Wall clock time and date at job start Sat Mar 6 2021 22:25:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42896 * 114.00121 * 2 1 4 4 H 1.08993 * 112.91177 * 341.25070 * 3 2 1 5 5 C 1.53778 * 113.61445 * 112.50307 * 3 2 1 6 6 C 1.53778 * 87.08449 * 89.11333 * 5 3 2 7 7 H 1.08998 * 113.61879 * 270.88747 * 6 5 3 8 8 C 1.53001 * 113.69389 * 139.99094 * 6 5 3 9 9 N 1.46498 * 109.46735 * 87.46692 * 8 6 5 10 10 C 1.34778 * 119.99710 * 180.02562 * 9 8 6 11 11 O 1.21288 * 120.00002 * 0.02562 * 10 9 8 12 12 C 1.50700 * 120.00252 * 179.97438 * 10 9 8 13 13 O 1.42896 * 109.47371 * 179.97438 * 12 10 9 14 14 C 1.35901 * 117.00149 * 180.02562 * 13 12 10 15 15 C 1.38716 * 120.05825 * 179.73207 * 14 13 12 16 16 C 1.38158 * 119.94482 * 179.72192 * 15 14 13 17 17 C 1.50698 * 119.97630 * 180.27033 * 16 15 14 18 18 O 1.42901 * 109.47196 * 300.29953 * 17 16 15 19 19 Si 1.86298 * 109.47596 * 180.29912 * 17 16 15 20 20 C 1.38248 * 120.05478 * 0.57445 * 16 15 14 21 21 C 1.38284 * 120.10968 * 359.67431 * 20 16 15 22 22 C 1.38122 * 120.05951 * 0.05068 * 21 20 16 23 23 C 1.53784 * 113.61245 * 209.99902 * 3 2 1 24 24 H 1.08996 * 109.47543 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47114 * 300.00404 * 1 2 3 26 26 H 1.09002 * 109.47087 * 59.99885 * 1 2 3 27 27 H 1.08999 * 113.61526 * 334.56668 * 5 3 2 28 28 H 1.08999 * 113.69218 * 203.67292 * 5 3 2 29 29 H 1.08997 * 109.47307 * 207.46880 * 8 6 5 30 30 H 1.09003 * 109.47172 * 327.46784 * 8 6 5 31 31 H 0.96995 * 120.00713 * 359.97438 * 9 8 6 32 32 H 1.08997 * 109.47256 * 300.00272 * 12 10 9 33 33 H 1.09003 * 109.46794 * 59.99914 * 12 10 9 34 34 H 1.08001 * 120.02514 * 359.97438 * 15 14 13 35 35 H 1.08999 * 109.46796 * 60.29801 * 17 16 15 36 36 H 0.96698 * 114.00296 * 299.99742 * 18 17 16 37 37 H 1.48498 * 109.99816 * 58.67971 * 19 17 16 38 38 H 1.48495 * 110.00004 * 180.02562 * 19 17 16 39 39 H 1.08004 * 119.94634 * 179.70648 * 20 16 15 40 40 H 1.08004 * 119.97279 * 180.02562 * 21 20 16 41 41 H 1.08004 * 120.02865 * 179.97438 * 22 21 20 42 42 H 1.09004 * 113.61451 * 156.33817 * 23 3 2 43 43 H 1.08994 * 113.61477 * 25.43119 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3144 2.0797 -0.3227 5 6 2.7535 1.6488 1.3017 6 6 4.0062 1.0329 0.6566 7 1 4.1085 -0.0373 0.8360 8 6 5.2921 1.8095 0.9466 9 7 5.8771 1.3335 2.2026 10 6 7.0217 1.8774 2.6615 11 8 7.5671 2.7612 2.0349 12 6 7.6234 1.3883 3.9537 13 8 8.8245 2.1135 4.2246 14 6 9.4962 1.7921 5.3614 15 6 10.6728 2.4525 5.6835 16 6 11.3507 2.1279 6.8427 17 6 12.6258 2.8491 7.1963 18 8 13.5888 2.6504 6.1594 19 14 13.2940 2.1789 8.8010 20 6 10.8638 1.1376 7.6754 21 6 9.6938 0.4743 7.3540 22 6 9.0092 0.7990 6.1991 23 6 3.3756 1.3718 -0.7045 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 2.3927 1.0963 2.1693 28 1 2.8396 2.7194 1.4876 29 1 6.0014 1.6545 0.1337 30 1 5.0636 2.8719 1.0319 31 1 5.4405 0.6276 2.7043 32 1 6.9138 1.5433 4.7665 33 1 7.8521 0.3259 3.8688 34 1 11.0564 3.2226 5.0306 35 1 12.4226 3.9146 7.3041 36 1 13.8181 1.7233 6.0079 37 1 13.5451 0.7206 8.6769 38 1 14.5511 2.8825 9.1610 39 1 11.3977 0.8820 8.5788 40 1 9.3151 -0.2987 8.0063 41 1 8.0957 0.2803 5.9483 42 1 3.6313 2.3669 -1.0685 43 1 3.5170 0.5956 -1.4566 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12896214_4860298.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 22:25:09 Heat of formation + Delta-G solvation = -89.103667 kcal Electronic energy + Delta-G solvation = -24234.914452 eV Core-core repulsion = 20441.493813 eV Total energy + Delta-G solvation = -3793.420640 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 308.150 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.59307 -40.92348 -40.25908 -39.00808 -37.43183 -37.25669 -35.34133 -32.49223 -31.82307 -30.29252 -28.28402 -27.27793 -26.78676 -26.60015 -23.72207 -23.66977 -22.54011 -21.65625 -20.44261 -19.35634 -18.64590 -17.92907 -17.52391 -17.34120 -17.29924 -17.00661 -16.60242 -16.48471 -16.30650 -16.17690 -15.81749 -15.51732 -15.11151 -14.82746 -14.67984 -14.36736 -14.15082 -14.00181 -13.93523 -13.43875 -13.37325 -13.00258 -12.88304 -12.60914 -12.51129 -12.12326 -12.04107 -11.87631 -11.67445 -11.60083 -11.25833 -10.97415 -10.69278 -10.48225 -10.22880 -9.93099 -9.29293 -4.90948 0.20172 0.38818 1.27576 1.40351 1.49026 1.62265 1.96937 2.58153 2.66456 2.71127 3.38978 3.44854 3.56462 3.64399 3.66287 3.75981 3.84459 3.87014 3.99271 4.05509 4.12788 4.24604 4.24894 4.32679 4.37399 4.53023 4.54187 4.54536 4.61266 4.63719 4.72999 4.77116 4.84815 4.87742 4.98211 5.05667 5.15091 5.23580 5.24541 5.36825 5.40645 5.44514 5.69097 6.25841 6.26841 6.43844 6.45674 7.08044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.392 6.392 3 C 0.054 3.946 4 H 0.084 0.916 5 C -0.148 4.148 6 C -0.106 4.106 7 H 0.104 0.896 8 C 0.131 3.869 9 N -0.707 5.707 10 C 0.510 3.490 11 O -0.576 6.576 12 C 0.039 3.961 13 O -0.324 6.324 14 C 0.112 3.888 15 C -0.150 4.150 16 C -0.082 4.082 17 C -0.095 4.095 18 O -0.551 6.551 19 Si 0.786 3.214 20 C -0.157 4.157 21 C -0.070 4.070 22 C -0.202 4.202 23 C -0.134 4.134 24 H 0.093 0.907 25 H 0.050 0.950 26 H 0.048 0.952 27 H 0.078 0.922 28 H 0.098 0.902 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.420 0.580 32 H 0.127 0.873 33 H 0.124 0.876 34 H 0.111 0.889 35 H 0.119 0.881 36 H 0.386 0.614 37 H -0.277 1.277 38 H -0.305 1.305 39 H 0.150 0.850 40 H 0.163 0.837 41 H 0.160 0.840 42 H 0.105 0.895 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.010 -5.182 4.725 10.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.311 6.311 3 C -0.004 4.004 4 H 0.102 0.898 5 C -0.186 4.186 6 C -0.125 4.125 7 H 0.122 0.878 8 C 0.008 3.992 9 N -0.361 5.361 10 C 0.296 3.704 11 O -0.455 6.455 12 C -0.039 4.039 13 O -0.237 6.237 14 C 0.068 3.932 15 C -0.169 4.169 16 C -0.082 4.082 17 C -0.203 4.203 18 O -0.360 6.360 19 Si 0.690 3.310 20 C -0.174 4.174 21 C -0.088 4.088 22 C -0.221 4.221 23 C -0.172 4.172 24 H 0.112 0.888 25 H 0.069 0.931 26 H 0.067 0.933 27 H 0.096 0.904 28 H 0.116 0.884 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.258 0.742 32 H 0.145 0.855 33 H 0.142 0.858 34 H 0.129 0.871 35 H 0.137 0.863 36 H 0.235 0.765 37 H -0.203 1.203 38 H -0.234 1.234 39 H 0.167 0.833 40 H 0.181 0.819 41 H 0.178 0.822 42 H 0.123 0.877 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.877 -4.329 4.465 9.272 hybrid contribution 0.102 -0.404 -1.252 1.319 sum -6.775 -4.733 3.213 8.867 Atomic orbital electron populations 1.22960 0.79611 1.03695 1.00790 1.87835 1.21177 1.27351 1.94741 1.23157 0.94796 0.85175 0.97302 0.89787 1.23544 0.95454 1.01836 0.97740 1.22654 0.91913 1.00415 0.97487 0.87822 1.21403 0.94240 0.98407 0.85149 1.45696 1.24223 1.40857 1.25366 1.20589 0.81102 0.81928 0.86773 1.90766 1.62365 1.32283 1.60105 1.22716 0.86865 0.98150 0.96152 1.86123 1.37448 1.60643 1.39524 1.19212 0.92403 0.95427 0.86203 1.20289 0.94790 1.02817 0.98997 1.20137 0.96730 0.97042 0.94331 1.25488 0.87602 1.05675 1.01519 1.86578 1.60944 1.32603 1.55840 0.93882 0.81768 0.76638 0.78666 1.21221 0.98555 0.97224 1.00404 1.21337 0.93378 0.98433 0.95632 1.21639 1.03685 0.99766 0.96969 1.23239 0.94076 1.03414 0.96448 0.88818 0.93140 0.93294 0.90361 0.88392 0.92318 0.91737 0.74192 0.85527 0.85826 0.87072 0.86272 0.76466 1.20286 1.23361 0.83286 0.81907 0.82213 0.87670 0.90747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.09 10.85 113.37 1.23 1.14 16 2 O -0.39 -0.42 10.63 -148.98 -1.58 -2.00 16 3 C 0.05 -0.14 4.37 31.12 0.14 0.00 16 4 H 0.08 -0.37 7.87 -2.39 -0.02 -0.38 16 5 C -0.15 0.71 7.47 31.12 0.23 0.94 16 6 C -0.11 0.45 3.68 -10.27 -0.04 0.41 16 7 H 0.10 -0.44 8.14 -2.39 -0.02 -0.46 16 8 C 0.13 -0.15 5.51 86.38 0.48 0.33 16 9 N -0.71 2.06 5.56 -463.05 -2.57 -0.51 16 10 C 0.51 2.17 7.91 87.66 0.69 2.86 16 11 O -0.58 -9.44 16.50 15.98 0.26 -9.18 16 12 C 0.04 -0.07 5.22 71.24 0.37 0.30 16 13 O -0.32 -2.58 9.67 -73.40 -0.71 -3.29 16 14 C 0.11 0.56 6.69 22.51 0.15 0.71 16 15 C -0.15 -1.07 9.55 22.36 0.21 -0.86 16 16 C -0.08 -0.21 5.39 -19.88 -0.11 -0.32 16 17 C -0.10 -0.19 2.82 71.24 0.20 0.01 16 18 O -0.55 -3.28 12.76 -148.98 -1.90 -5.18 16 19 Si 0.79 -1.37 29.79 68.60 2.04 0.68 16 20 C -0.16 0.31 8.67 22.28 0.19 0.50 16 21 C -0.07 0.29 10.04 22.25 0.22 0.51 16 22 C -0.20 0.45 9.04 22.37 0.20 0.65 16 23 C -0.13 0.42 7.47 31.12 0.23 0.65 16 24 H 0.09 -0.46 8.14 -2.39 -0.02 -0.48 16 25 H 0.05 -0.25 8.14 -2.39 -0.02 -0.27 16 26 H 0.05 -0.22 8.14 -2.39 -0.02 -0.24 16 27 H 0.08 -0.38 8.14 -2.39 -0.02 -0.40 16 28 H 0.10 -0.56 7.90 -2.39 -0.02 -0.57 16 29 H 0.06 0.12 8.14 -2.39 -0.02 0.10 16 30 H 0.06 0.06 7.85 -2.39 -0.02 0.04 16 31 H 0.42 -4.26 8.47 -92.71 -0.79 -5.04 16 32 H 0.13 -1.10 7.66 -2.39 -0.02 -1.11 16 33 H 0.12 -1.01 7.66 -2.39 -0.02 -1.03 16 34 H 0.11 1.20 8.06 -2.91 -0.02 1.18 16 35 H 0.12 0.16 7.96 -2.39 -0.02 0.14 16 36 H 0.39 -0.06 8.70 -74.06 -0.64 -0.70 16 37 H -0.28 -0.28 7.11 99.48 0.71 0.42 16 38 H -0.31 -1.92 7.11 99.48 0.71 -1.21 16 39 H 0.15 -0.98 4.87 -2.91 -0.01 -0.99 16 40 H 0.16 -1.70 8.06 -2.91 -0.02 -1.72 16 41 H 0.16 -1.46 6.30 -2.91 -0.02 -1.48 16 42 H 0.10 -0.51 8.10 -2.39 -0.02 -0.53 16 43 H 0.07 -0.11 8.14 -2.39 -0.02 -0.13 16 Total: 0.00 -26.11 360.25 -0.41 -26.52 By element: Atomic # 1 Polarization: -14.51 SS G_CDS: -0.36 Total: -14.88 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: 4.41 Total: 7.85 kcal Atomic # 7 Polarization: 2.06 SS G_CDS: -2.57 Total: -0.51 kcal Atomic # 8 Polarization: -15.73 SS G_CDS: -3.93 Total: -19.66 kcal Atomic # 14 Polarization: -1.37 SS G_CDS: 2.04 Total: 0.68 kcal Total: -26.11 -0.41 -26.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12896214_4860298.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.583 kcal (2) G-P(sol) polarization free energy of solvation -26.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds