Wall clock time and date at job start Sat Mar 6 2021 22:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42900 * 113.99815 * 2 1 4 4 H 1.08994 * 112.85008 * 341.19400 * 3 2 1 5 5 C 1.53960 * 113.61569 * 112.46588 * 3 2 1 6 6 C 1.53777 * 87.02164 * 89.19722 * 5 3 2 7 7 H 1.08997 * 113.61447 * 270.77441 * 6 5 3 8 8 C 1.52996 * 113.61415 * 139.95206 * 6 5 3 9 9 N 1.46504 * 109.47073 * 85.86379 * 8 6 5 10 10 C 1.34775 * 119.99913 * 179.97438 * 9 8 6 11 11 O 1.21703 * 119.99850 * 0.02562 * 10 9 8 12 12 C 1.46582 * 119.99717 * 180.02562 * 10 9 8 13 13 C 1.36650 * 125.45349 * 180.02562 * 12 10 9 14 14 C 1.37477 * 113.29429 * 180.02562 * 13 12 10 15 15 C 1.50703 * 122.44900 * 180.02562 * 14 13 12 16 16 C 1.33823 * 115.10092 * 0.26602 * 14 13 12 17 17 C 1.50696 * 124.52239 * 179.73590 * 16 14 13 18 18 O 1.42908 * 109.47037 * 313.75052 * 17 16 14 19 19 Si 1.86299 * 109.47090 * 193.75154 * 17 16 14 20 20 S 1.70616 * 110.95140 * 359.59041 * 16 14 13 21 21 C 1.53784 * 87.17275 * 25.36233 * 6 5 3 22 22 H 1.09003 * 109.47208 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47603 * 300.00522 * 1 2 3 24 24 H 1.08997 * 109.47372 * 60.00446 * 1 2 3 25 25 H 1.09000 * 113.66097 * 334.67060 * 5 3 2 26 26 H 1.08997 * 113.61605 * 203.72354 * 5 3 2 27 27 H 1.08999 * 109.47342 * 325.86147 * 8 6 5 28 28 H 1.09006 * 109.47189 * 205.86534 * 8 6 5 29 29 H 0.97001 * 119.99894 * 0.02562 * 9 8 6 30 30 H 1.08002 * 123.35937 * 359.97438 * 13 12 10 31 31 H 1.08996 * 109.47164 * 95.80855 * 15 14 13 32 32 H 1.08997 * 109.46828 * 335.81029 * 15 14 13 33 33 H 1.08998 * 109.46799 * 215.81139 * 15 14 13 34 34 H 1.08998 * 109.47344 * 73.74905 * 17 16 14 35 35 H 0.96702 * 113.99961 * 300.00168 * 18 17 16 36 36 H 1.48504 * 109.99988 * 58.67865 * 19 17 16 37 37 H 1.48499 * 109.99969 * 179.97438 * 19 17 16 38 38 H 1.09000 * 113.61482 * 89.15299 * 21 6 5 39 39 H 1.09005 * 113.61488 * 219.97904 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3137 2.0788 -0.3238 5 6 2.7534 1.6497 1.3036 6 6 4.0062 1.0354 0.6571 7 1 4.1105 -0.0345 0.8374 8 6 5.2904 1.8148 0.9472 9 7 5.8564 1.3664 2.2219 10 6 6.9967 1.9169 2.6836 11 8 7.5559 2.7866 2.0418 12 6 7.5633 1.4678 3.9588 13 6 8.7085 1.9471 4.5298 14 6 9.0101 1.3472 5.7295 15 6 10.2274 1.7193 6.5362 16 6 8.1463 0.4051 6.1261 17 6 8.2743 -0.3889 7.4005 18 8 9.6179 -0.8560 7.5378 19 14 7.1134 -1.8448 7.3442 20 16 6.8787 0.2259 4.9982 21 6 3.3755 1.3719 -0.7044 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 0.5137 -0.8900 25 1 2.3940 1.0965 2.1713 26 1 2.8379 2.7206 1.4884 27 1 5.0641 2.8795 1.0045 28 1 6.0105 1.6390 0.1480 29 1 5.4108 0.6729 2.7332 30 1 9.3167 2.7197 4.0829 31 1 9.9505 2.4507 7.2955 32 1 10.9827 2.1478 5.8774 33 1 10.6294 0.8287 7.0190 34 1 8.0213 0.2449 8.2504 35 1 9.9115 -1.4273 6.8149 36 1 7.4275 -2.6999 6.1714 37 1 7.2304 -2.6364 8.5952 38 1 3.6303 2.3668 -1.0697 39 1 3.5188 0.5955 -1.4559 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12896214_6739946.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 22:25:38 Heat of formation + Delta-G solvation = -52.198855 kcal Electronic energy + Delta-G solvation = -21477.291602 eV Core-core repulsion = 18093.305713 eV Total energy + Delta-G solvation = -3383.985889 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 298.107 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.17103 -40.42538 -39.73807 -37.56779 -37.25317 -35.33184 -32.35983 -30.16571 -29.48017 -27.43625 -26.68515 -26.15459 -24.50256 -23.35241 -21.89489 -20.57272 -20.21448 -19.34016 -17.97638 -17.51525 -17.15889 -16.92768 -16.74266 -16.50454 -16.34851 -15.99486 -15.84177 -15.40083 -14.96722 -14.63340 -14.48096 -14.33349 -13.91353 -13.86898 -13.54290 -13.34487 -13.16338 -12.94240 -12.85638 -12.48928 -12.40252 -12.35794 -11.86594 -11.75546 -11.66750 -11.33117 -11.09367 -10.77126 -10.45551 -10.30435 -9.77659 -9.39027 -5.11412 -0.68147 0.27819 0.67863 1.09665 1.28199 1.53844 1.87082 1.98738 2.04841 2.74171 3.24856 3.51155 3.57978 3.59244 3.75391 3.80451 3.87147 4.10539 4.26149 4.31076 4.35102 4.48824 4.54922 4.56796 4.57288 4.62857 4.71412 4.79782 4.82110 4.86208 4.87478 4.90381 5.00014 5.07369 5.15833 5.24670 5.37803 5.40603 5.44180 6.29908 6.31223 6.36356 6.98772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.392 6.392 3 C 0.055 3.945 4 H 0.086 0.914 5 C -0.150 4.150 6 C -0.111 4.111 7 H 0.100 0.900 8 C 0.131 3.869 9 N -0.712 5.712 10 C 0.587 3.413 11 O -0.573 6.573 12 C -0.284 4.284 13 C -0.061 4.061 14 C -0.101 4.101 15 C -0.105 4.105 16 C -0.238 4.238 17 C -0.036 4.036 18 O -0.530 6.530 19 Si 0.724 3.276 20 S 0.255 5.745 21 C -0.131 4.131 22 H 0.093 0.907 23 H 0.050 0.950 24 H 0.049 0.951 25 H 0.077 0.923 26 H 0.099 0.901 27 H 0.070 0.930 28 H 0.063 0.937 29 H 0.410 0.590 30 H 0.144 0.856 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.091 0.909 34 H 0.140 0.860 35 H 0.389 0.611 36 H -0.264 1.264 37 H -0.270 1.270 38 H 0.107 0.893 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.834 -1.840 1.497 6.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.311 6.311 3 C -0.003 4.003 4 H 0.104 0.896 5 C -0.187 4.187 6 C -0.129 4.129 7 H 0.118 0.882 8 C 0.008 3.992 9 N -0.363 5.363 10 C 0.374 3.626 11 O -0.454 6.454 12 C -0.403 4.403 13 C -0.095 4.095 14 C -0.114 4.114 15 C -0.164 4.164 16 C -0.358 4.358 17 C -0.147 4.147 18 O -0.338 6.338 19 Si 0.625 3.375 20 S 0.524 5.476 21 C -0.169 4.169 22 H 0.111 0.889 23 H 0.069 0.931 24 H 0.067 0.933 25 H 0.096 0.904 26 H 0.118 0.882 27 H 0.089 0.911 28 H 0.081 0.919 29 H 0.247 0.753 30 H 0.162 0.838 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.110 0.890 34 H 0.157 0.843 35 H 0.239 0.761 36 H -0.189 1.189 37 H -0.196 1.196 38 H 0.126 0.874 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.793 -2.872 1.484 7.523 hybrid contribution 2.170 0.721 -0.208 2.296 sum -4.623 -2.151 1.276 5.257 Atomic orbital electron populations 1.22957 0.79632 1.03656 1.00803 1.87838 1.21161 1.27392 1.94723 1.23189 0.94789 0.85177 0.97120 0.89623 1.23592 0.95377 1.01920 0.97829 1.22682 0.92074 1.00298 0.97883 0.88178 1.21479 0.94631 0.98903 0.84212 1.45795 1.24753 1.41603 1.24191 1.17207 0.80568 0.81047 0.83745 1.90827 1.61995 1.33111 1.59509 1.24648 1.04307 1.09498 1.01885 1.20788 0.95087 0.99333 0.94292 1.18753 0.99925 0.96775 0.95912 1.20735 0.93373 1.03307 0.98939 1.24584 1.02177 1.04815 1.04176 1.24628 0.90339 1.04498 0.95256 1.86568 1.27310 1.68772 1.51186 0.94625 0.85198 0.77780 0.79892 1.82432 1.22966 1.32874 1.09306 1.23218 0.93950 1.03524 0.96162 0.88892 0.93111 0.93276 0.90395 0.88221 0.91148 0.91851 0.75325 0.83831 0.90999 0.91639 0.89019 0.84303 0.76134 1.18883 1.19567 0.87430 0.90708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.08 10.85 113.37 1.23 1.15 16 2 O -0.39 -0.54 10.63 -148.98 -1.58 -2.13 16 3 C 0.06 -0.13 4.38 31.18 0.14 0.01 16 4 H 0.09 -0.38 7.87 -2.39 -0.02 -0.40 16 5 C -0.15 0.60 7.48 31.18 0.23 0.83 16 6 C -0.11 0.33 3.68 -10.27 -0.04 0.29 16 7 H 0.10 -0.24 8.14 -2.39 -0.02 -0.26 16 8 C 0.13 0.02 5.50 86.38 0.47 0.50 16 9 N -0.71 -0.77 5.55 -467.17 -2.59 -3.37 16 10 C 0.59 4.45 7.78 86.42 0.67 5.12 16 11 O -0.57 -9.09 16.84 -4.36 -0.07 -9.16 16 12 C -0.28 -1.20 6.45 24.08 0.16 -1.05 16 13 C -0.06 -0.31 9.78 21.72 0.21 -0.10 16 14 C -0.10 -0.20 5.75 -21.05 -0.12 -0.32 16 15 C -0.11 -0.04 9.75 71.24 0.69 0.65 16 16 C -0.24 0.24 5.61 24.68 0.14 0.38 16 17 C -0.04 0.12 2.68 71.23 0.19 0.31 16 18 O -0.53 0.74 10.26 -148.98 -1.53 -0.79 16 19 Si 0.72 -3.18 30.97 68.60 2.12 -1.05 16 20 S 0.25 -0.69 19.34 -56.49 -1.09 -1.78 16 21 C -0.13 0.38 7.47 31.12 0.23 0.62 16 22 H 0.09 -0.43 8.14 -2.39 -0.02 -0.45 16 23 H 0.05 -0.24 8.14 -2.39 -0.02 -0.26 16 24 H 0.05 -0.22 8.14 -2.39 -0.02 -0.24 16 25 H 0.08 -0.30 8.14 -2.39 -0.02 -0.32 16 26 H 0.10 -0.52 7.92 -2.39 -0.02 -0.54 16 27 H 0.07 0.08 7.87 -2.39 -0.02 0.06 16 28 H 0.06 0.16 8.14 -2.38 -0.02 0.14 16 29 H 0.41 -1.58 7.59 -92.71 -0.70 -2.28 16 30 H 0.14 0.91 8.06 -2.91 -0.02 0.88 16 31 H 0.07 -0.01 8.14 -2.39 -0.02 -0.03 16 32 H 0.06 0.01 8.10 -2.39 -0.02 -0.01 16 33 H 0.09 0.02 5.53 -2.39 -0.01 0.01 16 34 H 0.14 -0.74 7.96 -2.39 -0.02 -0.76 16 35 H 0.39 -2.43 8.70 -74.06 -0.64 -3.08 16 36 H -0.26 0.15 7.11 99.48 0.71 0.86 16 37 H -0.27 -0.54 7.11 99.48 0.71 0.17 16 38 H 0.11 -0.55 8.10 -2.39 -0.02 -0.57 16 39 H 0.07 -0.10 8.14 -2.38 -0.02 -0.12 16 Total: 0.00 -16.30 337.80 -0.78 -17.08 By element: Atomic # 1 Polarization: -6.95 SS G_CDS: -0.24 Total: -7.19 kcal Atomic # 6 Polarization: 4.18 SS G_CDS: 4.21 Total: 8.39 kcal Atomic # 7 Polarization: -0.77 SS G_CDS: -2.59 Total: -3.37 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: -3.19 Total: -12.07 kcal Atomic # 14 Polarization: -3.18 SS G_CDS: 2.12 Total: -1.05 kcal Atomic # 16 Polarization: -0.69 SS G_CDS: -1.09 Total: -1.78 kcal Total: -16.30 -0.78 -17.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12896214_6739946.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.122 kcal (2) G-P(sol) polarization free energy of solvation -16.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds