Wall clock time and date at job start Sat Mar 6 2021 22:23:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 113.99814 * 2 1 4 4 H 1.08992 * 112.85190 * 341.19499 * 3 2 1 5 5 C 1.53783 * 113.68938 * 112.46903 * 3 2 1 6 6 C 1.53778 * 87.08499 * 89.12477 * 5 3 2 7 7 H 1.08995 * 113.69039 * 270.87690 * 6 5 3 8 8 C 1.52996 * 113.61370 * 139.97665 * 6 5 3 9 9 N 1.46505 * 109.46707 * 87.50526 * 8 6 5 10 10 C 1.34778 * 119.99974 * 179.97438 * 9 8 6 11 11 O 1.21290 * 119.99759 * 0.02562 * 10 9 8 12 12 C 1.50697 * 119.99984 * 180.02562 * 10 9 8 13 13 C 1.50706 * 109.46822 * 180.02562 * 12 10 9 14 14 C 1.38273 * 119.93364 * 90.00163 * 13 12 10 15 15 C 1.38123 * 120.06270 * 180.02562 * 14 13 12 16 16 C 1.38825 * 119.93706 * 359.97438 * 15 14 13 17 17 N 1.40199 * 120.06819 * 179.97438 * 16 15 14 18 18 C 1.36566 * 125.66827 * 310.15449 * 17 16 15 19 19 C 1.34855 * 108.20020 * 180.29869 * 18 17 16 20 20 C 1.40937 * 107.46688 * 359.73745 * 19 18 17 21 21 C 1.34851 * 107.47041 * 0.02562 * 20 19 18 22 22 C 1.50696 * 125.90145 * 179.97438 * 21 20 19 23 23 O 1.42903 * 109.47131 * 150.02340 * 22 21 20 24 24 Si 1.86305 * 109.47185 * 30.02881 * 22 21 20 25 25 C 1.38832 * 119.86729 * 0.25509 * 16 15 14 26 26 C 1.38122 * 119.93024 * 359.49119 * 25 16 15 27 27 C 1.53782 * 113.61223 * 209.99870 * 3 2 1 28 28 H 1.08997 * 109.46893 * 60.00438 * 1 2 3 29 29 H 1.09005 * 109.46752 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47308 * 299.99725 * 1 2 3 31 31 H 1.09002 * 113.61421 * 334.57183 * 5 3 2 32 32 H 1.09001 * 113.61148 * 203.68057 * 5 3 2 33 33 H 1.08996 * 109.47538 * 327.50775 * 8 6 5 34 34 H 1.08998 * 109.47498 * 207.50070 * 8 6 5 35 35 H 0.96994 * 120.00305 * 0.02562 * 9 8 6 36 36 H 1.08991 * 109.47100 * 60.00558 * 12 10 9 37 37 H 1.09004 * 109.46901 * 299.99523 * 12 10 9 38 38 H 1.07995 * 119.97405 * 359.97438 * 14 13 12 39 39 H 1.08005 * 120.03489 * 179.97438 * 15 14 13 40 40 H 1.07998 * 125.90337 * 0.03519 * 18 17 16 41 41 H 1.07995 * 126.26632 * 179.73820 * 19 18 17 42 42 H 1.07994 * 126.26762 * 180.02562 * 20 19 18 43 43 H 1.08999 * 109.47358 * 270.02700 * 22 21 20 44 44 H 0.96700 * 114.00311 * 300.00591 * 23 22 21 45 45 H 1.48499 * 109.99670 * 58.67633 * 24 22 21 46 46 H 1.48497 * 110.00233 * 179.97438 * 24 22 21 47 47 H 1.07998 * 120.03339 * 179.72044 * 25 16 15 48 48 H 1.08007 * 119.96544 * 180.25120 * 26 25 16 49 49 H 1.09003 * 113.61239 * 156.24957 * 27 3 2 50 50 H 1.09000 * 113.61692 * 25.35316 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3138 2.0789 -0.3238 5 6 2.7532 1.6511 1.3013 6 6 4.0063 1.0353 0.6570 7 1 4.1106 -0.0346 0.8372 8 6 5.2905 1.8147 0.9470 9 7 5.8761 1.3408 2.2035 10 6 7.0200 1.8867 2.6620 11 8 7.5642 2.7705 2.0345 12 6 7.6226 1.3988 3.9541 13 6 8.8875 2.1667 4.2398 14 6 8.8334 3.3366 4.9750 15 6 9.9910 4.0427 5.2380 16 6 11.2097 3.5766 4.7639 17 7 12.3863 4.2915 5.0287 18 6 12.5680 5.6296 4.8250 19 6 13.8272 5.9442 5.1910 20 6 14.4447 4.7605 5.6426 21 6 13.5404 3.7659 5.5355 22 6 13.7664 2.3226 5.9054 23 8 12.5313 1.7397 6.3261 24 14 15.0044 2.2238 7.2940 25 6 11.2602 2.4042 4.0220 26 6 10.1000 1.6996 3.7667 27 6 3.3755 1.3719 -0.7045 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8899 31 1 2.3927 1.0994 2.1696 32 1 2.8378 2.7222 1.4845 33 1 5.0598 2.8766 1.0314 34 1 6.0005 1.6606 0.1344 35 1 5.4411 0.6338 2.7051 36 1 7.8532 0.3369 3.8694 37 1 6.9130 1.5530 4.7670 38 1 7.8850 3.6990 5.3432 39 1 9.9481 4.9567 5.8119 40 1 11.8319 6.3164 4.4340 41 1 14.2796 6.9238 5.1463 42 1 15.4568 4.6671 6.0076 43 1 14.1475 1.7810 5.0396 44 1 12.1337 2.1723 7.0942 45 1 14.5108 2.9852 8.4696 46 1 15.2355 0.8056 7.6686 47 1 12.2063 2.0416 3.6480 48 1 10.1392 0.7854 3.1930 49 1 3.6304 2.3668 -1.0698 50 1 3.5176 0.5949 -1.4557 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12896214_13287746.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 22:23:31 Heat of formation + Delta-G solvation = 3.869245 kcal Electronic energy + Delta-G solvation = -30701.369859 eV Core-core repulsion = 26469.483449 eV Total energy + Delta-G solvation = -4231.886410 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 357.177 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.71224 -41.19765 -40.50625 -39.57440 -37.86292 -37.33476 -35.21269 -34.86111 -32.18033 -31.96069 -31.04933 -29.48045 -27.70954 -27.10401 -26.62478 -26.07293 -24.00551 -23.88417 -23.03944 -21.60287 -21.35956 -20.67211 -20.39835 -19.33195 -18.25503 -17.68296 -17.46984 -17.13818 -17.04883 -16.60495 -16.46108 -16.24681 -16.10385 -15.92074 -15.83062 -15.32613 -15.25192 -14.79883 -14.77827 -14.51656 -14.41324 -14.26723 -14.15750 -13.94780 -13.93179 -13.38755 -13.30417 -13.18458 -13.02980 -12.82648 -12.63644 -12.50716 -12.40994 -12.12085 -11.94540 -11.86171 -11.66501 -11.25207 -10.98905 -10.90413 -10.49510 -10.31109 -10.10914 -9.99775 -9.16669 -9.04655 -4.90392 -0.02899 0.33459 1.06036 1.40343 1.61869 1.65700 1.82872 1.99265 2.10658 2.17312 2.69854 2.71715 3.23172 3.53920 3.58424 3.60597 3.66159 3.73790 3.75818 3.85956 3.86505 4.02987 4.12581 4.19606 4.25373 4.30160 4.33396 4.47207 4.50362 4.51814 4.52886 4.53726 4.61376 4.62758 4.65607 4.74475 4.75737 4.82998 4.83734 4.86602 4.94453 5.05363 5.17105 5.17451 5.19671 5.27259 5.27866 5.36523 5.47834 5.48454 5.77240 5.93484 6.18810 6.25579 6.35200 6.48387 6.53448 7.24280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.393 6.393 3 C 0.054 3.946 4 H 0.084 0.916 5 C -0.148 4.148 6 C -0.107 4.107 7 H 0.100 0.900 8 C 0.132 3.868 9 N -0.718 5.718 10 C 0.511 3.489 11 O -0.582 6.582 12 C -0.098 4.098 13 C -0.068 4.068 14 C -0.098 4.098 15 C -0.128 4.128 16 C 0.112 3.888 17 N -0.398 5.398 18 C -0.025 4.025 19 C -0.198 4.198 20 C -0.192 4.192 21 C -0.028 4.028 22 C -0.060 4.060 23 O -0.537 6.537 24 Si 0.803 3.197 25 C -0.095 4.095 26 C -0.100 4.100 27 C -0.134 4.134 28 H 0.049 0.951 29 H 0.093 0.907 30 H 0.050 0.950 31 H 0.076 0.924 32 H 0.098 0.902 33 H 0.061 0.939 34 H 0.055 0.945 35 H 0.417 0.583 36 H 0.130 0.870 37 H 0.133 0.867 38 H 0.145 0.855 39 H 0.132 0.868 40 H 0.171 0.829 41 H 0.157 0.843 42 H 0.173 0.827 43 H 0.123 0.877 44 H 0.378 0.622 45 H -0.295 1.295 46 H -0.293 1.293 47 H 0.119 0.881 48 H 0.137 0.863 49 H 0.105 0.895 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.060 -1.549 1.250 4.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.312 6.312 3 C -0.004 4.004 4 H 0.102 0.898 5 C -0.185 4.185 6 C -0.125 4.125 7 H 0.119 0.881 8 C 0.008 3.992 9 N -0.371 5.371 10 C 0.299 3.701 11 O -0.462 6.462 12 C -0.137 4.137 13 C -0.068 4.068 14 C -0.116 4.116 15 C -0.148 4.148 16 C 0.022 3.978 17 N -0.072 5.072 18 C -0.153 4.153 19 C -0.222 4.222 20 C -0.216 4.216 21 C -0.137 4.137 22 C -0.168 4.168 23 O -0.344 6.344 24 Si 0.706 3.294 25 C -0.115 4.115 26 C -0.118 4.118 27 C -0.172 4.172 28 H 0.068 0.932 29 H 0.112 0.888 30 H 0.068 0.932 31 H 0.094 0.906 32 H 0.116 0.884 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.253 0.747 36 H 0.148 0.852 37 H 0.151 0.849 38 H 0.162 0.838 39 H 0.150 0.850 40 H 0.188 0.812 41 H 0.174 0.826 42 H 0.190 0.810 43 H 0.141 0.859 44 H 0.226 0.774 45 H -0.222 1.222 46 H -0.220 1.220 47 H 0.137 0.863 48 H 0.155 0.845 49 H 0.123 0.877 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.595 -1.903 1.028 4.196 hybrid contribution -1.563 0.194 0.250 1.595 sum -5.158 -1.709 1.277 5.582 Atomic orbital electron populations 1.22961 0.79602 1.03696 1.00794 1.87837 1.21196 1.27388 1.94742 1.23168 0.94808 0.85147 0.97318 0.89792 1.23533 0.95541 1.01763 0.97670 1.22640 0.92227 1.00289 0.97373 0.88149 1.21315 0.94037 0.98122 0.85704 1.45936 1.25164 1.40881 1.25096 1.21003 0.80367 0.81514 0.87231 1.90746 1.62465 1.32532 1.60445 1.20751 0.95159 1.02155 0.95610 1.19568 0.94398 0.95625 0.97237 1.21066 0.98257 0.94123 0.98179 1.21119 0.91325 1.01292 1.01028 1.17807 0.85213 0.94463 1.00317 1.41575 1.09414 1.07606 1.48576 1.22317 1.00219 0.83862 1.08867 1.21241 0.94128 0.99908 1.06966 1.21066 1.00488 0.91744 1.08339 1.21301 0.87509 0.97024 1.07902 1.25061 0.93961 0.88392 1.09386 1.86594 1.36659 1.59508 1.51601 0.93480 0.84293 0.77564 0.74040 1.20896 0.99114 0.94420 0.97038 1.21041 0.91462 1.00236 0.99074 1.23235 0.94100 1.03351 0.96489 0.93244 0.88829 0.93159 0.90558 0.88397 0.92041 0.92697 0.74658 0.85248 0.84863 0.83752 0.84991 0.81190 0.82563 0.81024 0.85891 0.77404 1.22162 1.22046 0.86323 0.84506 0.87685 0.90836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.07 10.85 113.37 1.23 1.16 16 2 O -0.39 -0.71 10.64 -148.98 -1.58 -2.30 16 3 C 0.05 -0.10 4.37 31.12 0.14 0.03 16 4 H 0.08 -0.32 7.87 -2.39 -0.02 -0.34 16 5 C -0.15 0.59 7.46 31.12 0.23 0.82 16 6 C -0.11 0.36 3.69 -10.27 -0.04 0.32 16 7 H 0.10 -0.30 8.14 -2.39 -0.02 -0.32 16 8 C 0.13 -0.10 5.51 86.38 0.48 0.37 16 9 N -0.72 1.97 5.56 -463.06 -2.57 -0.61 16 10 C 0.51 1.16 7.82 87.66 0.69 1.85 16 11 O -0.58 -7.41 16.03 -3.06 -0.05 -7.46 16 12 C -0.10 0.38 5.83 29.10 0.17 0.55 16 13 C -0.07 -0.16 4.37 -19.85 -0.09 -0.25 16 14 C -0.10 -0.27 9.69 22.25 0.22 -0.05 16 15 C -0.13 -0.63 9.66 22.38 0.22 -0.41 16 16 C 0.11 0.79 4.89 38.08 0.19 0.98 16 17 N -0.40 -2.84 2.87 -333.41 -0.96 -3.80 16 18 C -0.03 -0.16 11.12 83.18 0.92 0.77 16 19 C -0.20 -0.89 10.86 22.15 0.24 -0.65 16 20 C -0.19 -0.63 9.43 22.15 0.21 -0.42 16 21 C -0.03 -0.14 6.02 41.04 0.25 0.11 16 22 C -0.06 -0.12 2.28 71.23 0.16 0.04 16 23 O -0.54 -2.33 9.89 -148.98 -1.47 -3.80 16 24 Si 0.80 -0.34 31.14 68.60 2.14 1.80 16 25 C -0.10 -0.66 7.68 22.38 0.17 -0.49 16 26 C -0.10 -0.45 9.69 22.25 0.22 -0.23 16 27 C -0.13 0.33 7.47 31.12 0.23 0.57 16 28 H 0.05 -0.20 8.14 -2.39 -0.02 -0.22 16 29 H 0.09 -0.41 8.14 -2.38 -0.02 -0.43 16 30 H 0.05 -0.22 8.14 -2.39 -0.02 -0.24 16 31 H 0.08 -0.29 8.14 -2.39 -0.02 -0.31 16 32 H 0.10 -0.49 7.90 -2.39 -0.02 -0.51 16 33 H 0.06 0.07 7.84 -2.39 -0.02 0.05 16 34 H 0.05 0.14 8.14 -2.39 -0.02 0.12 16 35 H 0.42 -3.63 8.47 -92.71 -0.79 -4.41 16 36 H 0.13 -1.10 8.08 -2.39 -0.02 -1.12 16 37 H 0.13 -1.26 8.08 -2.39 -0.02 -1.28 16 38 H 0.14 -0.23 8.06 -2.91 -0.02 -0.25 16 39 H 0.13 0.38 8.06 -2.91 -0.02 0.36 16 40 H 0.17 0.54 8.06 -2.91 -0.02 0.51 16 41 H 0.16 0.09 8.06 -2.91 -0.02 0.07 16 42 H 0.17 -0.49 6.89 -2.91 -0.02 -0.51 16 43 H 0.12 0.05 7.96 -2.39 -0.02 0.03 16 44 H 0.38 0.58 8.70 -74.06 -0.64 -0.06 16 45 H -0.29 -1.63 7.11 99.48 0.71 -0.93 16 46 H -0.29 -1.65 7.11 99.48 0.71 -0.94 16 47 H 0.12 0.84 7.67 -2.91 -0.02 0.82 16 48 H 0.14 0.18 8.06 -2.91 -0.02 0.16 16 49 H 0.10 -0.46 8.10 -2.39 -0.02 -0.47 16 50 H 0.07 -0.06 8.14 -2.39 -0.02 -0.08 16 Total: 0.00 -22.28 413.89 0.88 -21.40 By element: Atomic # 1 Polarization: -9.86 SS G_CDS: -0.44 Total: -10.30 kcal Atomic # 6 Polarization: -0.76 SS G_CDS: 5.83 Total: 5.06 kcal Atomic # 7 Polarization: -0.88 SS G_CDS: -3.53 Total: -4.41 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: -3.11 Total: -13.56 kcal Atomic # 14 Polarization: -0.34 SS G_CDS: 2.14 Total: 1.80 kcal Total: -22.28 0.88 -21.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12896214_13287746.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.270 kcal (2) G-P(sol) polarization free energy of solvation -22.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds