Wall clock time and date at job start Sat Mar 6 2021 20:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35661 * 116.99958 * 2 1 4 4 C 1.38402 * 120.12094 * 0.24163 * 3 2 1 5 5 C 1.38725 * 120.03240 * 180.27067 * 4 3 2 6 6 O 1.35713 * 119.86084 * 179.75709 * 5 4 3 7 7 C 1.42901 * 117.00447 * 359.97438 * 6 5 4 8 8 C 1.39138 * 120.27315 * 359.73943 * 5 4 3 9 9 C 1.50703 * 119.87880 * 180.02562 * 8 5 4 10 10 O 1.42902 * 109.47455 * 284.97774 * 9 8 5 11 11 Si 1.86297 * 109.47036 * 164.97766 * 9 8 5 12 12 C 1.37583 * 120.23894 * 0.02562 * 8 5 4 13 13 C 1.39810 * 119.96820 * 359.97438 * 12 8 5 14 14 C 1.47305 * 120.13903 * 179.97438 * 13 12 8 15 15 O 1.21613 * 120.00157 * 180.02562 * 14 13 12 16 16 N 1.34776 * 119.99784 * 0.02562 * 14 13 12 17 17 C 1.46492 * 119.99984 * 185.12492 * 16 14 13 18 18 C 1.50700 * 112.85243 * 294.27458 * 17 16 14 19 19 C 1.38234 * 119.99878 * 340.70499 * 18 17 16 20 20 C 1.38227 * 120.00310 * 179.97438 * 19 18 17 21 21 C 1.38238 * 119.99977 * 0.27888 * 20 19 18 22 22 C 1.38242 * 119.99600 * 359.52773 * 21 20 19 23 23 C 1.38230 * 120.00200 * 160.67942 * 18 17 16 24 24 C 1.53784 * 113.61455 * 163.07813 * 17 16 14 25 25 C 1.53783 * 87.08107 * 270.79974 * 24 17 16 26 26 H 1.08995 * 113.61483 * 89.20265 * 25 24 17 27 27 F 1.39898 * 113.61027 * 220.02050 * 25 24 17 28 28 C 1.53780 * 87.08169 * 334.56642 * 25 24 17 29 29 H 1.08995 * 109.47235 * 299.99717 * 1 2 3 30 30 H 1.09001 * 109.46900 * 59.99954 * 1 2 3 31 31 H 1.09002 * 109.47028 * 179.97438 * 1 2 3 32 32 H 1.08003 * 119.98122 * 359.97438 * 4 3 2 33 33 H 1.09003 * 109.46904 * 299.99548 * 7 6 5 34 34 H 1.09000 * 109.46946 * 59.99405 * 7 6 5 35 35 H 1.08998 * 109.46996 * 179.97438 * 7 6 5 36 36 H 1.09004 * 109.46941 * 44.97802 * 9 8 5 37 37 H 0.96706 * 113.99605 * 59.99815 * 10 9 8 38 38 H 1.48499 * 110.00045 * 300.00034 * 11 9 8 39 39 H 1.48506 * 109.99939 * 61.32183 * 11 9 8 40 40 H 1.08008 * 120.01352 * 180.02562 * 12 8 5 41 41 H 0.97004 * 119.99804 * 5.12012 * 16 14 13 42 42 H 1.08006 * 119.99805 * 359.97288 * 19 18 17 43 43 H 1.08006 * 120.00592 * 179.97438 * 20 19 18 44 44 H 1.08005 * 120.00094 * 179.72860 * 21 20 19 45 45 H 1.08000 * 119.99569 * 180.23823 * 22 21 20 46 46 H 1.08005 * 120.00340 * 359.97438 * 23 18 17 47 47 H 1.08993 * 113.61508 * 25.35254 * 24 17 16 48 48 H 1.09009 * 113.61313 * 156.25164 * 24 17 16 49 49 H 1.09003 * 113.61673 * 270.88430 * 28 25 24 50 50 H 1.08993 * 113.61375 * 139.98018 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.2935 2.3711 0.0050 5 6 1.9252 3.6061 -0.0006 6 8 1.1850 4.7437 -0.0006 7 6 -0.2360 4.5931 0.0048 8 6 3.3144 3.6835 -0.0060 9 6 3.9914 5.0299 -0.0115 10 8 3.8895 5.6090 -1.3140 11 14 5.7876 4.8237 0.4376 12 6 4.0723 2.5352 -0.0061 13 6 3.4461 1.2852 -0.0004 14 6 4.2539 0.0533 -0.0012 15 8 3.7066 -1.0327 0.0033 16 7 5.5994 0.1299 -0.0069 17 6 6.4020 -1.0903 -0.1210 18 6 6.2567 -2.0001 1.0716 19 6 5.7755 -1.5006 2.2674 20 6 5.6416 -2.3351 3.3612 21 6 5.9944 -3.6679 3.2609 22 6 6.4719 -4.1683 2.0640 23 6 6.6040 -3.3341 0.9697 24 6 7.8634 -0.8310 -0.5234 25 6 7.3977 -0.9394 -1.9850 26 1 7.0738 0.0098 -2.4116 27 9 8.2945 -1.6276 -2.8093 28 6 6.2411 -1.8119 -1.4694 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 0.2149 2.3165 0.0086 33 1 -0.5464 4.0418 -0.8829 34 1 -0.5400 4.0459 0.8971 35 1 -0.7056 5.5768 0.0046 36 1 3.5077 5.6827 0.7152 37 1 2.9802 5.7455 -1.6136 38 1 5.9072 4.2223 1.7901 39 1 6.4656 3.9614 -0.5635 40 1 5.1504 2.5995 -0.0099 41 1 6.0364 0.9930 0.0645 42 1 5.5041 -0.4582 2.3470 43 1 5.2660 -1.9447 4.2956 44 1 5.8940 -4.3189 4.1168 45 1 6.7439 -5.2105 1.9846 46 1 6.9793 -3.7246 0.0353 47 1 8.2215 0.1619 -0.2517 48 1 8.5467 -1.6254 -0.2228 49 1 6.4808 -2.8744 -1.4274 50 1 5.2896 -1.6108 -1.9614 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12905100_12297780.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:38:18 Heat of formation + Delta-G solvation = -84.562239 kcal Electronic energy + Delta-G solvation = -37748.449748 eV Core-core repulsion = 32817.329883 eV Total energy + Delta-G solvation = -4931.119865 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 388.156 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -48.68894 -42.40464 -41.69650 -40.31362 -39.64152 -38.64197 -38.35868 -37.03412 -34.50036 -32.34432 -32.19102 -31.85648 -31.46798 -29.06894 -28.28509 -27.26020 -26.25657 -26.04730 -24.70558 -23.63812 -23.07349 -22.55237 -21.74487 -20.49761 -20.09690 -18.88044 -18.68948 -18.53333 -17.86853 -17.43561 -17.34242 -17.24103 -16.84385 -16.66902 -16.63063 -16.44784 -16.12302 -15.87137 -15.82213 -15.73111 -15.61434 -15.39780 -15.10232 -14.47450 -14.37994 -14.29288 -14.08811 -13.98234 -13.92131 -13.70040 -13.56778 -13.42451 -13.37021 -12.70983 -12.68618 -12.60968 -12.60288 -12.33432 -12.21053 -11.99214 -11.79162 -11.76350 -11.52371 -11.39152 -11.16905 -10.91137 -10.38482 -10.06351 -9.89732 -9.66197 -9.32180 -4.80650 -0.42722 -0.05812 0.32786 0.42307 1.35855 1.56932 1.68356 1.79018 1.89683 1.96503 2.05297 2.45221 2.68211 3.07866 3.14712 3.28301 3.35087 3.36701 3.46627 3.57336 3.63276 3.71702 3.89781 3.94444 3.96575 3.99900 4.04815 4.11321 4.13345 4.18004 4.20056 4.22126 4.26253 4.39030 4.43115 4.51048 4.53274 4.55789 4.57461 4.62430 4.63640 4.64572 4.74415 4.79539 4.90301 4.93342 4.98792 5.08087 5.13593 5.27982 5.48196 5.54731 5.62547 5.89395 6.01908 6.14756 6.30695 6.63154 7.08030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.303 6.303 3 C 0.218 3.782 4 C -0.305 4.305 5 C 0.211 3.789 6 O -0.311 6.311 7 C 0.012 3.988 8 C -0.199 4.199 9 C -0.078 4.078 10 O -0.546 6.546 11 Si 0.790 3.210 12 C -0.013 4.013 13 C -0.228 4.228 14 C 0.567 3.433 15 O -0.535 6.535 16 N -0.708 5.708 17 C 0.195 3.805 18 C -0.076 4.076 19 C -0.115 4.115 20 C -0.131 4.131 21 C -0.129 4.129 22 C -0.124 4.124 23 C -0.122 4.122 24 C -0.140 4.140 25 C 0.068 3.932 26 H 0.124 0.876 27 F -0.215 7.215 28 C -0.159 4.159 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.112 0.888 32 H 0.169 0.831 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.127 0.873 36 H 0.084 0.916 37 H 0.373 0.627 38 H -0.260 1.260 39 H -0.267 1.267 40 H 0.145 0.855 41 H 0.409 0.591 42 H 0.111 0.889 43 H 0.131 0.869 44 H 0.139 0.861 45 H 0.142 0.858 46 H 0.135 0.865 47 H 0.111 0.889 48 H 0.118 0.882 49 H 0.110 0.890 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.859 6.187 2.130 7.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.213 6.213 3 C 0.169 3.831 4 C -0.324 4.324 5 C 0.163 3.837 6 O -0.223 6.223 7 C -0.082 4.082 8 C -0.200 4.200 9 C -0.186 4.186 10 O -0.352 6.352 11 Si 0.689 3.311 12 C -0.031 4.031 13 C -0.232 4.232 14 C 0.356 3.644 15 O -0.412 6.412 16 N -0.362 5.362 17 C 0.108 3.892 18 C -0.077 4.077 19 C -0.133 4.133 20 C -0.149 4.149 21 C -0.147 4.147 22 C -0.142 4.142 23 C -0.141 4.141 24 C -0.178 4.178 25 C 0.032 3.968 26 H 0.141 0.859 27 F -0.196 7.196 28 C -0.198 4.198 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.131 0.869 32 H 0.186 0.814 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.145 0.855 36 H 0.102 0.898 37 H 0.222 0.778 38 H -0.185 1.185 39 H -0.193 1.193 40 H 0.162 0.838 41 H 0.247 0.753 42 H 0.129 0.871 43 H 0.149 0.851 44 H 0.157 0.843 45 H 0.160 0.840 46 H 0.152 0.848 47 H 0.129 0.871 48 H 0.136 0.864 49 H 0.128 0.872 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.877 4.827 2.335 5.681 hybrid contribution -2.238 -0.471 -0.206 2.296 sum -4.115 4.356 2.129 6.359 Atomic orbital electron populations 1.23492 0.76335 1.05838 1.02755 1.86371 1.23352 1.25680 1.85938 1.18920 0.90770 0.85013 0.88419 1.21475 1.02194 0.90647 1.18108 1.18815 0.90400 0.85338 0.89148 1.86046 1.21458 1.28106 1.86661 1.23526 0.75657 1.06336 1.02689 1.19687 0.91030 0.97134 1.12138 1.25332 1.14768 0.89914 0.88567 1.86679 1.32906 1.83414 1.32211 0.92253 0.74135 0.87487 0.77226 1.20859 0.99400 0.89931 0.92931 1.19148 0.91199 0.93508 1.19314 1.17956 0.81963 0.88545 0.75913 1.90852 1.71851 1.29638 1.48828 1.45532 1.05286 1.09200 1.76183 1.19642 0.92362 0.84906 0.92281 1.19684 0.99632 0.94372 0.94040 1.20951 0.99394 0.99797 0.93161 1.21363 1.00126 0.94453 0.98956 1.21454 0.98909 0.95650 0.98661 1.21425 0.99238 1.00675 0.92871 1.21175 1.00628 0.92662 0.99589 1.23973 0.93887 1.06420 0.93492 1.23228 0.88360 0.96149 0.89074 0.85881 1.92801 1.70055 1.81689 1.75014 1.24062 0.99277 1.01353 0.95071 0.90877 0.90869 0.86923 0.81379 0.91159 0.91360 0.85503 0.89820 0.77839 1.18493 1.19330 0.83843 0.75341 0.87101 0.85126 0.84321 0.84044 0.84755 0.87057 0.86365 0.87208 0.91040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.01 9.81 113.37 1.11 1.10 16 2 O -0.30 -2.65 8.56 -68.80 -0.59 -3.24 16 3 C 0.22 1.50 6.70 22.82 0.15 1.66 16 4 C -0.31 -0.42 8.01 22.43 0.18 -0.24 16 5 C 0.21 0.31 6.62 22.60 0.15 0.46 16 6 O -0.31 0.60 9.36 -90.34 -0.85 -0.25 16 7 C 0.01 -0.10 9.80 113.37 1.11 1.01 16 8 C -0.20 -0.53 5.27 -19.80 -0.10 -0.63 16 9 C -0.08 0.00 2.32 71.24 0.17 0.17 16 10 O -0.55 -0.79 12.65 -148.98 -1.89 -2.68 16 11 Si 0.79 -2.16 30.39 68.60 2.09 -0.07 16 12 C -0.01 -0.05 8.13 22.50 0.18 0.14 16 13 C -0.23 -1.68 5.89 -20.00 -0.12 -1.80 16 14 C 0.57 5.43 6.44 86.63 0.56 5.98 16 15 O -0.53 -8.94 13.71 16.89 0.23 -8.71 16 16 N -0.71 -2.55 4.21 -427.27 -1.80 -4.35 16 17 C 0.20 0.71 0.92 3.39 0.00 0.71 16 18 C -0.08 -0.52 4.49 -19.87 -0.09 -0.61 16 19 C -0.11 -0.93 8.74 22.27 0.19 -0.74 16 20 C -0.13 -0.88 10.05 22.27 0.22 -0.66 16 21 C -0.13 -0.66 10.05 22.27 0.22 -0.43 16 22 C -0.12 -0.59 10.05 22.27 0.22 -0.37 16 23 C -0.12 -0.70 9.03 22.27 0.20 -0.50 16 24 C -0.14 0.15 7.20 31.12 0.22 0.37 16 25 C 0.07 0.11 5.58 31.12 0.17 0.28 16 26 H 0.12 -0.14 8.14 -2.39 -0.02 -0.16 16 27 F -0.21 -1.38 17.41 44.97 0.78 -0.60 16 28 C -0.16 -0.75 6.71 31.12 0.21 -0.55 16 29 H 0.07 -0.34 7.65 -2.39 -0.02 -0.36 16 30 H 0.07 -0.34 7.67 -2.39 -0.02 -0.36 16 31 H 0.11 -0.31 8.14 -2.39 -0.02 -0.33 16 32 H 0.17 -0.74 4.50 -2.91 -0.01 -0.75 16 33 H 0.07 -0.70 7.65 -2.39 -0.02 -0.72 16 34 H 0.07 -0.66 7.65 -2.39 -0.02 -0.68 16 35 H 0.13 -1.52 8.14 -2.39 -0.02 -1.54 16 36 H 0.08 -0.15 7.82 -2.39 -0.02 -0.17 16 37 H 0.37 -0.84 8.59 -74.05 -0.64 -1.47 16 38 H -0.26 0.11 7.11 99.48 0.71 0.82 16 39 H -0.27 0.01 6.80 99.48 0.68 0.69 16 40 H 0.14 0.03 3.25 -2.91 -0.01 0.02 16 41 H 0.41 -0.54 6.70 -92.71 -0.62 -1.17 16 42 H 0.11 0.85 7.00 -2.91 -0.02 0.83 16 43 H 0.13 0.44 8.06 -2.91 -0.02 0.42 16 44 H 0.14 0.10 8.06 -2.91 -0.02 0.08 16 45 H 0.14 0.04 8.06 -2.91 -0.02 0.02 16 46 H 0.13 0.34 6.19 -2.91 -0.02 0.32 16 47 H 0.11 -0.60 8.09 -2.39 -0.02 -0.62 16 48 H 0.12 -0.17 7.99 -2.38 -0.02 -0.19 16 49 H 0.11 0.45 5.95 -2.39 -0.01 0.44 16 50 H 0.07 0.62 7.53 -2.39 -0.02 0.60 16 Total: 0.00 -21.55 404.84 2.73 -18.82 By element: Atomic # 1 Polarization: -4.06 SS G_CDS: -0.22 Total: -4.28 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: 4.98 Total: 5.36 kcal Atomic # 7 Polarization: -2.55 SS G_CDS: -1.80 Total: -4.35 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: -3.09 Total: -14.87 kcal Atomic # 9 Polarization: -1.38 SS G_CDS: 0.78 Total: -0.60 kcal Atomic # 14 Polarization: -2.16 SS G_CDS: 2.09 Total: -0.07 kcal Total: -21.55 2.73 -18.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12905100_12297780.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.740 kcal (2) G-P(sol) polarization free energy of solvation -21.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds