Wall clock time and date at job start Sat Mar 6 2021 22:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42908 * 113.99593 * 2 1 4 4 H 1.08999 * 112.85196 * 18.80485 * 3 2 1 5 5 C 1.53784 * 113.61299 * 150.00357 * 3 2 1 6 6 C 1.53778 * 87.08064 * 89.19433 * 5 3 2 7 7 H 1.08994 * 113.62208 * 270.80052 * 6 5 3 8 8 C 1.52999 * 113.60984 * 139.97964 * 6 5 3 9 9 N 1.46501 * 109.47356 * 175.00484 * 8 6 5 10 10 C 1.34771 * 120.00317 * 180.02562 * 9 8 6 11 11 O 1.21284 * 120.00280 * 359.97438 * 10 9 8 12 12 C 1.50697 * 120.00225 * 179.97438 * 10 9 8 13 13 C 1.53007 * 109.47487 * 179.97438 * 12 10 9 14 14 O 1.42901 * 109.47241 * 180.02562 * 13 12 10 15 15 C 1.35896 * 117.00049 * 180.02562 * 14 13 12 16 16 C 1.38707 * 120.05728 * 180.02562 * 15 14 13 17 17 C 1.38171 * 119.94458 * 180.02562 * 16 15 14 18 18 C 1.50696 * 119.97102 * 179.97438 * 17 16 15 19 19 O 1.42901 * 109.47498 * 300.02364 * 18 17 16 20 20 Si 1.86302 * 109.47091 * 180.02562 * 18 17 16 21 21 C 1.38241 * 120.05235 * 0.02562 * 17 16 15 22 22 C 1.38288 * 120.11556 * 359.95131 * 21 17 16 23 23 C 1.38119 * 120.05366 * 0.28328 * 22 21 17 24 24 C 1.53776 * 113.68777 * 247.53563 * 3 2 1 25 25 H 1.09003 * 109.47196 * 299.99563 * 1 2 3 26 26 H 1.08997 * 109.47631 * 60.00286 * 1 2 3 27 27 H 1.09005 * 109.47178 * 180.02562 * 1 2 3 28 28 H 1.09005 * 113.61005 * 334.65077 * 5 3 2 29 29 H 1.08996 * 113.61153 * 203.75145 * 5 3 2 30 30 H 1.08997 * 109.47315 * 55.00286 * 8 6 5 31 31 H 1.09008 * 109.47502 * 295.00147 * 8 6 5 32 32 H 0.97003 * 119.99670 * 359.97438 * 9 8 6 33 33 H 1.09006 * 109.47074 * 60.00278 * 12 10 9 34 34 H 1.09000 * 109.47545 * 300.00295 * 12 10 9 35 35 H 1.08997 * 109.46749 * 59.99873 * 13 12 10 36 36 H 1.09003 * 109.46719 * 300.00066 * 13 12 10 37 37 H 1.07997 * 120.02743 * 0.02562 * 16 15 14 38 38 H 1.09000 * 109.47091 * 60.02055 * 18 17 16 39 39 H 0.96702 * 114.00009 * 179.97438 * 19 18 17 40 40 H 1.48497 * 109.99762 * 60.00161 * 20 18 17 41 41 H 1.48499 * 110.00121 * 181.31873 * 20 18 17 42 42 H 1.08006 * 119.93966 * 179.97438 * 21 17 16 43 43 H 1.08002 * 119.96980 * 179.97438 * 22 21 17 44 44 H 1.07998 * 120.02956 * 179.72220 * 23 22 21 45 45 H 1.09000 * 113.61455 * 156.32643 * 24 3 2 46 46 H 1.09003 * 113.62090 * 25.42406 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 1 1.3136 2.0790 0.3238 5 6 3.3755 1.3720 0.7045 6 6 4.0062 1.0353 -0.6570 7 1 4.1106 -0.0345 -0.8374 8 6 5.2904 1.8148 -0.9471 9 7 5.8760 1.3411 -2.2036 10 6 7.0197 1.8869 -2.6621 11 8 7.5641 2.7707 -2.0347 12 6 7.6224 1.3992 -3.9543 13 6 8.9066 2.1788 -4.2445 14 8 9.4777 1.7166 -5.4702 15 6 10.6314 2.3096 -5.8755 16 6 11.2401 1.9104 -7.0562 17 6 12.4134 2.5145 -7.4658 18 6 13.0755 2.0809 -8.7482 19 8 13.4107 0.6942 -8.6661 20 14 14.6254 3.0795 -9.0153 21 6 12.9808 3.5155 -6.6996 22 6 12.3756 3.9155 -5.5223 23 6 11.2054 3.3115 -5.1060 24 6 2.7530 1.6512 -1.3013 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 3.5176 0.5949 1.4556 29 1 3.6303 2.3669 1.0698 30 1 6.0003 1.6607 -0.1345 31 1 5.0597 2.8768 -1.0315 32 1 5.4408 0.6340 -2.7052 33 1 6.9127 1.5534 -4.7672 34 1 7.8529 0.3372 -3.8698 35 1 9.6164 2.0250 -3.4317 36 1 8.6757 3.2407 -4.3293 37 1 10.7974 1.1282 -7.6549 38 1 12.3920 2.2407 -9.5821 39 1 13.8410 0.3460 -9.4590 40 1 15.5655 2.8702 -7.8851 41 1 15.2708 2.6837 -10.2928 42 1 13.8981 3.9861 -7.0213 43 1 12.8212 4.6975 -4.9253 44 1 10.7355 3.6212 -4.1842 45 1 2.8377 2.7223 -1.4845 46 1 2.3926 1.0995 -2.1697 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12896214_4549614.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 22:24:34 Heat of formation + Delta-G solvation = -96.546151 kcal Electronic energy + Delta-G solvation = -25738.696616 eV Core-core repulsion = 21789.415627 eV Total energy + Delta-G solvation = -3949.280989 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 322.166 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.42307 -41.01045 -40.30811 -39.07391 -37.47982 -37.33149 -35.27552 -33.36917 -32.60726 -30.96367 -29.22306 -27.42361 -26.98634 -26.65786 -25.25562 -23.66977 -23.43104 -21.99542 -21.48531 -20.40397 -19.18150 -18.57198 -17.99934 -17.64034 -17.52620 -17.26540 -17.04732 -16.80254 -16.55819 -16.34255 -15.99363 -15.81955 -15.67760 -15.22516 -14.74089 -14.55186 -14.46863 -14.32494 -14.18059 -13.94261 -13.75075 -13.46692 -13.37359 -12.97438 -12.94194 -12.83996 -12.50792 -12.36107 -12.02692 -11.86626 -11.82369 -11.68952 -11.66837 -11.26409 -10.98447 -10.57305 -10.48629 -10.15644 -9.90632 -9.28186 -4.91129 0.18679 0.38250 1.28455 1.50630 1.61271 1.70921 1.96112 2.48670 2.61962 2.70904 3.36061 3.51705 3.56407 3.60280 3.75365 3.77207 3.84015 3.86339 3.87927 4.00036 4.10062 4.22784 4.25271 4.25709 4.32283 4.36041 4.48009 4.52462 4.53538 4.61250 4.61872 4.67781 4.74913 4.75698 4.76855 4.84066 4.87406 4.97009 5.06149 5.17102 5.23920 5.26852 5.36805 5.44263 5.44407 5.68417 6.26467 6.31552 6.44069 6.58152 7.12829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.393 6.393 3 C 0.053 3.947 4 H 0.085 0.915 5 C -0.132 4.132 6 C -0.108 4.108 7 H 0.099 0.901 8 C 0.131 3.869 9 N -0.715 5.715 10 C 0.518 3.482 11 O -0.585 6.585 12 C -0.133 4.133 13 C 0.074 3.926 14 O -0.324 6.324 15 C 0.116 3.884 16 C -0.142 4.142 17 C -0.048 4.048 18 C -0.090 4.090 19 O -0.559 6.559 20 Si 0.772 3.228 21 C -0.159 4.159 22 C -0.075 4.075 23 C -0.212 4.212 24 C -0.149 4.149 25 H 0.049 0.951 26 H 0.050 0.950 27 H 0.093 0.907 28 H 0.073 0.927 29 H 0.107 0.893 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.417 0.583 33 H 0.127 0.873 34 H 0.124 0.876 35 H 0.063 0.937 36 H 0.068 0.932 37 H 0.128 0.872 38 H 0.097 0.903 39 H 0.396 0.604 40 H -0.299 1.299 41 H -0.283 1.283 42 H 0.147 0.853 43 H 0.155 0.845 44 H 0.139 0.861 45 H 0.099 0.901 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.780 1.566 -1.819 5.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.312 6.312 3 C -0.005 4.005 4 H 0.103 0.897 5 C -0.170 4.170 6 C -0.127 4.127 7 H 0.118 0.882 8 C 0.007 3.993 9 N -0.367 5.367 10 C 0.306 3.694 11 O -0.465 6.465 12 C -0.172 4.172 13 C -0.001 4.001 14 O -0.238 6.238 15 C 0.071 3.929 16 C -0.161 4.161 17 C -0.048 4.048 18 C -0.198 4.198 19 O -0.369 6.369 20 Si 0.677 3.323 21 C -0.177 4.177 22 C -0.092 4.092 23 C -0.230 4.230 24 C -0.186 4.186 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.111 0.889 28 H 0.092 0.908 29 H 0.125 0.875 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.254 0.746 33 H 0.145 0.855 34 H 0.142 0.858 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.146 0.854 38 H 0.115 0.885 39 H 0.246 0.754 40 H -0.227 1.227 41 H -0.210 1.210 42 H 0.164 0.836 43 H 0.173 0.827 44 H 0.156 0.844 45 H 0.118 0.882 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.856 1.906 -0.973 4.410 hybrid contribution -0.355 -1.360 -0.272 1.431 sum -4.210 0.546 -1.245 4.424 Atomic orbital electron populations 1.22959 0.79610 1.03676 1.00804 1.87838 1.21196 1.27450 1.94745 1.23179 0.94875 0.85135 0.97313 0.89714 1.23231 0.93964 1.03459 0.96367 1.22653 0.92248 1.00281 0.97516 0.88247 1.21385 0.94117 0.98350 0.85440 1.45890 1.24893 1.40696 1.25203 1.20609 0.80651 0.81432 0.86743 1.90734 1.62586 1.32630 1.60600 1.21435 0.96821 1.03149 0.95837 1.22446 0.94722 0.98858 0.84122 1.85946 1.36446 1.60466 1.40954 1.19127 0.86424 0.93107 0.94232 1.20317 0.96921 1.02682 0.96151 1.19311 0.93888 0.95791 0.95817 1.25118 1.09364 0.87758 0.97570 1.86551 1.81800 1.23245 1.45302 0.94007 0.73881 0.88229 0.76205 1.21132 1.01368 0.99203 0.95953 1.21236 0.93757 0.98687 0.95562 1.21557 0.99644 0.99733 1.02113 1.23547 0.95566 1.01839 0.97664 0.93195 0.93178 0.88878 0.90826 0.87464 0.92241 0.91583 0.74582 0.85463 0.85822 0.91867 0.91362 0.85378 0.88494 0.75374 1.22666 1.21050 0.83611 0.82699 0.84357 0.88239 0.90696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.07 10.85 113.37 1.23 1.16 16 2 O -0.39 -0.75 10.64 -148.98 -1.58 -2.33 16 3 C 0.05 -0.11 4.37 31.12 0.14 0.03 16 4 H 0.08 -0.35 7.87 -2.39 -0.02 -0.36 16 5 C -0.13 0.39 7.47 31.12 0.23 0.62 16 6 C -0.11 0.39 3.69 -10.27 -0.04 0.35 16 7 H 0.10 -0.28 8.14 -2.39 -0.02 -0.30 16 8 C 0.13 -0.18 5.51 86.38 0.48 0.30 16 9 N -0.71 1.86 5.56 -463.06 -2.57 -0.71 16 10 C 0.52 1.13 7.83 87.66 0.69 1.82 16 11 O -0.58 -6.47 15.98 -3.04 -0.05 -6.52 16 12 C -0.13 0.31 6.07 29.85 0.18 0.49 16 13 C 0.07 0.22 4.03 71.98 0.29 0.51 16 14 O -0.32 -2.07 10.14 -92.38 -0.94 -3.01 16 15 C 0.12 0.88 6.69 22.51 0.15 1.03 16 16 C -0.14 -1.08 9.55 22.37 0.21 -0.86 16 17 C -0.05 -0.25 5.42 -19.88 -0.11 -0.35 16 18 C -0.09 -0.11 2.81 71.23 0.20 0.09 16 19 O -0.56 -2.28 12.74 -148.98 -1.90 -4.18 16 20 Si 0.77 -0.92 29.79 68.60 2.04 1.13 16 21 C -0.16 -0.46 8.67 22.28 0.19 -0.26 16 22 C -0.07 -0.19 10.04 22.25 0.22 0.03 16 23 C -0.21 -1.09 9.04 22.37 0.20 -0.89 16 24 C -0.15 0.60 7.46 31.12 0.23 0.83 16 25 H 0.05 -0.21 8.14 -2.39 -0.02 -0.22 16 26 H 0.05 -0.21 8.14 -2.39 -0.02 -0.23 16 27 H 0.09 -0.39 8.14 -2.38 -0.02 -0.41 16 28 H 0.07 -0.08 8.14 -2.38 -0.02 -0.10 16 29 H 0.11 -0.55 8.10 -2.39 -0.02 -0.57 16 30 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 31 H 0.07 0.00 7.84 -2.38 -0.02 -0.02 16 32 H 0.42 -3.35 8.47 -92.71 -0.79 -4.13 16 33 H 0.13 -0.79 8.14 -2.38 -0.02 -0.81 16 34 H 0.12 -0.68 8.14 -2.39 -0.02 -0.70 16 35 H 0.06 0.29 7.60 -2.39 -0.02 0.27 16 36 H 0.07 0.25 7.63 -2.39 -0.02 0.23 16 37 H 0.13 0.93 8.06 -2.91 -0.02 0.91 16 38 H 0.10 -0.27 7.96 -2.39 -0.02 -0.29 16 39 H 0.40 -1.77 8.74 -74.06 -0.65 -2.42 16 40 H -0.30 -1.85 7.11 99.48 0.71 -1.15 16 41 H -0.28 -0.68 7.11 99.48 0.71 0.03 16 42 H 0.15 -0.24 4.87 -2.91 -0.01 -0.26 16 43 H 0.16 -0.45 8.06 -2.91 -0.02 -0.47 16 44 H 0.14 0.45 6.30 -2.91 -0.02 0.43 16 45 H 0.10 -0.53 7.90 -2.39 -0.02 -0.55 16 46 H 0.07 -0.26 8.14 -2.39 -0.02 -0.28 16 Total: 0.00 -21.20 381.25 -0.90 -22.10 By element: Atomic # 1 Polarization: -10.95 SS G_CDS: -0.40 Total: -11.35 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: 4.50 Total: 4.88 kcal Atomic # 7 Polarization: 1.86 SS G_CDS: -2.57 Total: -0.71 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: -4.47 Total: -16.05 kcal Atomic # 14 Polarization: -0.92 SS G_CDS: 2.04 Total: 1.13 kcal Total: -21.20 -0.90 -22.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12896214_4549614.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.443 kcal (2) G-P(sol) polarization free energy of solvation -21.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds