Wall clock time and date at job start Sat Mar 6 2021 20:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35534 * 125.67779 * 2 1 4 4 C 1.35445 * 108.87412 * 179.97438 * 3 2 1 5 5 C 1.50704 * 126.07049 * 179.73987 * 4 3 2 6 6 O 1.42898 * 109.46984 * 120.02745 * 5 4 3 7 7 Si 1.86298 * 109.47014 * 0.02773 * 5 4 3 8 8 C 1.39837 * 107.86509 * 0.02562 * 4 3 2 9 9 C 1.37642 * 125.67929 * 180.02562 * 2 1 3 10 10 C 1.46684 * 126.23329 * 0.03012 * 9 2 1 11 11 O 1.21693 * 120.00073 * 186.02352 * 10 9 2 12 12 N 1.34772 * 119.99662 * 6.01851 * 10 9 2 13 13 C 1.46503 * 119.99854 * 184.52020 * 12 10 9 14 14 C 1.50699 * 112.84577 * 68.40276 * 13 12 10 15 15 C 1.38240 * 120.00130 * 193.96488 * 14 13 12 16 16 C 1.38234 * 120.00246 * 179.76268 * 15 14 13 17 17 C 1.38237 * 119.99782 * 0.49045 * 16 15 14 18 18 C 1.38232 * 120.00142 * 359.78503 * 17 16 15 19 19 C 1.38236 * 120.00178 * 359.95697 * 18 17 16 20 20 C 1.53774 * 113.61896 * 297.20759 * 13 12 10 21 21 C 1.53777 * 87.08061 * 270.88331 * 20 13 12 22 22 H 1.08996 * 113.62104 * 89.19822 * 21 20 13 23 23 F 1.39902 * 113.61404 * 220.01945 * 21 20 13 24 24 C 1.53778 * 87.08113 * 334.56259 * 21 20 13 25 25 H 1.09003 * 109.47368 * 96.48799 * 1 2 3 26 26 H 1.09000 * 109.46946 * 216.49510 * 1 2 3 27 27 H 1.08999 * 109.47107 * 336.49623 * 1 2 3 28 28 H 1.08003 * 125.56086 * 359.97438 * 3 2 1 29 29 H 1.08999 * 109.47216 * 240.02747 * 5 4 3 30 30 H 0.96694 * 113.99971 * 299.99652 * 6 5 4 31 31 H 1.48500 * 110.00071 * 58.68012 * 7 5 4 32 32 H 1.48494 * 110.00177 * 180.02562 * 7 5 4 33 33 H 1.07994 * 126.46107 * 179.97438 * 8 4 3 34 34 H 0.96996 * 120.00611 * 4.52868 * 12 10 9 35 35 H 1.08003 * 119.99473 * 0.02562 * 15 14 13 36 36 H 1.07996 * 120.00195 * 180.25213 * 16 15 14 37 37 H 1.07996 * 119.99651 * 179.76519 * 17 16 15 38 38 H 1.08001 * 120.00078 * 179.97438 * 18 17 16 39 39 H 1.07994 * 120.00430 * 180.02562 * 19 18 17 40 40 H 1.09000 * 113.61315 * 25.42922 * 20 13 12 41 41 H 1.08998 * 113.62027 * 156.24464 * 20 13 12 42 42 H 1.09003 * 113.62096 * 270.88559 * 24 21 20 43 43 H 1.09003 * 113.61614 * 139.97665 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2555 1.1010 0.0000 4 6 3.5521 0.7094 0.0006 5 6 4.7537 1.6190 -0.0048 6 8 5.5414 1.3743 1.1621 7 14 4.1886 3.3942 -0.0116 8 6 3.5780 -0.6887 0.0004 9 6 2.2678 -1.1181 -0.0005 10 6 1.8124 -2.5124 -0.0017 11 8 2.6197 -3.4163 0.1085 12 7 0.4998 -2.7924 -0.1249 13 6 0.0341 -4.1780 -0.0269 14 6 0.1796 -4.7474 1.3608 15 6 0.0634 -6.1098 1.5646 16 6 0.2017 -6.6326 2.8367 17 6 0.4462 -5.7921 3.9066 18 6 0.5567 -4.4292 3.7037 19 6 0.4237 -3.9068 2.4308 20 6 0.5896 -5.0942 -1.1300 21 6 -0.6305 -4.6875 -1.9730 22 1 -0.4654 -3.7968 -2.5791 23 9 -1.1859 -5.7450 -2.7014 24 6 -1.3549 -4.4064 -0.6460 25 1 -0.3634 -0.1161 -1.0211 26 1 -0.3633 -0.8262 0.6112 27 1 -0.3633 0.9424 0.4098 28 1 1.9081 2.1236 -0.0004 29 1 5.3524 1.4248 -0.8947 30 1 5.0715 1.5274 1.9931 31 1 3.3449 3.6632 1.1805 32 1 5.3642 4.3014 -0.0175 33 1 4.4583 -1.3143 0.0003 34 1 -0.1365 -2.0767 -0.2785 35 1 -0.1312 -6.7660 0.7292 36 1 0.1150 -7.6973 2.9954 37 1 0.5504 -6.2002 4.9011 38 1 0.7472 -3.7725 4.5397 39 1 0.5104 -2.8422 2.2722 40 1 1.5390 -4.7536 -1.5434 41 1 0.6013 -6.1492 -0.8566 42 1 -1.8764 -5.2735 -0.2407 43 1 -1.9754 -3.5105 -0.6685 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12905100_10803934.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:38:06 Heat of formation + Delta-G solvation = 13.555533 kcal Electronic energy + Delta-G solvation = -28879.509858 eV Core-core repulsion = 24808.346932 eV Total energy + Delta-G solvation = -4071.162927 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 331.137 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -48.65223 -42.76510 -41.68448 -39.67903 -38.53662 -37.90132 -35.07421 -33.56994 -32.02840 -31.81290 -30.84340 -28.40713 -27.22467 -26.40769 -25.58375 -24.03914 -23.47368 -22.51778 -21.36940 -20.94240 -20.36580 -18.88262 -18.63485 -17.65302 -17.37604 -17.07220 -16.93734 -16.77817 -16.58357 -16.04946 -15.92699 -15.76791 -15.66159 -15.42860 -15.20195 -15.07465 -14.48614 -14.32706 -14.05836 -14.01948 -13.92666 -13.61196 -13.53190 -13.40594 -13.18227 -13.09006 -12.64828 -12.41551 -12.34105 -12.02221 -11.82731 -11.75777 -11.54636 -11.25021 -10.51220 -10.43750 -9.91321 -9.71783 -9.68057 -9.30720 -4.86336 0.30557 0.33304 0.40696 1.36179 1.54733 1.63586 1.70304 1.85556 2.06957 2.20765 2.67202 3.10970 3.18435 3.36618 3.42639 3.52716 3.59751 3.72758 3.76172 3.93779 3.98482 4.05662 4.10784 4.17208 4.18731 4.30928 4.37879 4.45064 4.52426 4.55077 4.58298 4.62943 4.64580 4.72318 4.80316 4.88049 4.93723 4.97557 5.07381 5.09850 5.26496 5.47107 5.54309 5.58163 5.61271 5.77654 6.00414 6.13958 6.32197 6.59864 7.01163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.417 5.417 3 C 0.053 3.947 4 C -0.222 4.222 5 C -0.061 4.061 6 O -0.558 6.558 7 Si 0.790 3.210 8 C -0.106 4.106 9 C -0.076 4.076 10 C 0.594 3.406 11 O -0.556 6.556 12 N -0.704 5.704 13 C 0.194 3.806 14 C -0.081 4.081 15 C -0.122 4.122 16 C -0.125 4.125 17 C -0.130 4.130 18 C -0.131 4.131 19 C -0.117 4.117 20 C -0.164 4.164 21 C 0.068 3.932 22 H 0.128 0.872 23 F -0.217 7.217 24 C -0.136 4.136 25 H 0.111 0.889 26 H 0.091 0.909 27 H 0.130 0.870 28 H 0.212 0.788 29 H 0.108 0.892 30 H 0.383 0.617 31 H -0.269 1.269 32 H -0.313 1.313 33 H 0.121 0.879 34 H 0.415 0.585 35 H 0.135 0.865 36 H 0.141 0.859 37 H 0.137 0.863 38 H 0.131 0.869 39 H 0.116 0.884 40 H 0.072 0.928 41 H 0.104 0.896 42 H 0.115 0.885 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.361 6.048 -0.908 11.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 N -0.091 5.091 3 C -0.084 4.084 4 C -0.228 4.228 5 C -0.169 4.169 6 O -0.365 6.365 7 Si 0.694 3.306 8 C -0.133 4.133 9 C -0.187 4.187 10 C 0.383 3.617 11 O -0.434 6.434 12 N -0.362 5.362 13 C 0.106 3.894 14 C -0.083 4.083 15 C -0.140 4.140 16 C -0.142 4.142 17 C -0.148 4.148 18 C -0.149 4.149 19 C -0.135 4.135 20 C -0.203 4.203 21 C 0.032 3.968 22 H 0.145 0.855 23 F -0.198 7.198 24 C -0.173 4.173 25 H 0.129 0.871 26 H 0.109 0.891 27 H 0.149 0.851 28 H 0.229 0.771 29 H 0.126 0.874 30 H 0.232 0.768 31 H -0.195 1.195 32 H -0.241 1.241 33 H 0.139 0.861 34 H 0.259 0.741 35 H 0.152 0.848 36 H 0.158 0.842 37 H 0.155 0.845 38 H 0.149 0.851 39 H 0.134 0.866 40 H 0.091 0.909 41 H 0.122 0.878 42 H 0.134 0.866 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -8.811 5.921 -0.882 10.653 hybrid contribution 0.742 -0.626 1.143 1.500 sum -8.069 5.295 0.261 9.655 Atomic orbital electron populations 1.22873 0.74133 1.07434 1.06021 1.44154 1.07698 1.04368 1.52914 1.22329 0.89114 0.92908 1.04013 1.19850 0.95025 0.93691 1.14268 1.24780 0.92503 1.09610 0.89995 1.86564 1.42454 1.90639 1.16892 0.94327 0.79882 0.70073 0.86346 1.21170 0.94633 0.95213 1.02307 1.20177 0.91234 0.86385 1.20953 1.17169 0.82354 0.86648 0.75491 1.90873 1.54738 1.47191 1.50568 1.45979 1.07505 1.08411 1.74281 1.19650 0.96656 0.82045 0.91013 1.19757 1.00487 0.93988 0.94020 1.21166 1.00511 0.94330 0.97996 1.21435 0.99290 1.00938 0.92580 1.21469 0.99569 0.93687 1.00061 1.21387 1.00014 0.96123 0.97356 1.20979 1.00102 0.99629 0.92769 1.24075 0.98942 1.01434 0.95836 1.23272 0.93750 0.88570 0.91204 0.85477 1.92804 1.86679 1.60073 1.80231 1.23957 0.94313 1.06060 0.93001 0.87111 0.89083 0.85132 0.77110 0.87418 0.76762 1.19537 1.24130 0.86102 0.74082 0.84757 0.84163 0.84472 0.85063 0.86640 0.90938 0.87812 0.86635 0.86231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.52 9.49 127.77 1.21 0.69 16 2 N -0.42 2.26 3.16 -534.31 -1.69 0.57 16 3 C 0.05 -0.30 9.92 83.48 0.83 0.53 16 4 C -0.22 -0.21 5.44 -20.12 -0.11 -0.32 16 5 C -0.06 -0.05 3.02 71.24 0.22 0.16 16 6 O -0.56 -3.19 12.88 -148.98 -1.92 -5.10 16 7 Si 0.79 -3.33 30.59 68.60 2.10 -1.23 16 8 C -0.11 -0.74 10.60 22.57 0.24 -0.51 16 9 C -0.08 -0.24 6.88 40.35 0.28 0.03 16 10 C 0.59 3.27 6.29 86.45 0.54 3.82 16 11 O -0.56 -8.34 15.33 -4.33 -0.07 -8.41 16 12 N -0.70 1.79 3.90 -427.85 -1.67 0.12 16 13 C 0.19 -0.12 0.94 3.38 0.00 -0.12 16 14 C -0.08 -0.28 4.85 -19.86 -0.10 -0.37 16 15 C -0.12 -0.39 8.76 22.27 0.19 -0.19 16 16 C -0.12 -0.36 10.05 22.27 0.22 -0.13 16 17 C -0.13 -0.42 10.05 22.27 0.22 -0.19 16 18 C -0.13 -0.53 10.05 22.27 0.22 -0.31 16 19 C -0.12 -0.51 8.98 22.27 0.20 -0.31 16 20 C -0.16 -0.38 6.62 31.12 0.21 -0.17 16 21 C 0.07 -0.15 5.58 31.12 0.17 0.03 16 22 H 0.13 -0.75 8.14 -2.39 -0.02 -0.77 16 23 F -0.22 -0.81 17.41 44.97 0.78 -0.02 16 24 C -0.14 0.79 7.19 31.12 0.22 1.02 16 25 H 0.11 -2.10 8.06 -2.39 -0.02 -2.12 16 26 H 0.09 -1.39 6.06 -2.39 -0.01 -1.41 16 27 H 0.13 -2.59 8.12 -2.39 -0.02 -2.61 16 28 H 0.21 -2.88 6.19 -2.91 -0.02 -2.90 16 29 H 0.11 0.14 7.96 -2.39 -0.02 0.12 16 30 H 0.38 -0.17 8.70 -74.06 -0.64 -0.81 16 31 H -0.27 0.69 7.11 99.48 0.71 1.40 16 32 H -0.31 -1.58 7.11 99.48 0.71 -0.87 16 33 H 0.12 1.42 8.06 -2.91 -0.02 1.39 16 34 H 0.42 -4.08 4.59 -92.71 -0.43 -4.51 16 35 H 0.13 0.03 6.50 -2.91 -0.02 0.01 16 36 H 0.14 -0.16 8.06 -2.91 -0.02 -0.19 16 37 H 0.14 -0.09 8.06 -2.91 -0.02 -0.11 16 38 H 0.13 0.12 8.06 -2.91 -0.02 0.09 16 39 H 0.12 0.31 6.77 -2.91 -0.02 0.29 16 40 H 0.07 0.52 7.00 -2.39 -0.02 0.50 16 41 H 0.10 0.28 6.18 -2.39 -0.01 0.27 16 42 H 0.12 -0.62 7.82 -2.39 -0.02 -0.64 16 43 H 0.12 -1.43 8.10 -2.39 -0.02 -1.45 16 Total: 0.00 -27.11 354.57 2.35 -24.75 By element: Atomic # 1 Polarization: -14.36 SS G_CDS: 0.03 Total: -14.33 kcal Atomic # 6 Polarization: -1.14 SS G_CDS: 4.78 Total: 3.64 kcal Atomic # 7 Polarization: 4.06 SS G_CDS: -3.36 Total: 0.70 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: -1.99 Total: -13.51 kcal Atomic # 9 Polarization: -0.81 SS G_CDS: 0.78 Total: -0.02 kcal Atomic # 14 Polarization: -3.33 SS G_CDS: 2.10 Total: -1.23 kcal Total: -27.11 2.35 -24.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12905100_10803934.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.310 kcal (2) G-P(sol) polarization free energy of solvation -27.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds