Wall clock time and date at job start Sat Mar 6 2021 22:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 113.99840 * 2 1 4 4 H 1.09002 * 112.84580 * 18.80051 * 3 2 1 5 5 C 1.53776 * 113.61425 * 149.99799 * 3 2 1 6 6 C 1.53775 * 87.08155 * 89.11839 * 5 3 2 7 7 H 1.09000 * 113.61432 * 270.79664 * 6 5 3 8 8 C 1.52998 * 113.61643 * 139.98146 * 6 5 3 9 9 N 1.46508 * 109.47291 * 176.53006 * 8 6 5 10 10 C 1.34771 * 119.99926 * 179.97438 * 9 8 6 11 11 O 1.21694 * 120.00567 * 354.85294 * 10 9 8 12 12 C 1.46682 * 119.99864 * 174.85129 * 10 9 8 13 13 C 1.37867 * 126.23343 * 3.68957 * 12 10 9 14 14 C 1.39837 * 107.08967 * 179.85147 * 13 12 10 15 15 C 1.50692 * 126.07040 * 180.14261 * 14 13 12 16 16 O 1.42905 * 109.47055 * 245.32812 * 15 14 13 17 17 Si 1.86299 * 109.47332 * 5.32711 * 15 14 13 18 18 C 1.35459 * 107.85950 * 0.42033 * 14 13 12 19 19 N 1.35532 * 108.87164 * 359.74036 * 18 14 13 20 20 C 1.46499 * 125.67721 * 180.02562 * 19 18 14 21 21 C 1.53784 * 87.17421 * 25.38950 * 6 5 3 22 22 H 1.08996 * 109.47437 * 60.00579 * 1 2 3 23 23 H 1.09009 * 109.46873 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47750 * 299.99984 * 1 2 3 25 25 H 1.08998 * 113.62083 * 334.56667 * 5 3 2 26 26 H 1.09004 * 113.68863 * 203.67402 * 5 3 2 27 27 H 1.09006 * 109.47098 * 296.52395 * 8 6 5 28 28 H 1.08996 * 109.47507 * 56.52896 * 8 6 5 29 29 H 0.96998 * 119.99859 * 359.97438 * 9 8 6 30 30 H 1.08002 * 126.45747 * 359.96999 * 13 12 10 31 31 H 1.09000 * 109.47197 * 125.32781 * 15 14 13 32 32 H 0.96693 * 114.00279 * 59.99752 * 16 15 14 33 33 H 1.48496 * 109.99974 * 58.68235 * 17 15 14 34 34 H 1.48497 * 109.99950 * 180.02562 * 17 15 14 35 35 H 1.07997 * 125.56125 * 179.70540 * 18 14 13 36 36 H 1.09000 * 109.47361 * 265.05034 * 20 19 18 37 37 H 1.09001 * 109.47065 * 25.05672 * 20 19 18 38 38 H 1.09000 * 109.47344 * 145.05185 * 20 19 18 39 39 H 1.08992 * 113.61234 * 89.15810 * 21 6 5 40 40 H 1.09000 * 113.61415 * 220.06051 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3136 2.0788 0.3237 5 6 3.3754 1.3720 0.7045 6 6 4.0061 1.0332 -0.6564 7 1 4.1098 -0.0370 -0.8353 8 6 5.2908 1.8114 -0.9474 9 7 5.8567 1.3609 -2.2215 10 6 6.9969 1.9107 -2.6842 11 8 7.5060 2.8445 -2.0929 12 6 7.6243 1.3834 -3.9007 13 6 7.1246 0.3832 -4.7075 14 6 8.0378 0.2023 -5.7510 15 6 7.9093 -0.7864 -6.8809 16 8 8.9526 -1.7582 -6.7845 17 14 6.2557 -1.6381 -6.7759 18 6 9.0613 1.0693 -5.5624 19 7 8.8221 1.7927 -4.4415 20 6 9.6932 2.8369 -3.8964 21 6 2.7537 1.6474 -1.3040 22 1 -0.3634 0.5137 -0.8900 23 1 -0.3633 -1.0278 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 3.5170 0.5959 1.4567 26 1 3.6321 2.3666 1.0692 27 1 5.0652 2.8762 -1.0063 28 1 6.0107 1.6362 -0.1479 29 1 5.4108 0.6671 -2.7319 30 1 6.2010 -0.1573 -4.5621 31 1 7.9881 -0.2620 -7.8332 32 1 8.9441 -2.2640 -5.9604 33 1 5.1627 -0.6352 -6.8430 34 1 6.1170 -2.6163 -7.8846 35 1 9.9269 1.1676 -6.2007 36 1 10.3448 2.4063 -3.1361 37 1 10.2994 3.2593 -4.6978 38 1 9.0834 3.6222 -3.4498 39 1 2.8390 2.7180 -1.4901 40 1 2.3941 1.0934 -2.1710 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12896214_10803934.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 22:21:46 Heat of formation + Delta-G solvation = -32.939542 kcal Electronic energy + Delta-G solvation = -21949.522308 eV Core-core repulsion = 18540.019549 eV Total energy + Delta-G solvation = -3409.502759 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.54574 -40.83330 -39.92697 -37.68280 -37.27585 -35.41501 -33.89578 -31.20271 -28.96567 -28.35107 -27.30604 -26.62162 -25.67667 -24.16179 -22.97251 -21.17740 -20.87266 -20.23311 -19.02920 -17.46115 -17.36207 -17.12153 -16.89771 -16.69433 -16.40343 -16.17037 -15.84633 -15.67830 -15.27736 -15.04364 -14.82366 -14.60465 -14.26086 -14.02090 -13.83628 -13.68509 -13.33880 -13.22615 -13.11133 -12.84717 -12.47059 -12.18380 -11.98474 -11.81744 -11.62467 -11.22815 -11.00902 -10.44803 -10.33920 -10.20114 -9.74457 -9.23943 -4.90923 0.39679 1.44837 1.52831 1.59156 1.78333 2.05909 2.27580 2.33895 2.74560 3.54284 3.60968 3.66778 3.74669 3.81139 3.89358 3.91755 4.05980 4.20821 4.30045 4.32405 4.36774 4.39872 4.55501 4.56639 4.64986 4.66386 4.66677 4.74445 4.77180 4.80277 4.87521 4.91410 5.09374 5.12623 5.20331 5.29592 5.45704 5.67640 5.90983 6.15150 6.30074 6.46903 6.89872 7.11221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.391 6.391 3 C 0.054 3.946 4 H 0.084 0.916 5 C -0.130 4.130 6 C -0.108 4.108 7 H 0.104 0.896 8 C 0.135 3.865 9 N -0.705 5.705 10 C 0.585 3.415 11 O -0.586 6.586 12 C -0.074 4.074 13 C -0.125 4.125 14 C -0.218 4.218 15 C -0.038 4.038 16 O -0.561 6.561 17 Si 0.780 3.220 18 C 0.047 3.953 19 N -0.416 5.416 20 C 0.066 3.934 21 C -0.152 4.152 22 H 0.048 0.952 23 H 0.093 0.907 24 H 0.049 0.951 25 H 0.076 0.924 26 H 0.106 0.894 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.416 0.584 30 H 0.172 0.828 31 H 0.102 0.898 32 H 0.393 0.607 33 H -0.285 1.285 34 H -0.304 1.304 35 H 0.187 0.813 36 H 0.080 0.920 37 H 0.108 0.892 38 H 0.083 0.917 39 H 0.096 0.904 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.736 -1.289 1.859 3.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.310 6.310 3 C -0.004 4.004 4 H 0.101 0.899 5 C -0.168 4.168 6 C -0.126 4.126 7 H 0.123 0.877 8 C 0.012 3.988 9 N -0.356 5.356 10 C 0.373 3.627 11 O -0.468 6.468 12 C -0.187 4.187 13 C -0.151 4.151 14 C -0.224 4.224 15 C -0.148 4.148 16 O -0.369 6.369 17 Si 0.686 3.314 18 C -0.091 4.091 19 N -0.088 5.088 20 C -0.075 4.075 21 C -0.189 4.189 22 H 0.067 0.933 23 H 0.112 0.888 24 H 0.067 0.933 25 H 0.094 0.906 26 H 0.124 0.876 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.253 0.747 30 H 0.189 0.811 31 H 0.120 0.880 32 H 0.243 0.757 33 H -0.212 1.212 34 H -0.233 1.233 35 H 0.204 0.796 36 H 0.099 0.901 37 H 0.127 0.873 38 H 0.102 0.898 39 H 0.114 0.886 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.682 -0.432 1.533 3.119 hybrid contribution 0.094 0.557 -0.512 0.762 sum -2.588 0.126 1.022 2.785 Atomic orbital electron populations 1.22953 0.79710 1.03674 1.00705 1.87839 1.21070 1.27341 1.94721 1.23197 0.94868 0.85149 0.97157 0.89851 1.23205 0.93786 1.03497 0.96304 1.22670 0.91912 1.00533 0.97509 0.87746 1.21414 0.94556 0.98601 0.84250 1.45555 1.24396 1.41753 1.23883 1.17184 0.80903 0.81741 0.82823 1.90784 1.65149 1.29936 1.60964 1.20055 0.92391 1.05536 1.00746 1.21466 1.00876 0.98150 0.94651 1.19875 0.97786 1.03940 1.00845 1.24463 1.02711 0.90787 0.96885 1.86439 1.53031 1.52184 1.45224 0.93756 0.72570 0.78971 0.86070 1.22282 1.01812 0.94830 0.90133 1.44100 1.16211 1.28614 1.19894 1.22344 0.94286 0.89813 1.01039 1.23588 0.95804 1.01745 0.97776 0.93323 0.88816 0.93262 0.90552 0.87560 0.91681 0.91766 0.74728 0.81097 0.88038 0.75701 1.21189 1.23275 0.79596 0.90141 0.87327 0.89790 0.88558 0.90634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.08 10.85 113.37 1.23 1.15 16 2 O -0.39 -0.52 10.63 -148.98 -1.58 -2.11 16 3 C 0.05 -0.12 4.38 31.18 0.14 0.01 16 4 H 0.08 -0.34 7.87 -2.39 -0.02 -0.36 16 5 C -0.13 0.45 7.47 31.12 0.23 0.68 16 6 C -0.11 0.41 3.68 -10.27 -0.04 0.37 16 7 H 0.10 -0.39 8.14 -2.39 -0.02 -0.41 16 8 C 0.13 -0.13 5.50 86.38 0.48 0.34 16 9 N -0.70 0.25 5.54 -467.07 -2.59 -2.34 16 10 C 0.58 3.54 7.78 86.45 0.67 4.21 16 11 O -0.59 -7.50 14.77 -4.33 -0.06 -7.56 16 12 C -0.07 -0.30 6.89 40.35 0.28 -0.03 16 13 C -0.13 0.04 8.84 22.57 0.20 0.24 16 14 C -0.22 -0.10 5.40 -20.12 -0.11 -0.21 16 15 C -0.04 0.02 3.00 71.23 0.21 0.23 16 16 O -0.56 -0.16 12.88 -148.98 -1.92 -2.08 16 17 Si 0.78 -1.74 30.66 68.60 2.10 0.36 16 18 C 0.05 0.05 11.28 83.48 0.94 0.99 16 19 N -0.42 -1.37 3.16 -534.31 -1.69 -3.06 16 20 C 0.07 0.04 10.49 127.77 1.34 1.38 16 21 C -0.15 0.57 7.47 31.18 0.23 0.80 16 22 H 0.05 -0.21 8.14 -2.39 -0.02 -0.23 16 23 H 0.09 -0.42 8.14 -2.38 -0.02 -0.44 16 24 H 0.05 -0.21 8.14 -2.39 -0.02 -0.23 16 25 H 0.08 -0.16 8.14 -2.39 -0.02 -0.18 16 26 H 0.11 -0.58 8.10 -2.38 -0.02 -0.60 16 27 H 0.06 0.05 7.88 -2.38 -0.02 0.03 16 28 H 0.06 0.06 8.14 -2.39 -0.02 0.04 16 29 H 0.42 -2.28 7.37 -92.71 -0.68 -2.96 16 30 H 0.17 -1.11 5.79 -2.91 -0.02 -1.12 16 31 H 0.10 0.07 7.96 -2.39 -0.02 0.05 16 32 H 0.39 -2.86 8.70 -74.06 -0.64 -3.51 16 33 H -0.29 -0.69 7.11 99.48 0.71 0.02 16 34 H -0.30 -1.70 7.11 99.48 0.71 -0.99 16 35 H 0.19 -0.54 8.06 -2.91 -0.02 -0.56 16 36 H 0.08 -0.01 8.14 -2.39 -0.02 -0.03 16 37 H 0.11 -0.52 8.12 -2.39 -0.02 -0.54 16 38 H 0.08 0.39 6.52 -2.39 -0.02 0.37 16 39 H 0.10 -0.44 7.92 -2.39 -0.02 -0.46 16 40 H 0.07 -0.24 8.14 -2.39 -0.02 -0.26 16 Total: 0.00 -18.80 334.29 -0.17 -18.97 By element: Atomic # 1 Polarization: -12.13 SS G_CDS: -0.24 Total: -12.37 kcal Atomic # 6 Polarization: 4.37 SS G_CDS: 5.81 Total: 10.18 kcal Atomic # 7 Polarization: -1.12 SS G_CDS: -4.28 Total: -5.40 kcal Atomic # 8 Polarization: -8.18 SS G_CDS: -3.57 Total: -11.75 kcal Atomic # 14 Polarization: -1.74 SS G_CDS: 2.10 Total: 0.36 kcal Total: -18.80 -0.17 -18.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12896214_10803934.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.968 kcal (2) G-P(sol) polarization free energy of solvation -18.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds