Wall clock time and date at job start Sat Mar 6 2021 20:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86303 * 109.46902 * 2 1 4 4 C 1.50697 * 109.47358 * 120.00079 * 2 1 3 5 5 C 1.38184 * 119.84230 * 255.02053 * 4 2 1 6 6 C 1.38315 * 120.14199 * 179.71911 * 5 4 2 7 7 F 1.35101 * 120.08176 * 180.27950 * 6 5 4 8 8 C 1.39798 * 119.83538 * 0.53628 * 6 5 4 9 9 C 1.47692 * 120.15824 * 179.74513 * 8 6 5 10 10 O 1.21575 * 119.99877 * 359.72223 * 9 8 6 11 11 N 1.34781 * 120.00205 * 179.72293 * 9 8 6 12 12 C 1.46499 * 120.00145 * 185.05540 * 11 9 8 13 13 C 1.50705 * 112.85116 * 54.64179 * 12 11 9 14 14 C 1.38237 * 120.00183 * 201.45943 * 13 12 11 15 15 C 1.38226 * 120.00075 * 179.76924 * 14 13 12 16 16 C 1.38238 * 119.99903 * 0.50615 * 15 14 13 17 17 C 1.38237 * 120.00035 * 359.74966 * 16 15 14 18 18 C 1.38228 * 119.99930 * 359.97438 * 17 16 15 19 19 C 1.53785 * 113.60971 * 283.34280 * 12 11 9 20 20 C 1.53780 * 87.07726 * 270.87985 * 19 12 11 21 21 H 1.08999 * 113.68894 * 89.13399 * 20 19 12 22 22 F 1.39899 * 113.61584 * 220.01846 * 20 19 12 23 23 C 1.53770 * 113.61665 * 185.84567 * 12 11 9 24 24 C 1.39663 * 119.68880 * 359.46603 * 8 6 5 25 25 C 1.38068 * 119.85075 * 0.25805 * 24 8 6 26 26 F 1.35097 * 119.92003 * 180.02562 * 25 24 8 27 27 H 0.96698 * 114.00097 * 299.99302 * 1 2 3 28 28 H 1.09006 * 109.47005 * 240.00133 * 2 1 3 29 29 H 1.48499 * 109.99812 * 300.00109 * 3 2 1 30 30 H 1.48497 * 110.00078 * 61.32243 * 3 2 1 31 31 H 1.07994 * 119.92642 * 359.97438 * 5 4 2 32 32 H 0.97001 * 119.99793 * 5.32204 * 11 9 8 33 33 H 1.08009 * 119.99487 * 0.02562 * 14 13 12 34 34 H 1.08000 * 120.00335 * 180.23375 * 15 14 13 35 35 H 1.08007 * 120.00131 * 179.72459 * 16 15 14 36 36 H 1.07996 * 119.99989 * 179.97438 * 17 16 15 37 37 H 1.07999 * 120.00292 * 179.97438 * 18 17 16 38 38 H 1.08995 * 113.62099 * 25.42915 * 19 12 11 39 39 H 1.09006 * 113.61424 * 156.33841 * 19 12 11 40 40 H 1.09005 * 113.61788 * 203.66070 * 23 12 11 41 41 H 1.09000 * 113.61194 * 334.56010 * 23 12 11 42 42 H 1.08000 * 120.07356 * 180.23030 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 2.4527 0.0198 2.2813 6 6 2.9102 -0.6254 3.4160 7 9 3.4145 0.0901 4.4451 8 6 2.8545 -2.0202 3.4931 9 6 3.3463 -2.7169 4.6990 10 8 3.8055 -2.0776 5.6255 11 7 3.2860 -4.0613 4.7722 12 6 3.6699 -4.7455 6.0095 13 6 2.9178 -4.2417 7.2144 14 6 3.4357 -4.4323 8.4818 15 6 2.7482 -3.9661 9.5867 16 6 1.5378 -3.3183 9.4248 17 6 1.0173 -3.1324 8.1578 18 6 1.7076 -3.5936 7.0525 19 6 5.1909 -4.8287 6.2208 20 6 5.1478 -6.1524 5.4394 21 1 5.2663 -6.0296 4.3628 22 9 5.9825 -7.1428 5.9681 23 6 3.6822 -6.2783 5.8875 24 6 2.3263 -2.7514 2.4268 25 6 1.8680 -2.0937 1.3027 26 9 1.3562 -2.7995 0.2707 27 1 -0.3933 0.4416 0.7651 28 1 1.7924 -0.5138 -0.8900 29 1 1.5614 2.4679 -1.2085 30 1 1.5879 2.4586 1.2242 31 1 2.4992 1.0969 2.2183 32 1 2.9920 -4.5762 4.0045 33 1 4.3795 -4.9420 8.6085 34 1 3.1546 -4.1116 10.5766 35 1 0.9984 -2.9579 10.2884 36 1 0.0715 -2.6267 8.0314 37 1 1.3008 -3.4487 6.0626 38 1 5.7461 -4.0399 5.7132 39 1 5.4808 -4.9472 7.2649 40 1 3.5596 -6.7932 6.8404 41 1 3.0193 -6.6598 5.1108 42 1 2.2769 -3.8289 2.4813 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12905100_12360598.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:38:57 Heat of formation + Delta-G solvation = -98.287357 kcal Electronic energy + Delta-G solvation = -33089.395642 eV Core-core repulsion = 28167.212282 eV Total energy + Delta-G solvation = -4922.183360 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 364.107 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -50.11874 -50.09777 -48.61157 -42.14408 -40.64511 -39.57934 -38.63777 -37.75776 -34.76437 -33.08946 -31.92421 -31.75480 -31.38761 -28.00809 -27.16583 -25.95195 -24.41646 -24.05618 -23.51516 -22.61242 -22.03433 -20.45809 -19.79239 -18.88252 -18.69152 -18.39526 -17.97055 -17.37443 -17.33794 -16.97438 -16.88151 -16.59045 -16.57948 -16.25031 -16.10868 -15.94832 -15.76630 -15.66674 -15.60803 -15.37201 -15.10596 -14.69651 -14.39380 -14.17347 -14.03098 -13.90439 -13.83657 -13.52997 -13.36208 -13.19176 -12.99384 -12.69245 -12.41563 -12.28982 -11.97763 -11.94484 -11.66282 -11.44708 -11.24764 -10.79628 -10.61427 -10.35947 -9.87360 -9.84389 -9.62748 -4.97406 -0.82547 -0.31872 0.34828 0.44559 1.14649 1.37008 1.52687 1.67841 1.90290 2.22085 2.71180 2.77742 2.82804 3.08699 3.14396 3.21063 3.24244 3.37616 3.42930 3.48295 3.57339 3.75257 3.81701 3.96157 4.01618 4.13504 4.16598 4.20015 4.31209 4.37300 4.48248 4.52896 4.56707 4.59349 4.63580 4.67953 4.68490 4.72678 4.82704 4.96735 5.00602 5.10680 5.29313 5.37029 5.49795 5.57468 5.61891 6.03837 6.25449 6.37555 6.97417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.539 6.539 2 C -0.086 4.086 3 Si 0.770 3.230 4 C -0.090 4.090 5 C -0.132 4.132 6 C 0.141 3.859 7 F -0.125 7.125 8 C -0.146 4.146 9 C 0.562 3.438 10 O -0.536 6.536 11 N -0.692 5.692 12 C 0.197 3.803 13 C -0.075 4.075 14 C -0.123 4.123 15 C -0.126 4.126 16 C -0.131 4.131 17 C -0.132 4.132 18 C -0.114 4.114 19 C -0.166 4.166 20 C 0.068 3.932 21 H 0.135 0.865 22 F -0.219 7.219 23 C -0.140 4.140 24 C -0.076 4.076 25 C 0.105 3.895 26 F -0.127 7.127 27 H 0.390 0.610 28 H 0.133 0.867 29 H -0.294 1.294 30 H -0.271 1.271 31 H 0.169 0.831 32 H 0.421 0.579 33 H 0.135 0.865 34 H 0.139 0.861 35 H 0.135 0.865 36 H 0.130 0.870 37 H 0.118 0.882 38 H 0.077 0.923 39 H 0.104 0.896 40 H 0.111 0.889 41 H 0.118 0.882 42 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.469 -2.069 -3.004 3.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.348 6.348 2 C -0.194 4.194 3 Si 0.674 3.326 4 C -0.092 4.092 5 C -0.150 4.150 6 C 0.120 3.880 7 F -0.103 7.103 8 C -0.150 4.150 9 C 0.349 3.651 10 O -0.412 6.412 11 N -0.347 5.347 12 C 0.110 3.890 13 C -0.076 4.076 14 C -0.141 4.141 15 C -0.144 4.144 16 C -0.149 4.149 17 C -0.150 4.150 18 C -0.132 4.132 19 C -0.204 4.204 20 C 0.032 3.968 21 H 0.152 0.848 22 F -0.200 7.200 23 C -0.177 4.177 24 C -0.096 4.096 25 C 0.085 3.915 26 F -0.105 7.105 27 H 0.240 0.760 28 H 0.151 0.849 29 H -0.222 1.222 30 H -0.198 1.198 31 H 0.186 0.814 32 H 0.261 0.739 33 H 0.153 0.847 34 H 0.157 0.843 35 H 0.153 0.847 36 H 0.148 0.852 37 H 0.136 0.864 38 H 0.096 0.904 39 H 0.123 0.877 40 H 0.129 0.871 41 H 0.136 0.864 42 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -0.259 -1.143 -2.876 3.106 hybrid contribution -1.186 -0.107 0.378 1.249 sum -1.445 -1.250 -2.498 3.144 Atomic orbital electron populations 1.86658 1.17470 1.80386 1.50260 1.25279 0.84173 1.12488 0.97495 0.93861 0.90135 0.71292 0.77346 1.20434 0.98791 0.92668 0.97271 1.21095 1.00377 1.02341 0.91170 1.17791 0.96227 0.88476 0.85500 1.91611 1.84098 1.77627 1.56953 1.19789 1.06440 0.92247 0.96538 1.17989 0.78427 0.82633 0.86088 1.90923 1.44523 1.66535 1.39222 1.45414 1.68356 1.05508 1.15406 1.19633 0.93613 0.92964 0.82802 1.19623 0.94964 0.99100 0.93926 1.21187 1.00331 1.00660 0.91904 1.21412 0.95330 0.98137 0.99541 1.21447 0.96515 0.99133 0.97810 1.21368 1.00606 1.00043 0.92987 1.20975 0.95074 0.98298 0.98853 1.24152 0.95568 0.97750 1.02963 1.23322 0.88874 0.84960 0.99657 0.84796 1.92804 1.74220 1.64387 1.88539 1.23969 0.96266 0.91890 1.05618 1.21368 0.95902 1.02427 0.89857 1.17342 0.99124 0.88973 0.86044 1.91577 1.84391 1.78152 1.56429 0.76044 0.84904 1.22168 1.19777 0.81365 0.73909 0.84748 0.84349 0.84662 0.85189 0.86439 0.90438 0.87741 0.87053 0.86370 0.79974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.46 12.88 -148.98 -1.92 -1.46 16 2 C -0.09 0.36 2.44 71.23 0.17 0.54 16 3 Si 0.77 -4.15 30.24 68.60 2.07 -2.07 16 4 C -0.09 0.37 5.27 -19.78 -0.10 0.27 16 5 C -0.13 0.45 8.62 22.28 0.19 0.64 16 6 C 0.14 0.17 7.28 22.67 0.17 0.33 16 7 F -0.12 -0.95 15.55 44.97 0.70 -0.25 16 8 C -0.15 0.20 5.88 -20.06 -0.12 0.09 16 9 C 0.56 0.99 6.17 86.74 0.54 1.52 16 10 O -0.54 -5.82 13.97 -3.95 -0.06 -5.88 16 11 N -0.69 3.35 4.49 -426.90 -1.92 1.43 16 12 C 0.20 -0.43 0.93 3.38 0.00 -0.42 16 13 C -0.08 -0.22 4.27 -19.86 -0.08 -0.31 16 14 C -0.12 -0.39 9.14 22.27 0.20 -0.19 16 15 C -0.13 -0.41 10.05 22.27 0.22 -0.19 16 16 C -0.13 -0.48 10.05 22.27 0.22 -0.26 16 17 C -0.13 -0.58 10.05 22.27 0.22 -0.36 16 18 C -0.11 -0.48 8.32 22.27 0.19 -0.29 16 19 C -0.17 0.10 6.93 31.12 0.22 0.32 16 20 C 0.07 -0.28 5.58 31.12 0.17 -0.10 16 21 H 0.13 -1.19 8.14 -2.39 -0.02 -1.21 16 22 F -0.22 -0.55 17.41 44.97 0.78 0.23 16 23 C -0.14 0.89 7.19 31.11 0.22 1.12 16 24 C -0.08 0.51 9.51 22.57 0.21 0.72 16 25 C 0.10 -0.40 7.23 22.33 0.16 -0.24 16 26 F -0.13 0.12 16.73 44.97 0.75 0.87 16 27 H 0.39 -2.76 8.70 -74.06 -0.64 -3.40 16 28 H 0.13 -0.71 7.89 -2.38 -0.02 -0.73 16 29 H -0.29 -0.71 7.11 99.48 0.71 -0.01 16 30 H -0.27 0.68 6.68 99.48 0.66 1.35 16 31 H 0.17 -1.02 4.83 -2.91 -0.01 -1.03 16 32 H 0.42 -5.20 6.68 -92.71 -0.62 -5.82 16 33 H 0.13 0.02 6.10 -2.91 -0.02 0.00 16 34 H 0.14 -0.09 8.06 -2.91 -0.02 -0.11 16 35 H 0.14 0.00 8.06 -2.91 -0.02 -0.03 16 36 H 0.13 0.16 8.06 -2.91 -0.02 0.14 16 37 H 0.12 0.25 6.79 -2.91 -0.02 0.23 16 38 H 0.08 0.16 8.14 -2.39 -0.02 0.14 16 39 H 0.10 0.02 5.89 -2.38 -0.01 0.01 16 40 H 0.11 -0.56 8.05 -2.38 -0.02 -0.58 16 41 H 0.12 -1.38 8.10 -2.39 -0.02 -1.39 16 42 H 0.18 -2.52 6.42 -2.91 -0.02 -2.54 16 Total: 0.00 -22.02 359.85 3.09 -18.93 By element: Atomic # 1 Polarization: -14.84 SS G_CDS: -0.14 Total: -14.98 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: 2.81 Total: 3.18 kcal Atomic # 7 Polarization: 3.35 SS G_CDS: -1.92 Total: 1.43 kcal Atomic # 8 Polarization: -5.36 SS G_CDS: -1.97 Total: -7.34 kcal Atomic # 9 Polarization: -1.39 SS G_CDS: 2.23 Total: 0.84 kcal Atomic # 14 Polarization: -4.15 SS G_CDS: 2.07 Total: -2.07 kcal Total: -22.02 3.09 -18.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12905100_12360598.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.354 kcal (2) G-P(sol) polarization free energy of solvation -22.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds