Wall clock time and date at job start Sat Mar 6 2021 22:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42900 * 113.99815 * 2 1 4 4 H 1.08994 * 112.85008 * 341.19400 * 3 2 1 5 5 C 1.53960 * 113.61569 * 112.46588 * 3 2 1 6 6 C 1.53777 * 87.02164 * 89.19722 * 5 3 2 7 7 H 1.08997 * 113.61447 * 270.77441 * 6 5 3 8 8 C 1.52996 * 113.61415 * 139.95206 * 6 5 3 9 9 N 1.46504 * 109.47073 * 85.86379 * 8 6 5 10 10 C 1.34775 * 119.99913 * 179.97438 * 9 8 6 11 11 O 1.21703 * 119.99850 * 0.02562 * 10 9 8 12 12 C 1.46582 * 119.99717 * 180.02562 * 10 9 8 13 13 C 1.36650 * 125.45349 * 180.02562 * 12 10 9 14 14 C 1.37477 * 113.29429 * 180.02562 * 13 12 10 15 15 C 1.50703 * 122.44900 * 180.02562 * 14 13 12 16 16 C 1.33823 * 115.10092 * 0.26602 * 14 13 12 17 17 C 1.50696 * 124.52239 * 179.73590 * 16 14 13 18 18 O 1.42908 * 109.47037 * 313.75052 * 17 16 14 19 19 Si 1.86299 * 109.47090 * 193.75154 * 17 16 14 20 20 S 1.70616 * 110.95140 * 359.59041 * 16 14 13 21 21 C 1.53784 * 87.17275 * 25.36233 * 6 5 3 22 22 H 1.09003 * 109.47208 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47603 * 300.00522 * 1 2 3 24 24 H 1.08997 * 109.47372 * 60.00446 * 1 2 3 25 25 H 1.09000 * 113.66097 * 334.67060 * 5 3 2 26 26 H 1.08997 * 113.61605 * 203.72354 * 5 3 2 27 27 H 1.08999 * 109.47342 * 325.86147 * 8 6 5 28 28 H 1.09006 * 109.47189 * 205.86534 * 8 6 5 29 29 H 0.97001 * 119.99894 * 0.02562 * 9 8 6 30 30 H 1.08002 * 123.35937 * 359.97438 * 13 12 10 31 31 H 1.08996 * 109.47164 * 95.80855 * 15 14 13 32 32 H 1.08997 * 109.46828 * 335.81029 * 15 14 13 33 33 H 1.08998 * 109.46799 * 215.81139 * 15 14 13 34 34 H 1.08998 * 109.47344 * 73.74905 * 17 16 14 35 35 H 0.96702 * 113.99961 * 300.00168 * 18 17 16 36 36 H 1.48504 * 109.99988 * 58.67865 * 19 17 16 37 37 H 1.48499 * 109.99969 * 179.97438 * 19 17 16 38 38 H 1.09000 * 113.61482 * 89.15299 * 21 6 5 39 39 H 1.09005 * 113.61488 * 219.97904 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3137 2.0788 -0.3238 5 6 2.7534 1.6497 1.3036 6 6 4.0062 1.0354 0.6571 7 1 4.1105 -0.0345 0.8374 8 6 5.2904 1.8148 0.9472 9 7 5.8564 1.3664 2.2219 10 6 6.9967 1.9169 2.6836 11 8 7.5559 2.7866 2.0418 12 6 7.5633 1.4678 3.9588 13 6 8.7085 1.9471 4.5298 14 6 9.0101 1.3472 5.7295 15 6 10.2274 1.7193 6.5362 16 6 8.1463 0.4051 6.1261 17 6 8.2743 -0.3889 7.4005 18 8 9.6179 -0.8560 7.5378 19 14 7.1134 -1.8448 7.3442 20 16 6.8787 0.2259 4.9982 21 6 3.3755 1.3719 -0.7044 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 0.5137 -0.8900 25 1 2.3940 1.0965 2.1713 26 1 2.8379 2.7206 1.4884 27 1 5.0641 2.8795 1.0045 28 1 6.0105 1.6390 0.1480 29 1 5.4108 0.6729 2.7332 30 1 9.3167 2.7197 4.0829 31 1 9.9505 2.4507 7.2955 32 1 10.9827 2.1478 5.8774 33 1 10.6294 0.8287 7.0190 34 1 8.0213 0.2449 8.2504 35 1 9.9115 -1.4273 6.8149 36 1 7.4275 -2.6999 6.1714 37 1 7.2304 -2.6364 8.5952 38 1 3.6303 2.3668 -1.0697 39 1 3.5188 0.5955 -1.4559 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_12896214_6739946.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 22:25:39 Heat of formation + Delta-G solvation = -54.241050 kcal Electronic energy + Delta-G solvation = -21477.380158 eV Core-core repulsion = 18093.305713 eV Total energy + Delta-G solvation = -3384.074445 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 298.107 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.09187 -40.42037 -39.68814 -37.59582 -37.25501 -35.19951 -32.30577 -30.17756 -29.46821 -27.54193 -26.79658 -26.15992 -24.50047 -23.36791 -21.75934 -20.63533 -20.20302 -19.29988 -17.96555 -17.54496 -17.14741 -16.86150 -16.69674 -16.57773 -16.37007 -16.03583 -15.82121 -15.33096 -14.92443 -14.62570 -14.44214 -14.39208 -13.90713 -13.86131 -13.52760 -13.48908 -13.14236 -12.99602 -12.85991 -12.57936 -12.37820 -12.36099 -11.92197 -11.76600 -11.73407 -11.30139 -11.00477 -10.80673 -10.54303 -10.15727 -9.74176 -9.40441 -5.22142 -0.60029 0.29962 0.69163 1.06482 1.33715 1.46384 1.79706 2.07354 2.22931 2.61414 3.12682 3.45730 3.49991 3.54173 3.67143 3.77057 3.82495 4.14838 4.18439 4.24923 4.33155 4.39636 4.40964 4.41514 4.57841 4.59395 4.64559 4.70473 4.72246 4.78520 4.81599 4.89189 4.97891 5.05184 5.09981 5.19791 5.39990 5.40460 5.46275 6.17990 6.18433 6.39809 7.14283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.370 6.370 3 C 0.061 3.939 4 H 0.076 0.924 5 C -0.155 4.155 6 C -0.119 4.119 7 H 0.102 0.898 8 C 0.129 3.871 9 N -0.725 5.725 10 C 0.590 3.410 11 O -0.526 6.526 12 C -0.258 4.258 13 C -0.050 4.050 14 C -0.087 4.087 15 C -0.108 4.108 16 C -0.239 4.239 17 C -0.030 4.030 18 O -0.517 6.517 19 Si 0.653 3.347 20 S 0.196 5.804 21 C -0.131 4.131 22 H 0.088 0.912 23 H 0.043 0.957 24 H 0.043 0.957 25 H 0.076 0.924 26 H 0.092 0.908 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.399 0.601 30 H 0.155 0.845 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.091 0.909 34 H 0.128 0.872 35 H 0.379 0.621 36 H -0.241 1.241 37 H -0.233 1.233 38 H 0.097 0.903 39 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.820 -1.282 0.862 5.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.288 6.288 3 C 0.003 3.997 4 H 0.094 0.906 5 C -0.193 4.193 6 C -0.137 4.137 7 H 0.120 0.880 8 C 0.006 3.994 9 N -0.377 5.377 10 C 0.377 3.623 11 O -0.404 6.404 12 C -0.378 4.378 13 C -0.083 4.083 14 C -0.101 4.101 15 C -0.166 4.166 16 C -0.359 4.359 17 C -0.142 4.142 18 O -0.324 6.324 19 Si 0.551 3.449 20 S 0.465 5.535 21 C -0.169 4.169 22 H 0.106 0.894 23 H 0.062 0.938 24 H 0.062 0.938 25 H 0.095 0.905 26 H 0.111 0.889 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.234 0.766 30 H 0.172 0.828 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.109 0.891 34 H 0.146 0.854 35 H 0.227 0.773 36 H -0.165 1.165 37 H -0.156 1.156 38 H 0.116 0.884 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -5.747 -2.300 0.851 6.248 hybrid contribution 1.874 0.627 -0.045 1.976 sum -3.874 -1.673 0.806 4.296 Atomic orbital electron populations 1.22842 0.80522 1.03071 1.00191 1.87874 1.20022 1.26359 1.94571 1.23081 0.94516 0.85446 0.96670 0.90556 1.23614 0.96052 1.01540 0.98098 1.22764 0.92731 1.00644 0.97596 0.88030 1.21467 0.94339 0.98810 0.84801 1.45848 1.25642 1.42029 1.24138 1.16954 0.80332 0.81548 0.83517 1.90861 1.60576 1.30944 1.58042 1.24641 1.03661 1.07893 1.01628 1.20745 0.94820 0.99118 0.93667 1.18721 0.99162 0.96161 0.96022 1.20755 0.93576 1.03276 0.99021 1.24332 1.02248 1.05466 1.03805 1.24399 0.90365 1.04073 0.95393 1.86588 1.26929 1.68438 1.50476 0.95419 0.86574 0.79773 0.83175 1.82707 1.24474 1.35132 1.11184 1.23181 0.94058 1.03161 0.96455 0.89372 0.93825 0.93798 0.90492 0.88915 0.90853 0.90874 0.76647 0.82783 0.91145 0.91642 0.89074 0.85409 0.77270 1.16503 1.15649 0.88442 0.89997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.04 10.85 101.05 1.10 1.05 16 2 O -0.37 -0.30 10.63 -35.23 -0.37 -0.67 16 3 C 0.06 -0.06 4.38 -25.82 -0.11 -0.17 16 4 H 0.08 -0.14 7.87 -51.93 -0.41 -0.55 16 5 C -0.16 0.26 7.48 -25.83 -0.19 0.07 16 6 C -0.12 0.17 3.68 -89.81 -0.33 -0.16 16 7 H 0.10 -0.11 8.14 -51.93 -0.42 -0.53 16 8 C 0.13 -0.02 5.50 -4.04 -0.02 -0.04 16 9 N -0.72 -0.27 5.55 -61.65 -0.34 -0.61 16 10 C 0.59 1.91 7.78 -12.90 -0.10 1.81 16 11 O -0.53 -3.63 16.84 5.19 0.09 -3.54 16 12 C -0.26 -0.47 6.45 -36.79 -0.24 -0.71 16 13 C -0.05 -0.10 9.78 -40.43 -0.40 -0.49 16 14 C -0.09 -0.08 5.75 -106.45 -0.61 -0.69 16 15 C -0.11 0.00 9.75 36.01 0.35 0.35 16 16 C -0.24 0.04 5.61 -35.86 -0.20 -0.16 16 17 C -0.03 0.04 2.68 36.00 0.10 0.13 16 18 O -0.52 0.19 10.26 -35.23 -0.36 -0.17 16 19 Si 0.65 -1.11 30.97 -169.99 -5.26 -6.38 16 20 S 0.20 -0.18 19.34 -107.50 -2.08 -2.26 16 21 C -0.13 0.19 7.47 -25.92 -0.19 0.00 16 22 H 0.09 -0.19 8.14 -51.93 -0.42 -0.61 16 23 H 0.04 -0.09 8.14 -51.93 -0.42 -0.51 16 24 H 0.04 -0.09 8.14 -51.93 -0.42 -0.51 16 25 H 0.08 -0.11 8.14 -51.93 -0.42 -0.54 16 26 H 0.09 -0.20 7.92 -51.93 -0.41 -0.61 16 27 H 0.07 0.02 7.87 -51.93 -0.41 -0.39 16 28 H 0.07 0.05 8.14 -51.93 -0.42 -0.37 16 29 H 0.40 -0.68 7.59 -40.82 -0.31 -0.99 16 30 H 0.15 0.30 8.06 -52.49 -0.42 -0.12 16 31 H 0.07 -0.01 8.14 -51.93 -0.42 -0.43 16 32 H 0.06 -0.03 8.10 -51.93 -0.42 -0.45 16 33 H 0.09 0.01 5.53 -51.93 -0.29 -0.28 16 34 H 0.13 -0.25 7.96 -51.93 -0.41 -0.66 16 35 H 0.38 -1.07 8.70 45.56 0.40 -0.67 16 36 H -0.24 -0.05 7.11 56.52 0.40 0.35 16 37 H -0.23 -0.24 7.11 56.52 0.40 0.16 16 38 H 0.10 -0.24 8.10 -51.93 -0.42 -0.66 16 39 H 0.08 -0.07 8.14 -51.93 -0.42 -0.49 16 LS Contribution 337.80 15.07 5.09 5.09 Total: 0.00 -6.66 337.80 -9.79 -16.44 By element: Atomic # 1 Polarization: -3.20 SS G_CDS: -5.69 Total: -8.88 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: -0.86 Total: 0.98 kcal Atomic # 7 Polarization: -0.27 SS G_CDS: -0.34 Total: -0.61 kcal Atomic # 8 Polarization: -3.74 SS G_CDS: -0.65 Total: -4.39 kcal Atomic # 14 Polarization: -1.11 SS G_CDS: -5.26 Total: -6.38 kcal Atomic # 16 Polarization: -0.18 SS G_CDS: -2.08 Total: -2.26 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -6.66 -9.79 -16.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12896214_6739946.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.797 kcal (2) G-P(sol) polarization free energy of solvation -6.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds