Wall clock time and date at job start Sat Mar 6 2021 20:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86303 * 109.46800 * 2 1 4 4 C 1.50696 * 109.46976 * 240.00377 * 2 1 3 5 5 C 1.35092 * 126.07596 * 105.23225 * 4 2 1 6 6 N 1.35035 * 107.97976 * 180.12494 * 5 4 2 7 7 C 1.46500 * 125.93378 * 179.83226 * 6 5 4 8 8 C 1.50705 * 109.47037 * 124.71321 * 7 6 5 9 9 O 1.21278 * 120.00292 * 0.02562 * 8 7 6 10 10 N 1.34783 * 119.99931 * 180.02562 * 8 7 6 11 11 C 1.46501 * 119.99693 * 184.92199 * 10 8 7 12 12 C 1.50702 * 112.84732 * 66.75433 * 11 10 8 13 13 C 1.38234 * 119.99583 * 194.72403 * 12 11 10 14 14 C 1.38234 * 120.00080 * 179.80723 * 13 12 11 15 15 C 1.38235 * 119.99587 * 0.42442 * 14 13 12 16 16 C 1.38232 * 120.00260 * 359.81262 * 15 14 13 17 17 C 1.38227 * 120.00137 * 15.00170 * 12 11 10 18 18 C 1.53775 * 113.61568 * 295.55559 * 11 10 8 19 19 C 1.53781 * 87.08072 * 270.88664 * 18 11 10 20 20 H 1.08997 * 113.61531 * 89.12037 * 19 18 11 21 21 F 1.39899 * 113.61218 * 220.01697 * 19 18 11 22 22 C 1.53776 * 87.08171 * 334.56896 * 19 18 11 23 23 N 1.40075 * 108.13919 * 359.56968 * 6 5 4 24 24 C 1.31624 * 108.10766 * 0.26823 * 23 6 5 25 25 C 1.48413 * 126.03923 * 179.97438 * 24 23 6 26 26 C 1.39325 * 120.12453 * 137.78267 * 25 24 23 27 27 C 1.38021 * 119.88028 * 179.71904 * 26 25 24 28 28 C 1.38317 * 120.11777 * 0.55403 * 27 26 25 29 29 C 1.38311 * 120.24376 * 359.72140 * 28 27 26 30 30 C 1.38027 * 120.12030 * 0.02562 * 29 28 27 31 31 H 0.96696 * 113.99892 * 299.99471 * 1 2 3 32 32 H 1.08997 * 109.47451 * 120.00302 * 2 1 3 33 33 H 1.48503 * 110.00232 * 300.00441 * 3 2 1 34 34 H 1.48501 * 109.99804 * 61.32313 * 3 2 1 35 35 H 1.08003 * 126.01063 * 359.97438 * 5 4 2 36 36 H 1.09002 * 109.46738 * 4.71952 * 7 6 5 37 37 H 1.08992 * 109.47428 * 244.71406 * 7 6 5 38 38 H 0.96992 * 119.99870 * 4.92152 * 10 8 7 39 39 H 1.07999 * 119.99904 * 0.02562 * 13 12 11 40 40 H 1.08000 * 120.00257 * 180.20710 * 14 13 12 41 41 H 1.08004 * 120.00251 * 179.78213 * 15 14 13 42 42 H 1.07998 * 120.00308 * 179.97438 * 16 15 14 43 43 H 1.08001 * 120.00491 * 359.97438 * 17 12 11 44 44 H 1.09004 * 113.61476 * 25.43317 * 18 11 10 45 45 H 1.09000 * 113.61571 * 156.33480 * 18 11 10 46 46 H 1.09008 * 113.61304 * 270.88616 * 22 19 18 47 47 H 1.09001 * 113.61742 * 139.98215 * 22 19 18 48 48 H 1.08007 * 120.05256 * 359.97031 * 26 25 24 49 49 H 1.08005 * 119.93734 * 180.27293 * 27 26 25 50 50 H 1.08008 * 119.87631 * 179.69741 * 28 27 26 51 51 H 1.08004 * 119.94241 * 180.02562 * 29 28 27 52 52 H 1.08001 * 120.06254 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7103 -1.2305 5 6 2.4669 -0.1251 -2.3239 6 7 2.7883 -1.0988 -3.2026 7 6 3.3925 -0.9006 -4.5224 8 6 4.6596 -1.7104 -4.6214 9 8 5.0220 -2.3869 -3.6823 10 7 5.3902 -1.6830 -5.7537 11 6 6.5620 -2.5516 -5.8906 12 6 6.2033 -4.0144 -5.9408 13 6 7.1833 -4.9728 -5.7620 14 6 6.8537 -6.3146 -5.8040 15 6 5.5456 -6.6981 -6.0335 16 6 4.5665 -5.7398 -6.2171 17 6 4.8954 -4.3979 -6.1712 18 6 7.6888 -2.2273 -4.8957 19 6 8.2282 -1.2442 -5.9481 20 1 7.8120 -0.2405 -5.8619 21 9 9.6230 -1.2478 -6.0554 22 6 7.5267 -2.1133 -7.0051 23 7 2.4491 -2.3316 -2.6307 24 6 1.9322 -2.1028 -1.4420 25 6 1.4372 -3.1305 -0.4926 26 6 1.7246 -3.0232 0.8665 27 6 1.2568 -3.9787 1.7458 28 6 0.5136 -5.0475 1.2784 29 6 0.2301 -5.1620 -0.0705 30 6 0.6885 -4.2094 -0.9580 31 1 -0.3933 0.4416 0.7651 32 1 1.7924 -0.5139 0.8899 33 1 1.5613 2.4680 -1.2084 34 1 1.5878 2.4585 1.2243 35 1 2.6104 0.9353 -2.4706 36 1 3.6246 0.1554 -4.6609 37 1 2.6938 -1.2234 -5.2941 38 1 5.1402 -1.0881 -6.4779 39 1 8.2059 -4.6732 -5.5860 40 1 7.6188 -7.0634 -5.6610 41 1 5.2886 -7.7465 -6.0698 42 1 3.5446 -6.0394 -6.3968 43 1 4.1304 -3.6492 -6.3149 44 1 7.3400 -1.7427 -3.9838 45 1 8.3550 -3.0679 -4.7014 46 1 8.1486 -2.9228 -7.3875 47 1 7.0470 -1.5368 -7.7961 48 1 2.3091 -2.1916 1.2317 49 1 1.4754 -3.8940 2.8001 50 1 0.1536 -5.7956 1.9693 51 1 -0.3510 -5.9984 -0.4301 52 1 0.4670 -4.3000 -2.0111 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12905100_12622748.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:39:07 Heat of formation + Delta-G solvation = 69.963761 kcal Electronic energy + Delta-G solvation = -38948.093151 eV Core-core repulsion = 33989.970558 eV Total energy + Delta-G solvation = -4958.122593 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 408.164 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -48.61502 -42.52267 -41.86500 -39.98573 -39.65970 -38.56620 -37.76509 -34.89056 -34.32859 -32.41379 -32.08433 -31.87611 -31.75435 -31.42369 -28.82375 -27.15191 -26.22897 -25.67495 -24.22453 -23.60129 -23.45453 -22.63702 -22.02818 -21.52055 -20.85873 -20.39145 -18.66512 -18.55922 -18.42373 -18.24736 -17.55533 -17.33323 -16.84450 -16.69636 -16.58412 -16.15955 -16.06110 -15.90784 -15.76957 -15.64014 -15.59652 -15.19737 -15.12535 -14.75411 -14.45297 -14.38825 -14.31708 -14.24755 -14.05852 -13.95099 -13.77866 -13.59987 -13.53690 -13.44802 -13.24753 -12.69763 -12.62007 -12.34893 -12.32222 -12.18946 -12.00204 -11.99066 -11.69620 -11.56188 -11.46325 -11.18212 -10.62460 -10.28985 -10.24373 -9.89726 -9.88881 -9.79045 -9.65754 -9.30273 -4.86496 0.10215 0.32775 0.42240 0.44754 0.79499 1.24309 1.38158 1.47771 1.63668 1.67121 1.96235 1.98934 2.69651 2.87637 3.16832 3.23495 3.26984 3.41563 3.48462 3.60276 3.62546 3.78105 3.82481 3.89333 3.94435 3.98587 4.00702 4.04410 4.10605 4.13073 4.15947 4.19028 4.24585 4.35604 4.49032 4.51799 4.54591 4.56066 4.58003 4.67354 4.69163 4.75547 4.84047 4.87678 4.97855 4.98171 5.00066 5.09663 5.10780 5.28009 5.32394 5.48157 5.54858 5.55192 5.55658 5.59699 5.63980 5.89171 6.01871 6.02232 6.43093 6.58317 6.70103 7.16501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.558 6.558 2 C -0.054 4.054 3 Si 0.768 3.232 4 C -0.225 4.225 5 C 0.073 3.927 6 N -0.358 5.358 7 C 0.108 3.892 8 C 0.500 3.500 9 O -0.538 6.538 10 N -0.696 5.696 11 C 0.201 3.799 12 C -0.080 4.080 13 C -0.125 4.125 14 C -0.128 4.128 15 C -0.133 4.133 16 C -0.133 4.133 17 C -0.112 4.112 18 C -0.162 4.162 19 C 0.069 3.931 20 H 0.136 0.864 21 F -0.221 7.221 22 C -0.138 4.138 23 N -0.287 5.287 24 C 0.108 3.892 25 C -0.025 4.025 26 C -0.106 4.106 27 C -0.122 4.122 28 C -0.120 4.120 29 C -0.128 4.128 30 C -0.115 4.115 31 H 0.389 0.611 32 H 0.076 0.924 33 H -0.274 1.274 34 H -0.287 1.287 35 H 0.215 0.785 36 H 0.180 0.820 37 H 0.139 0.861 38 H 0.426 0.574 39 H 0.132 0.868 40 H 0.138 0.862 41 H 0.134 0.866 42 H 0.128 0.872 43 H 0.122 0.878 44 H 0.075 0.925 45 H 0.095 0.905 46 H 0.106 0.894 47 H 0.120 0.880 48 H 0.137 0.863 49 H 0.150 0.850 50 H 0.147 0.853 51 H 0.140 0.860 52 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.627 5.693 -3.104 6.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.367 6.367 2 C -0.162 4.162 3 Si 0.670 3.330 4 C -0.236 4.236 5 C -0.072 4.072 6 N -0.139 5.139 7 C -0.016 4.016 8 C 0.285 3.715 9 O -0.412 6.412 10 N -0.352 5.352 11 C 0.114 3.886 12 C -0.081 4.081 13 C -0.143 4.143 14 C -0.146 4.146 15 C -0.151 4.151 16 C -0.151 4.151 17 C -0.130 4.130 18 C -0.200 4.200 19 C 0.033 3.967 20 H 0.153 0.847 21 F -0.201 7.201 22 C -0.176 4.176 23 N -0.108 5.108 24 C -0.058 4.058 25 C -0.027 4.027 26 C -0.125 4.125 27 C -0.140 4.140 28 C -0.138 4.138 29 C -0.145 4.145 30 C -0.134 4.134 31 H 0.238 0.762 32 H 0.094 0.906 33 H -0.200 1.200 34 H -0.213 1.213 35 H 0.231 0.769 36 H 0.197 0.803 37 H 0.156 0.844 38 H 0.266 0.734 39 H 0.150 0.850 40 H 0.155 0.845 41 H 0.152 0.848 42 H 0.146 0.854 43 H 0.140 0.860 44 H 0.093 0.907 45 H 0.113 0.887 46 H 0.125 0.875 47 H 0.138 0.862 48 H 0.154 0.846 49 H 0.168 0.832 50 H 0.165 0.835 51 H 0.158 0.842 52 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 1.191 4.892 -4.042 6.457 hybrid contribution -1.505 0.115 0.817 1.716 sum -0.314 5.007 -3.226 5.964 Atomic orbital electron populations 1.86598 1.19096 1.80649 1.50376 1.24479 0.83522 1.11792 0.96436 0.94284 0.89939 0.70986 0.77786 1.19591 1.12837 0.91821 0.99367 1.22738 0.98825 0.96617 0.89010 1.48074 1.47660 1.03502 1.14686 1.22010 0.92840 1.05003 0.81742 1.20964 0.85398 0.82432 0.82670 1.90859 1.70251 1.41609 1.38489 1.45414 1.27956 1.43149 1.18725 1.19521 0.84860 0.86326 0.97935 1.19795 0.93828 0.94521 0.99980 1.21159 0.99687 0.92988 1.00442 1.21405 0.97064 0.96413 0.99678 1.21438 0.93434 1.00375 0.99814 1.21385 1.00026 0.93470 1.00212 1.21004 0.95992 0.96167 0.99819 1.24030 0.97157 1.00314 0.98525 1.23331 0.74834 1.01184 0.97315 0.84652 1.92799 1.32575 1.98065 1.96703 1.23939 0.96271 1.00671 0.96727 1.77715 1.19531 1.03842 1.09714 1.20851 0.98490 0.93537 0.92908 1.17994 0.98961 0.93409 0.92326 1.21354 0.99748 0.99903 0.91539 1.21421 0.97707 0.94082 1.00770 1.21576 0.97950 0.98585 0.95713 1.21348 1.00265 0.99079 0.93856 1.21255 0.98113 0.94230 0.99794 0.76182 0.90577 1.20037 1.21348 0.76912 0.80262 0.84362 0.73413 0.85038 0.84461 0.84804 0.85396 0.85975 0.90668 0.88693 0.87521 0.86169 0.84575 0.83195 0.83545 0.84245 0.87038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -2.92 12.86 -148.98 -1.92 -4.83 16 2 C -0.05 -0.12 2.50 71.23 0.18 0.06 16 3 Si 0.77 -2.32 30.77 68.60 2.11 -0.21 16 4 C -0.22 -1.43 5.39 -19.95 -0.11 -1.53 16 5 C 0.07 0.08 9.96 83.48 0.83 0.92 16 6 N -0.36 -1.18 3.40 -351.90 -1.20 -2.38 16 7 C 0.11 -0.75 6.99 85.63 0.60 -0.15 16 8 C 0.50 -0.54 6.32 87.66 0.55 0.01 16 9 O -0.54 -5.79 14.18 -3.02 -0.04 -5.83 16 10 N -0.70 5.08 4.28 -423.92 -1.81 3.27 16 11 C 0.20 -0.49 0.93 3.38 0.00 -0.48 16 12 C -0.08 -0.27 4.78 -19.87 -0.09 -0.37 16 13 C -0.12 -0.53 8.80 22.27 0.20 -0.34 16 14 C -0.13 -0.58 10.05 22.27 0.22 -0.36 16 15 C -0.13 -0.68 10.05 22.27 0.22 -0.46 16 16 C -0.13 -0.76 10.05 22.27 0.22 -0.53 16 17 C -0.11 -0.53 8.91 22.27 0.20 -0.33 16 18 C -0.16 -0.09 6.64 31.12 0.21 0.11 16 19 C 0.07 -0.26 5.58 31.12 0.17 -0.09 16 20 H 0.14 -1.21 8.14 -2.39 -0.02 -1.23 16 21 F -0.22 -0.69 17.41 44.97 0.78 0.09 16 22 C -0.14 0.89 7.19 31.12 0.22 1.11 16 23 N -0.29 -3.58 11.67 -48.16 -0.56 -4.14 16 24 C 0.11 1.29 6.67 42.53 0.28 1.57 16 25 C -0.03 -0.29 5.75 -20.04 -0.12 -0.41 16 26 C -0.11 -0.79 8.89 22.48 0.20 -0.59 16 27 C -0.12 -0.51 10.03 22.24 0.22 -0.29 16 28 C -0.12 -0.51 10.04 22.31 0.22 -0.29 16 29 C -0.13 -0.88 10.03 22.24 0.22 -0.65 16 30 C -0.11 -1.29 9.78 22.48 0.22 -1.07 16 31 H 0.39 -1.13 8.74 -74.06 -0.65 -1.78 16 32 H 0.08 0.04 5.51 -2.39 -0.01 0.02 16 33 H -0.27 -0.09 7.04 99.48 0.70 0.61 16 34 H -0.29 -0.44 7.11 99.48 0.71 0.27 16 35 H 0.21 -1.62 6.35 -2.91 -0.02 -1.64 16 36 H 0.18 -3.17 8.07 -2.39 -0.02 -3.19 16 37 H 0.14 -1.50 8.14 -2.39 -0.02 -1.52 16 38 H 0.43 -6.80 8.67 -92.71 -0.80 -7.60 16 39 H 0.13 0.20 6.45 -2.91 -0.02 0.18 16 40 H 0.14 0.10 8.06 -2.91 -0.02 0.08 16 41 H 0.13 0.21 8.06 -2.91 -0.02 0.19 16 42 H 0.13 0.39 8.06 -2.91 -0.02 0.36 16 43 H 0.12 0.23 6.76 -2.91 -0.02 0.21 16 44 H 0.07 0.32 7.13 -2.39 -0.02 0.30 16 45 H 0.09 0.25 6.15 -2.39 -0.01 0.23 16 46 H 0.11 -0.48 7.84 -2.38 -0.02 -0.50 16 47 H 0.12 -1.46 8.09 -2.39 -0.02 -1.48 16 48 H 0.14 0.52 6.15 -2.91 -0.02 0.50 16 49 H 0.15 -0.22 8.06 -2.91 -0.02 -0.25 16 50 H 0.15 -0.15 8.06 -2.91 -0.02 -0.18 16 51 H 0.14 0.35 8.06 -2.91 -0.02 0.33 16 52 H 0.11 1.32 8.06 -2.91 -0.02 1.30 16 Total: 0.00 -34.81 432.62 1.83 -32.97 By element: Atomic # 1 Polarization: -14.36 SS G_CDS: -0.42 Total: -14.78 kcal Atomic # 6 Polarization: -9.04 SS G_CDS: 4.89 Total: -4.15 kcal Atomic # 7 Polarization: 0.31 SS G_CDS: -3.57 Total: -3.26 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: -1.96 Total: -10.66 kcal Atomic # 9 Polarization: -0.69 SS G_CDS: 0.78 Total: 0.09 kcal Atomic # 14 Polarization: -2.32 SS G_CDS: 2.11 Total: -0.21 kcal Total: -34.81 1.83 -32.97 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12905100_12622748.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.939 kcal (2) G-P(sol) polarization free energy of solvation -34.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds