Wall clock time and date at job start Sat Mar 6 2021 22:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42903 * 113.99872 * 2 1 4 4 H 1.09003 * 112.84784 * 341.18871 * 3 2 1 5 5 C 1.53946 * 113.61311 * 112.46451 * 3 2 1 6 6 C 1.53780 * 87.02481 * 89.19758 * 5 3 2 7 7 H 1.08993 * 113.61328 * 270.77321 * 6 5 3 8 8 C 1.52997 * 113.61704 * 139.94955 * 6 5 3 9 9 N 1.46497 * 109.47219 * 85.86469 * 8 6 5 10 10 C 1.34780 * 119.99913 * 179.97438 * 9 8 6 11 11 O 1.21647 * 119.99803 * 0.02562 * 10 9 8 12 12 C 1.47057 * 119.99789 * 179.97438 * 10 9 8 13 13 C 1.35864 * 125.42390 * 180.02562 * 12 10 9 14 14 C 1.41601 * 107.72740 * 179.97438 * 13 12 10 15 15 C 1.40057 * 133.38065 * 180.02562 * 14 13 12 16 16 C 1.36471 * 119.83144 * 179.97438 * 15 14 13 17 17 C 1.38902 * 120.61433 * 359.82954 * 16 15 14 18 18 C 1.50694 * 119.67748 * 180.25099 * 17 16 15 19 19 O 1.42899 * 109.47571 * 120.15155 * 18 17 16 20 20 Si 1.86302 * 109.47232 * 0.14978 * 18 17 16 21 21 C 1.37712 * 120.64825 * 0.40474 * 17 16 15 22 22 C 1.39189 * 119.80618 * 359.54378 * 21 17 16 23 23 N 1.37491 * 133.18705 * 180.23981 * 22 21 17 24 24 C 1.53786 * 113.61156 * 209.99665 * 3 2 1 25 25 H 1.09005 * 109.46859 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47388 * 300.00353 * 1 2 3 27 27 H 1.09006 * 109.46880 * 60.00820 * 1 2 3 28 28 H 1.09000 * 113.67120 * 334.66876 * 5 3 2 29 29 H 1.09002 * 113.61376 * 203.71759 * 5 3 2 30 30 H 1.09000 * 109.47254 * 325.86284 * 8 6 5 31 31 H 1.08999 * 109.47153 * 205.86668 * 8 6 5 32 32 H 0.96999 * 119.99855 * 359.97438 * 9 8 6 33 33 H 1.07994 * 126.14017 * 359.95214 * 13 12 10 34 34 H 1.07999 * 120.08712 * 359.95877 * 15 14 13 35 35 H 1.08002 * 119.70006 * 180.02562 * 16 15 14 36 36 H 1.09010 * 109.47026 * 240.15043 * 18 17 16 37 37 H 0.96698 * 113.99432 * 300.00444 * 19 18 17 38 38 H 1.48492 * 109.99973 * 58.68273 * 20 18 17 39 39 H 1.48499 * 110.00175 * 180.02562 * 20 18 17 40 40 H 1.08002 * 120.09919 * 179.82630 * 21 17 16 41 41 H 0.97000 * 125.60340 * 0.05218 * 23 22 21 42 42 H 1.08993 * 113.61151 * 156.25206 * 24 3 2 43 43 H 1.09000 * 113.61399 * 25.34556 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3137 2.0789 -0.3239 5 6 2.7534 1.6496 1.3035 6 6 4.0063 1.0353 0.6571 7 1 4.1106 -0.0346 0.8374 8 6 5.2905 1.8147 0.9472 9 7 5.8564 1.3664 2.2219 10 6 6.9968 1.9168 2.6836 11 8 7.5558 2.7862 2.0421 12 6 7.5646 1.4672 3.9635 13 6 8.7032 1.9443 4.5308 14 6 8.8993 1.2531 5.7510 15 6 9.8829 1.3180 6.7460 16 6 9.7992 0.5030 7.8374 17 6 8.7443 -0.3902 7.9741 18 6 8.6697 -1.2763 9.1907 19 8 7.4552 -1.0149 9.8968 20 14 10.1225 -0.9269 10.3034 21 6 7.7674 -0.4761 7.0072 22 6 7.8302 0.3455 5.8854 23 7 7.0250 0.4928 4.7807 24 6 3.3756 1.3719 -0.7045 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 2.3940 1.0965 2.1713 29 1 2.8380 2.7205 1.4883 30 1 5.0642 2.8794 1.0045 31 1 6.0106 1.6389 0.1481 32 1 5.4105 0.6735 2.7336 33 1 9.3441 2.7124 4.1239 34 1 10.7055 2.0111 6.6497 35 1 10.5586 0.5551 8.6036 36 1 8.6923 -2.3213 8.8810 37 1 7.3670 -0.1019 10.2029 38 1 10.1210 0.5021 10.7069 39 1 10.0609 -1.7949 11.5067 40 1 6.9526 -1.1757 7.1211 41 1 6.2116 -0.0054 4.6043 42 1 3.6305 2.3666 -1.0697 43 1 3.5177 0.5948 -1.4555 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12896214_13158378.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 22:23:02 Heat of formation + Delta-G solvation = -21.391607 kcal Electronic energy + Delta-G solvation = -25318.935887 eV Core-core repulsion = 21525.255463 eV Total energy + Delta-G solvation = -3793.680424 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.71858 -41.01660 -40.25057 -39.00873 -37.39228 -36.98706 -35.42931 -33.29752 -31.38861 -30.41521 -29.41155 -27.50204 -26.80416 -26.53997 -24.55626 -23.51413 -22.99363 -21.99498 -21.37897 -20.52412 -19.56116 -18.49971 -17.87820 -17.61391 -17.00175 -16.85300 -16.80323 -16.46622 -16.26230 -16.07903 -15.73913 -15.57492 -15.41741 -14.98448 -14.79990 -14.66523 -14.52095 -14.35794 -14.03552 -13.91108 -13.40041 -13.16993 -12.93280 -12.58605 -12.54139 -12.50282 -12.10782 -11.94335 -11.75731 -11.56852 -11.43795 -11.15741 -10.98855 -10.60266 -10.51330 -10.32824 -9.34455 -8.84090 -4.86062 -0.38737 0.52157 0.92642 1.34717 1.66071 1.73225 1.94279 2.02190 2.15294 2.68644 2.75956 3.40583 3.46655 3.52952 3.62742 3.68150 3.72462 3.73993 3.82101 4.03690 4.20811 4.24475 4.28272 4.29931 4.44741 4.49876 4.51072 4.54016 4.59104 4.64935 4.71788 4.74500 4.81789 4.84659 4.87699 4.98337 5.00723 5.09206 5.18641 5.30056 5.36637 5.40173 5.52635 5.57136 5.97260 6.21615 6.24156 6.39926 6.50594 6.90620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.393 6.393 3 C 0.054 3.946 4 H 0.085 0.915 5 C -0.150 4.150 6 C -0.109 4.109 7 H 0.099 0.901 8 C 0.130 3.870 9 N -0.711 5.711 10 C 0.584 3.416 11 O -0.561 6.561 12 C 0.009 3.991 13 C -0.117 4.117 14 C -0.134 4.134 15 C -0.058 4.058 16 C -0.147 4.147 17 C -0.086 4.086 18 C -0.080 4.080 19 O -0.548 6.548 20 Si 0.769 3.231 21 C -0.110 4.110 22 C 0.107 3.893 23 N -0.565 5.565 24 C -0.130 4.130 25 H 0.093 0.907 26 H 0.049 0.951 27 H 0.050 0.950 28 H 0.073 0.927 29 H 0.099 0.901 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.410 0.590 33 H 0.156 0.844 34 H 0.148 0.852 35 H 0.148 0.852 36 H 0.128 0.872 37 H 0.386 0.614 38 H -0.283 1.283 39 H -0.306 1.306 40 H 0.135 0.865 41 H 0.430 0.570 42 H 0.109 0.891 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.387 -1.465 -0.416 2.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.312 6.312 3 C -0.004 4.004 4 H 0.103 0.897 5 C -0.188 4.188 6 C -0.127 4.127 7 H 0.118 0.882 8 C 0.007 3.993 9 N -0.362 5.362 10 C 0.371 3.629 11 O -0.440 6.440 12 C -0.100 4.100 13 C -0.144 4.144 14 C -0.139 4.139 15 C -0.076 4.076 16 C -0.165 4.165 17 C -0.088 4.088 18 C -0.189 4.189 19 O -0.356 6.356 20 Si 0.675 3.325 21 C -0.131 4.131 22 C -0.004 4.004 23 N -0.171 5.171 24 C -0.168 4.168 25 H 0.111 0.889 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.092 0.908 29 H 0.118 0.882 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.246 0.754 33 H 0.174 0.826 34 H 0.166 0.834 35 H 0.165 0.835 36 H 0.145 0.855 37 H 0.236 0.764 38 H -0.209 1.209 39 H -0.234 1.234 40 H 0.152 0.848 41 H 0.271 0.729 42 H 0.127 0.873 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.914 -1.419 -0.368 2.411 hybrid contribution -1.892 0.304 0.286 1.937 sum -3.806 -1.115 -0.082 3.966 Atomic orbital electron populations 1.22959 0.79622 1.03669 1.00799 1.87836 1.21173 1.27451 1.94732 1.23208 0.94921 0.85150 0.97153 0.89667 1.23590 0.95627 1.01872 0.97701 1.22661 0.92049 1.00230 0.97792 0.88241 1.21490 0.94587 0.98910 0.84280 1.45791 1.24710 1.41548 1.24173 1.17303 0.80744 0.81397 0.83484 1.90857 1.61794 1.32626 1.58681 1.19988 0.98447 0.97474 0.94140 1.21111 0.96898 1.01788 0.94642 1.18444 0.97991 1.00226 0.97221 1.20633 0.97232 0.98214 0.91552 1.20692 0.98965 0.97459 0.99415 1.20091 0.95014 0.97590 0.96115 1.25227 0.96292 1.02617 0.94781 1.86567 1.38875 1.35303 1.74891 0.93918 0.83047 0.77370 0.78205 1.19993 1.01128 1.00381 0.91583 1.18462 0.92604 0.99248 0.90075 1.41800 1.24237 1.33925 1.17164 1.23220 0.93759 1.03636 0.96192 0.88882 0.93248 0.93151 0.90786 0.88245 0.91060 0.91514 0.75401 0.82618 0.83408 0.83529 0.85452 0.76450 1.20924 1.23422 0.84752 0.72911 0.87282 0.90643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.08 10.85 113.37 1.23 1.15 16 2 O -0.39 -0.56 10.63 -148.98 -1.58 -2.14 16 3 C 0.05 -0.13 4.38 31.18 0.14 0.00 16 4 H 0.09 -0.38 7.87 -2.39 -0.02 -0.40 16 5 C -0.15 0.66 7.48 31.18 0.23 0.89 16 6 C -0.11 0.44 3.68 -10.27 -0.04 0.40 16 7 H 0.10 -0.35 8.14 -2.39 -0.02 -0.37 16 8 C 0.13 -0.20 5.50 86.38 0.47 0.27 16 9 N -0.71 0.98 5.55 -466.73 -2.59 -1.61 16 10 C 0.58 3.16 7.80 86.56 0.68 3.83 16 11 O -0.56 -7.53 16.84 -4.18 -0.07 -7.60 16 12 C 0.01 0.03 6.97 39.91 0.28 0.31 16 13 C -0.12 -0.62 10.53 22.55 0.24 -0.39 16 14 C -0.13 -0.51 6.16 -21.36 -0.13 -0.64 16 15 C -0.06 -0.02 10.06 22.30 0.22 0.20 16 16 C -0.15 0.21 8.59 22.02 0.19 0.40 16 17 C -0.09 0.06 5.40 -19.83 -0.11 -0.05 16 18 C -0.08 0.15 2.81 71.23 0.20 0.35 16 19 O -0.55 -0.68 12.76 -148.98 -1.90 -2.58 16 20 Si 0.77 -2.12 29.75 68.60 2.04 -0.08 16 21 C -0.11 -0.05 9.61 22.37 0.22 0.16 16 22 C 0.11 0.23 7.25 39.13 0.28 0.51 16 23 N -0.57 0.49 6.07 -177.18 -1.08 -0.58 16 24 C -0.13 0.47 7.48 31.12 0.23 0.70 16 25 H 0.09 -0.41 8.14 -2.38 -0.02 -0.43 16 26 H 0.05 -0.22 8.14 -2.39 -0.02 -0.24 16 27 H 0.05 -0.22 8.14 -2.38 -0.02 -0.24 16 28 H 0.07 -0.28 8.14 -2.39 -0.02 -0.30 16 29 H 0.10 -0.55 7.92 -2.39 -0.02 -0.57 16 30 H 0.07 -0.03 7.87 -2.39 -0.02 -0.04 16 31 H 0.07 0.04 8.14 -2.39 -0.02 0.03 16 32 H 0.41 -2.81 7.53 -92.71 -0.70 -3.51 16 33 H 0.16 0.74 8.06 -2.91 -0.02 0.71 16 34 H 0.15 -0.54 8.06 -2.91 -0.02 -0.57 16 35 H 0.15 -0.83 4.82 -2.91 -0.01 -0.84 16 36 H 0.13 -0.46 7.96 -2.38 -0.02 -0.48 16 37 H 0.39 -1.52 8.70 -74.06 -0.64 -2.17 16 38 H -0.28 -0.32 7.11 99.48 0.71 0.38 16 39 H -0.31 -1.60 7.11 99.48 0.71 -0.90 16 40 H 0.13 -0.21 8.06 -2.91 -0.02 -0.23 16 41 H 0.43 -3.12 8.12 -92.71 -0.75 -3.87 16 42 H 0.11 -0.64 8.10 -2.39 -0.02 -0.66 16 43 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 Total: 0.00 -19.50 360.41 -1.84 -21.34 By element: Atomic # 1 Polarization: -13.86 SS G_CDS: -1.00 Total: -14.86 kcal Atomic # 6 Polarization: 3.78 SS G_CDS: 4.33 Total: 8.11 kcal Atomic # 7 Polarization: 1.48 SS G_CDS: -3.67 Total: -2.19 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: -3.56 Total: -12.32 kcal Atomic # 14 Polarization: -2.12 SS G_CDS: 2.04 Total: -0.08 kcal Total: -19.50 -1.84 -21.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12896214_13158378.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.049 kcal (2) G-P(sol) polarization free energy of solvation -19.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds