 14 40 40 H 1.08997 * 109.47286 * 180.02562 * 18 15 14 41 41 H 1.09009 * 109.46962 * 179.97438 * 19 18 15 42 42 H 1.08997 * 109.47549 * 299.99731 * 19 18 15 43 43 H 1.07998 * 120.11280 * 359.94743 * 21 20 6 44 44 H 1.07997 * 119.67332 * 179.97438 * 22 21 20 45 45 H 1.07994 * 119.73697 * 179.97438 * 23 22 21 46 46 H 1.08007 * 120.11815 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 1.2303 5 6 2.4563 -0.1374 2.3249 6 7 2.8042 -1.0992 3.2338 7 6 3.4099 -0.8407 4.5425 8 6 4.9081 -0.9632 4.4357 9 8 5.4196 -1.2388 3.3711 10 7 5.6795 -0.7665 5.5231 11 6 7.1360 -0.8850 5.4192 12 1 7.3867 -1.6692 4.7048 13 6 7.7233 0.4452 4.9430 14 6 9.2443 0.3212 4.8338 15 6 9.8268 -0.0321 6.2038 16 1 10.9105 -0.1200 6.1262 17 8 9.4987 0.9960 7.1405 18 6 9.2396 -1.3623 6.6800 19 6 7.7186 -1.2383 6.7891 20 6 2.4948 -2.3459 2.7378 21 6 2.6297 -3.6364 3.2386 22 6 2.2150 -4.7108 2.4823 23 6 1.6634 -4.5193 1.2231 24 6 1.5213 -3.2600 0.7117 25 6 1.9347 -2.1571 1.4609 26 1 -0.3932 0.4417 0.7651 27 1 1.7924 -0.5138 -0.8901 28 1 1.5614 2.4679 -1.2084 29 1 1.5880 2.4585 1.2244 30 1 2.5872 0.9253 2.4661 31 1 3.0366 -1.5663 5.2653 32 1 3.1501 0.1657 4.8707 33 1 5.2706 -0.5457 6.3745 34 1 7.3086 0.6968 3.9669 35 1 7.4726 1.2294 5.6573 36 1 9.6627 1.2690 4.4950 37 1 9.4946 -0.4629 4.1193 38 1 9.8397 1.8689 6.9020 39 1 9.4899 -2.1464 5.9655 40 1 9.6542 -1.6138 7.6561 41 1 7.3001 -2.1861 7.1279 42 1 7.4682 -0.4542 7.5036 43 1 3.0585 -3.7958 4.2169 44 1 2.3210 -5.7122 2.8727 45 1 1.3437 -5.3723 0.6429 46 1 1.0908 -3.1186 -0.2687 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12892148_9818708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 17:56:40 Heat of formation + Delta-G solvation = -53.903752 kcal Electronic energy + Delta-G solvation = -28650.218471 eV Core-core repulsion = 24699.590596 eV Total energy + Delta-G solvation = -3950.627876 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.55146 -41.06871 -39.65559 -38.16215 -37.72983 -36.64405 -34.45753 -33.95016 -31.83143 -31.55125 -30.26604 -30.04844 -28.48131 -25.80353 -23.92675 -23.79739 -23.33443 -22.51511 -21.57117 -20.93669 -20.61619 -18.70951 -18.45297 -17.87539 -17.66449 -17.42631 -16.99008 -16.50780 -16.41687 -16.21519 -16.06280 -15.64868 -15.52762 -15.28195 -14.87397 -14.72591 -14.49633 -14.34648 -14.09014 -14.02124 -13.73284 -13.53532 -13.23107 -13.11765 -13.04261 -12.73117 -12.58045 -12.44628 -12.40840 -12.04378 -12.00760 -11.74567 -11.61084 -11.27399 -11.13921 -10.71320 -10.53822 -10.45885 -10.10947 -9.17078 -8.64436 -4.87479 0.13155 0.63243 1.34068 1.40553 1.47751 1.57328 1.67210 1.95982 2.21203 2.94168 3.39126 3.52608 3.55959 3.64995 3.67996 3.73291 3.80122 3.83187 3.99510 4.02123 4.07395 4.12532 4.20740 4.23061 4.28896 4.39320 4.46040 4.48986 4.51007 4.58133 4.65233 4.70776 4.77920 4.88353 4.90191 4.97291 5.05152 5.12856 5.14329 5.15641 5.26100 5.34983 5.49416 5.50125 5.65570 5.72852 5.74366 6.17961 6.22634 6.49083 6.59537 6.90322 7.15407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.553 6.553 2 C -0.050 4.050 3 Si 0.764 3.236 4 C -0.214 4.214 5 C 0.073 3.927 6 N -0.466 5.466 7 C 0.087 3.913 8 C 0.493 3.507 9 O -0.566 6.566 10 N -0.710 5.710 11 C 0.150 3.850 12 H 0.062 0.938 13 C -0.117 4.117 14 C -0.148 4.148 15 C 0.104 3.896 16 H 0.063 0.937 17 O -0.578 6.578 18 C -0.115 4.115 19 C -0.114 4.114 20 C 0.092 3.908 21 C -0.135 4.135 22 C -0.107 4.107 23 C -0.154 4.154 24 C -0.088 4.088 25 C -0.116 4.116 26 H 0.384 0.616 27 H 0.104 0.896 28 H -0.300 1.300 29 H -0.260 1.260 30 H 0.196 0.804 31 H 0.141 0.859 32 H 0.160 0.840 33 H 0.418 0.582 34 H 0.046 0.954 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.391 0.609 39 H 0.081 0.919 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.079 0.921 43 H 0.132 0.868 44 H 0.145 0.855 45 H 0.137 0.863 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.563 2.689 7.265 8.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.360 6.360 2 C -0.159 4.159 3 Si 0.666 3.334 4 C -0.222 4.222 5 C -0.052 4.052 6 N -0.148 5.148 7 C -0.037 4.037 8 C 0.278 3.722 9 O -0.444 6.444 10 N -0.363 5.363 11 C 0.045 3.955 12 H 0.081 0.919 13 C -0.156 4.156 14 C -0.186 4.186 15 C 0.045 3.955 16 H 0.081 0.919 17 O -0.386 6.386 18 C -0.152 4.152 19 C -0.151 4.151 20 C -0.013 4.013 21 C -0.155 4.155 22 C -0.126 4.126 23 C -0.172 4.172 24 C -0.106 4.106 25 C -0.120 4.120 26 H 0.232 0.768 27 H 0.122 0.878 28 H -0.228 1.228 29 H -0.186 1.186 30 H 0.213 0.787 31 H 0.159 0.841 32 H 0.177 0.823 33 H 0.255 0.745 34 H 0.065 0.935 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.087 0.913 38 H 0.240 0.760 39 H 0.099 0.901 40 H 0.094 0.906 41 H 0.092 0.908 42 H 0.098 0.902 43 H 0.150 0.850 44 H 0.163 0.837 45 H 0.155 0.845 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 3.651 2.589 6.581 7.959 hybrid contribution -0.881 0.139 0.151 0.905 sum 2.770 2.728 6.732 7.774 Atomic orbital electron populations 1.86563 1.19042 1.80594 1.49840 1.24575 0.82829 1.11583 0.96877 0.94051 0.90468 0.71183 0.77656 1.20700 1.11326 0.91866 0.98263 1.22001 0.99339 0.95126 0.88760 1.43424 1.51817 1.03879 1.15691 1.21960 0.88981 1.08752 0.84029 1.21361 0.90377 0.76411 0.84066 1.90796 1.75690 1.48324 1.29602 1.45924 1.06876 1.71124 1.12328 1.20923 0.79002 0.97498 0.98081 0.91931 1.21717 0.95495 0.97545 1.00803 1.22199 0.95513 1.02950 0.97983 1.21790 0.97843 0.88315 0.87525 0.91864 1.86462 1.80699 1.21302 1.50100 1.21552 0.95144 0.95810 1.02744 1.21629 0.95588 1.02624 0.95305 1.18395 1.01526 0.86970 0.94457 1.20244 1.04694 0.89139 1.01432 1.21132 0.98109 0.98988 0.94340 1.20922 1.02335 0.97041 0.96952 1.20459 0.99035 0.91686 0.99452 1.19339 1.04068 0.93816 0.94786 0.76756 0.87812 1.22802 1.18555 0.78741 0.84099 0.82292 0.74502 0.93521 0.90598 0.90428 0.91337 0.76007 0.90062 0.90600 0.90806 0.90245 0.85044 0.83677 0.84533 0.86273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -3.84 12.88 -148.98 -1.92 -5.76 16 2 C -0.05 -0.23 3.06 71.23 0.22 -0.01 16 3 Si 0.76 0.08 30.83 68.60 2.11 2.20 16 4 C -0.21 -1.33 5.57 -18.63 -0.10 -1.43 16 5 C 0.07 0.15 9.89 83.00 0.82 0.97 16 6 N -0.47 -1.14 2.27 -519.99 -1.18 -2.32 16 7 C 0.09 -0.53 6.48 85.63 0.56 0.03 16 8 C 0.49 -0.13 7.86 87.66 0.69 0.56 16 9 O -0.57 -6.03 16.09 -3.05 -0.05 -6.08 16 10 N -0.71 3.74 5.08 -442.52 -2.25 1.49 16 11 C 0.15 -0.31 2.45 44.99 0.11 -0.20 16 12 H 0.06 0.22 7.58 -2.38 -0.02 0.20 16 13 C -0.12 0.20 5.35 30.60 0.16 0.37 16 14 C -0.15 0.51 5.64 30.59 0.17 0.68 16 15 C 0.10 -0.41 3.77 30.59 0.12 -0.30 16 16 H 0.06 -0.32 8.14 -2.38 -0.02 -0.34 16 17 O -0.58 1.84 11.97 -148.98 -1.78 0.06 16 18 C -0.11 0.43 5.66 30.59 0.17 0.61 16 19 C -0.11 0.52 5.25 30.59 0.16 0.68 16 20 C 0.09 0.72 6.80 39.03 0.27 0.98 16 21 C -0.13 -0.78 10.00 22.37 0.22 -0.56 16 22 C -0.11 -0.56 10.01 22.30 0.22 -0.34 16 23 C -0.15 -1.07 9.97 22.03 0.22 -0.85 16 24 C -0.09 -0.87 10.05 22.23 0.22 -0.64 16 25 C -0.12 -1.20 6.35 -20.20 -0.13 -1.32 16 26 H 0.38 0.13 8.70 -74.06 -0.64 -0.52 16 27 H 0.10 0.58 7.96 -2.38 -0.02 0.56 16 28 H -0.30 -2.27 7.11 99.48 0.71 -1.56 16 29 H -0.26 -0.03 6.99 99.48 0.70 0.66 16 30 H 0.20 -0.91 6.27 -2.91 -0.02 -0.93 16 31 H 0.14 -1.51 8.14 -2.39 -0.02 -1.53 16 32 H 0.16 -2.18 8.12 -2.39 -0.02 -2.20 16 33 H 0.42 -4.94 8.60 -92.71 -0.80 -5.74 16 34 H 0.05 0.12 8.14 -2.39 -0.02 0.10 16 35 H 0.08 -0.20 7.68 -2.39 -0.02 -0.22 16 36 H 0.08 -0.39 8.14 -2.39 -0.02 -0.41 16 37 H 0.07 -0.13 8.14 -2.39 -0.02 -0.15 16 38 H 0.39 -3.76 9.08 -74.06 -0.67 -4.43 16 39 H 0.08 -0.35 8.14 -2.39 -0.02 -0.37 16 40 H 0.08 -0.26 8.14 -2.39 -0.02 -0.28 16 41 H 0.07 -0.40 8.14 -2.38 -0.02 -0.42 16 42 H 0.08 -0.33 7.68 -2.39 -0.02 -0.35 16 43 H 0.13 0.15 8.06 -2.91 -0.02 0.12 16 44 H 0.15 0.01 8.06 -2.91 -0.02 -0.01 16 45 H 0.14 0.38 8.06 -2.91 -0.02 0.35 16 46 H 0.12 1.05 8.06 -2.91 -0.02 1.03 16 Total: 0.00 -25.61 376.43 -2.03 -27.64 By element: Atomic # 1 Polarization: -15.37 SS G_CDS: -1.07 Total: -16.44 kcal Atomic # 6 Polarization: -4.89 SS G_CDS: 4.10 Total: -0.79 kcal Atomic # 7 Polarization: 2.60 SS G_CDS: -3.43 Total: -0.82 kcal Atomic # 8 Polarization: -8.03 SS G_CDS: -3.75 Total: -11.79 kcal Atomic # 14 Polarization: 0.08 SS G_CDS: 2.11 Total: 2.20 kcal Total: -25.61 -2.03 -27.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12892148_9818708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.263 kcal (2) G-P(sol) polarization free energy of solvation -25.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds