Wall clock time and date at job start Sat Mar 6 2021 20:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86311 * 109.47055 * 2 1 4 4 C 1.50698 * 109.47451 * 120.00096 * 2 1 3 5 5 C 1.34829 * 125.65431 * 64.97314 * 4 2 1 6 6 C 1.40796 * 107.05339 * 180.02562 * 5 4 2 7 7 C 1.36111 * 106.73090 * 0.02562 * 6 5 4 8 8 C 1.47567 * 125.94223 * 180.02562 * 7 6 5 9 9 C 1.39570 * 119.95324 * 179.72895 * 8 7 6 10 10 C 1.38317 * 119.80830 * 179.72554 * 9 8 7 11 11 O 1.35682 * 120.13220 * 180.25064 * 10 9 8 12 12 C 1.40369 * 119.73039 * 0.56355 * 10 9 8 13 13 C 1.47288 * 120.05125 * 179.68241 * 12 10 9 14 14 O 1.21635 * 119.99452 * 0.02562 * 13 12 10 15 15 N 1.34767 * 120.00078 * 180.02562 * 13 12 10 16 16 C 1.46504 * 119.99920 * 175.03301 * 15 13 12 17 17 C 1.50704 * 112.85351 * 65.08847 * 16 15 13 18 18 C 1.38225 * 120.00086 * 197.58247 * 17 16 15 19 19 C 1.38238 * 120.00351 * 179.78977 * 18 17 16 20 20 C 1.38241 * 119.99420 * 0.44185 * 19 18 17 21 21 C 1.38241 * 119.99953 * 359.81044 * 20 19 18 22 22 C 1.38228 * 119.99701 * 17.85673 * 17 16 15 23 23 C 1.53791 * 113.61338 * 293.89385 * 16 15 13 24 24 C 1.53783 * 87.07830 * 270.88647 * 23 16 15 25 25 H 1.08997 * 113.61635 * 89.11544 * 24 23 16 26 26 F 1.39901 * 113.60934 * 220.01526 * 24 23 16 27 27 C 1.53783 * 113.61555 * 196.28831 * 16 15 13 28 28 C 1.39918 * 119.90199 * 359.70740 * 12 10 9 29 29 C 1.36388 * 120.19066 * 359.97438 * 28 12 10 30 30 O 1.34232 * 125.65398 * 244.97728 * 4 2 1 31 31 H 0.96699 * 114.00028 * 59.99909 * 1 2 3 32 32 H 1.08997 * 109.47300 * 240.00706 * 2 1 3 33 33 H 1.48494 * 109.99796 * 298.68279 * 3 2 1 34 34 H 1.48501 * 109.99826 * 60.00100 * 3 2 1 35 35 H 1.08000 * 126.47516 * 0.02848 * 5 4 2 36 36 H 1.07994 * 126.63641 * 180.26742 * 6 5 4 37 37 H 1.07996 * 120.09087 * 359.97403 * 9 8 7 38 38 H 0.96700 * 113.99804 * 270.31339 * 11 10 9 39 39 H 0.97000 * 120.00371 * 355.02846 * 15 13 12 40 40 H 1.08008 * 120.00582 * 0.02562 * 18 17 16 41 41 H 1.07992 * 120.00373 * 180.27489 * 19 18 17 42 42 H 1.07995 * 120.00242 * 179.83868 * 20 19 18 43 43 H 1.08000 * 119.99810 * 180.02562 * 21 20 19 44 44 H 1.08002 * 120.00234 * 359.97438 * 22 17 16 45 45 H 1.09004 * 113.60759 * 25.43192 * 23 16 15 46 46 H 1.08993 * 113.61288 * 156.33065 * 23 16 15 47 47 H 1.08996 * 113.61363 * 203.65683 * 27 16 15 48 48 H 1.09002 * 113.61492 * 334.56830 * 27 16 15 49 49 H 1.08006 * 119.90514 * 179.97438 * 28 12 10 50 50 H 1.08001 * 119.86115 * 179.97438 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7566 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 1.7564 -2.0178 1.5095 6 6 2.3799 -2.2627 2.7480 7 6 2.9069 -1.0781 3.1623 8 6 3.6561 -0.8539 4.4137 9 6 4.1480 0.4175 4.7132 10 6 4.8449 0.6255 5.8897 11 8 5.3216 1.8599 6.1898 12 6 5.0627 -0.4469 6.7687 13 6 5.8100 -0.2349 8.0201 14 8 6.2384 0.8704 8.2927 15 7 6.0189 -1.2654 8.8631 16 6 6.8537 -1.0808 10.0529 17 6 6.2572 -0.1128 11.0420 18 6 7.0518 0.4510 12.0224 19 6 6.5056 1.3423 12.9270 20 6 5.1627 1.6626 12.8568 21 6 4.3669 1.0946 11.8795 22 6 4.9141 0.2067 10.9723 23 6 8.3313 -0.8006 9.7313 24 6 8.5433 -2.3236 9.7533 25 1 8.3840 -2.8007 8.7863 26 9 9.7407 -2.7139 10.3625 27 6 7.3213 -2.4009 10.6882 28 6 4.5693 -1.7179 6.4542 29 6 3.8770 -1.9176 5.2962 30 8 2.6272 -0.1464 2.2302 31 1 -0.3933 0.4417 -0.7650 32 1 1.7923 -0.5137 -0.8900 33 1 1.5878 2.4586 -1.2242 34 1 1.5614 2.4679 1.2085 35 1 1.2363 -2.7408 0.8986 36 1 2.4334 -3.2083 3.2667 37 1 3.9814 1.2373 4.0302 38 1 6.2143 2.0280 5.8584 39 1 5.6166 -2.1293 8.6822 40 1 8.1003 0.1983 12.0794 41 1 7.1274 1.7862 13.6903 42 1 4.7353 2.3568 13.5651 43 1 3.3178 1.3451 11.8243 44 1 4.2924 -0.2370 10.2087 45 1 8.4870 -0.3523 8.7500 46 1 8.8591 -0.2747 10.5267 47 1 7.5736 -2.3117 11.7447 48 1 6.6624 -3.2437 10.4789 49 1 4.7372 -2.5432 7.1303 50 1 3.4989 -2.9009 5.0585 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12905100_12807986.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:39:17 Heat of formation + Delta-G solvation = -34.880194 kcal Electronic energy + Delta-G solvation = -38288.383404 eV Core-core repulsion = 33130.277111 eV Total energy + Delta-G solvation = -5158.106292 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 410.141 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -48.59269 -43.74652 -42.11807 -40.89998 -39.38017 -38.43762 -38.12170 -37.85751 -34.69364 -34.18314 -33.18702 -31.93563 -31.75649 -31.30802 -30.48778 -27.28450 -27.09374 -25.88621 -24.44307 -24.04112 -23.55335 -22.73051 -22.38804 -21.98286 -21.34457 -20.37481 -19.65960 -18.83694 -18.81461 -18.54196 -18.04914 -17.36098 -17.22358 -17.11819 -16.68487 -16.62050 -16.40153 -16.16719 -16.01351 -15.88752 -15.80152 -15.66083 -15.44460 -15.04905 -14.74854 -14.45969 -14.36942 -14.19475 -14.11522 -14.00875 -13.97733 -13.89335 -13.55934 -13.53869 -13.46744 -13.30116 -12.87025 -12.72677 -12.58612 -12.28290 -12.17493 -11.96658 -11.88189 -11.66381 -11.41630 -11.13379 -10.91083 -10.77523 -10.56715 -10.26275 -9.95790 -9.85907 -9.61144 -9.01485 -5.01636 -0.79543 0.14533 0.36848 0.46075 0.62187 1.10583 1.34281 1.44311 1.68715 1.87507 1.89345 1.92733 2.63950 2.73172 3.00158 3.17910 3.24051 3.24758 3.43947 3.49883 3.54256 3.61059 3.68714 3.79933 3.84369 3.97454 3.98967 4.02265 4.04775 4.15677 4.20400 4.22627 4.31191 4.41229 4.51290 4.57700 4.60092 4.64160 4.67302 4.70151 4.71947 4.79798 4.83433 4.89045 5.00958 5.02919 5.06167 5.10510 5.13882 5.21788 5.35371 5.43276 5.51854 5.53639 5.58667 5.67620 5.97873 6.05683 6.43931 6.48198 6.69631 7.17513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.554 6.554 2 C -0.038 4.038 3 Si 0.756 3.244 4 C -0.016 4.016 5 C -0.182 4.182 6 C -0.170 4.170 7 C 0.002 3.998 8 C 0.026 3.974 9 C -0.156 4.156 10 C 0.163 3.837 11 O -0.496 6.496 12 C -0.177 4.177 13 C 0.561 3.439 14 O -0.540 6.540 15 N -0.697 5.697 16 C 0.198 3.802 17 C -0.076 4.076 18 C -0.123 4.123 19 C -0.126 4.126 20 C -0.132 4.132 21 C -0.135 4.135 22 C -0.112 4.112 23 C -0.162 4.162 24 C 0.069 3.931 25 H 0.134 0.866 26 F -0.219 7.219 27 C -0.139 4.139 28 C -0.050 4.050 29 C -0.109 4.109 30 O -0.180 6.180 31 H 0.406 0.594 32 H 0.132 0.868 33 H -0.261 1.261 34 H -0.315 1.315 35 H 0.169 0.831 36 H 0.186 0.814 37 H 0.133 0.867 38 H 0.408 0.592 39 H 0.419 0.581 40 H 0.135 0.865 41 H 0.139 0.861 42 H 0.135 0.865 43 H 0.127 0.873 44 H 0.116 0.884 45 H 0.075 0.925 46 H 0.102 0.898 47 H 0.110 0.890 48 H 0.118 0.882 49 H 0.176 0.824 50 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.417 -7.699 -4.073 8.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.366 6.366 2 C -0.147 4.147 3 Si 0.660 3.340 4 C -0.066 4.066 5 C -0.201 4.201 6 C -0.189 4.189 7 C -0.047 4.047 8 C 0.025 3.975 9 C -0.175 4.175 10 C 0.116 3.884 11 O -0.309 6.309 12 C -0.181 4.181 13 C 0.349 3.651 14 O -0.416 6.416 15 N -0.352 5.352 16 C 0.110 3.890 17 C -0.077 4.077 18 C -0.141 4.141 19 C -0.144 4.144 20 C -0.150 4.150 21 C -0.152 4.152 22 C -0.130 4.130 23 C -0.201 4.201 24 C 0.033 3.967 25 H 0.151 0.849 26 F -0.200 7.200 27 C -0.177 4.177 28 C -0.068 4.068 29 C -0.127 4.127 30 O -0.078 6.078 31 H 0.258 0.742 32 H 0.149 0.851 33 H -0.186 1.186 34 H -0.243 1.243 35 H 0.187 0.813 36 H 0.203 0.797 37 H 0.151 0.849 38 H 0.268 0.732 39 H 0.259 0.741 40 H 0.153 0.847 41 H 0.157 0.843 42 H 0.153 0.847 43 H 0.145 0.855 44 H 0.134 0.866 45 H 0.094 0.906 46 H 0.120 0.880 47 H 0.128 0.872 48 H 0.137 0.863 49 H 0.193 0.807 50 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 0.211 -6.018 -3.073 6.760 hybrid contribution -1.056 0.211 -0.763 1.320 sum -0.845 -5.807 -3.836 7.011 Atomic orbital electron populations 1.86517 1.17421 1.80787 1.51890 1.23947 0.84582 1.11928 0.94227 0.93818 0.90654 0.72487 0.77031 1.21847 1.00103 0.93248 0.91423 1.21845 1.03806 0.95814 0.98594 1.22260 1.00674 0.98971 0.96969 1.20634 1.04949 0.87967 0.91126 1.17965 0.95220 0.94037 0.90234 1.21566 1.01269 0.97644 0.97029 1.18466 0.94565 0.84173 0.91181 1.84745 1.37319 1.28602 1.80194 1.20493 1.05569 0.95235 0.96794 1.18121 0.79407 0.84180 0.83343 1.90875 1.50700 1.24573 1.75497 1.45439 1.52123 1.14434 1.23160 1.19604 0.89228 0.95694 0.84457 1.19742 0.93785 0.98190 0.96018 1.21176 1.00193 0.97515 0.95251 1.21408 0.95593 0.97932 0.99503 1.21432 0.94456 1.00194 0.98919 1.21375 1.00629 0.97498 0.95748 1.20976 0.95106 0.98333 0.98608 1.24072 0.95096 0.96725 1.04160 1.23357 0.80139 0.95267 0.97945 0.84857 1.92801 1.49613 1.92328 1.85238 1.24002 0.96432 0.96148 1.01091 1.21205 0.93783 0.95176 0.96674 1.21066 0.99289 0.99311 0.93012 1.83912 1.58321 1.38783 1.26830 0.74199 0.85068 1.18584 1.24314 0.81328 0.79680 0.84890 0.73182 0.74080 0.84746 0.84318 0.84742 0.85466 0.86598 0.90624 0.87956 0.87175 0.86323 0.80669 0.81189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.34 12.86 -148.98 -1.92 -2.25 16 2 C -0.04 0.06 2.97 71.24 0.21 0.27 16 3 Si 0.76 -0.34 32.11 68.60 2.20 1.86 16 4 C -0.02 -0.05 6.24 24.90 0.16 0.10 16 5 C -0.18 -0.19 10.78 22.11 0.24 0.05 16 6 C -0.17 0.13 10.26 22.40 0.23 0.36 16 7 C 0.00 0.01 7.02 24.24 0.17 0.18 16 8 C 0.03 0.02 5.87 -20.08 -0.12 -0.10 16 9 C -0.16 -0.59 9.65 22.61 0.22 -0.37 16 10 C 0.16 0.76 6.71 22.81 0.15 0.91 16 11 O -0.50 -3.73 11.56 -69.00 -0.80 -4.53 16 12 C -0.18 -0.12 5.89 -19.97 -0.12 -0.24 16 13 C 0.56 1.68 6.33 86.62 0.55 2.23 16 14 O -0.54 -6.27 13.64 16.85 0.23 -6.04 16 15 N -0.70 2.71 4.24 -427.24 -1.81 0.90 16 16 C 0.20 -0.26 0.92 3.39 0.00 -0.26 16 17 C -0.08 -0.31 4.51 -19.87 -0.09 -0.40 16 18 C -0.12 -0.49 8.94 22.27 0.20 -0.29 16 19 C -0.13 -0.53 10.05 22.27 0.22 -0.30 16 20 C -0.13 -0.66 10.05 22.27 0.22 -0.44 16 21 C -0.13 -0.84 10.05 22.27 0.22 -0.61 16 22 C -0.11 -0.67 8.64 22.27 0.19 -0.48 16 23 C -0.16 -0.04 6.72 31.12 0.21 0.17 16 24 C 0.07 -0.24 5.58 31.21 0.17 -0.07 16 25 H 0.13 -1.08 8.14 -2.39 -0.02 -1.10 16 26 F -0.22 -0.63 17.41 44.97 0.78 0.15 16 27 C -0.14 0.81 7.21 31.21 0.23 1.04 16 28 C -0.05 0.34 9.46 22.25 0.21 0.55 16 29 C -0.11 0.62 9.48 22.26 0.21 0.83 16 30 O -0.18 -1.03 8.79 -5.96 -0.05 -1.09 16 31 H 0.41 -3.44 8.74 -74.06 -0.65 -4.09 16 32 H 0.13 -1.07 7.96 -2.39 -0.02 -1.09 16 33 H -0.26 -0.23 7.11 99.48 0.71 0.48 16 34 H -0.31 -3.26 7.11 99.48 0.71 -2.55 16 35 H 0.17 -0.43 8.06 -2.91 -0.02 -0.45 16 36 H 0.19 -1.44 7.24 -2.91 -0.02 -1.46 16 37 H 0.13 0.62 7.89 -2.91 -0.02 0.59 16 38 H 0.41 0.13 9.06 -74.06 -0.67 -0.54 16 39 H 0.42 -4.81 6.68 -92.71 -0.62 -5.43 16 40 H 0.13 0.10 6.29 -2.91 -0.02 0.08 16 41 H 0.14 0.01 8.06 -2.91 -0.02 -0.01 16 42 H 0.13 0.17 8.06 -2.91 -0.02 0.15 16 43 H 0.13 0.45 8.06 -2.91 -0.02 0.43 16 44 H 0.12 0.53 6.89 -2.91 -0.02 0.51 16 45 H 0.07 0.24 7.57 -2.39 -0.02 0.22 16 46 H 0.10 0.12 6.02 -2.39 -0.01 0.11 16 47 H 0.11 -0.50 7.93 -2.39 -0.02 -0.52 16 48 H 0.12 -1.34 8.09 -2.39 -0.02 -1.36 16 49 H 0.18 -2.70 6.39 -2.91 -0.02 -2.72 16 50 H 0.17 -2.06 6.95 -2.91 -0.02 -2.08 16 Total: 0.00 -30.20 422.24 1.49 -28.71 By element: Atomic # 1 Polarization: -20.00 SS G_CDS: -0.85 Total: -20.85 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: 3.70 Total: 3.13 kcal Atomic # 7 Polarization: 2.71 SS G_CDS: -1.81 Total: 0.90 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: -2.54 Total: -13.90 kcal Atomic # 9 Polarization: -0.63 SS G_CDS: 0.78 Total: 0.15 kcal Atomic # 14 Polarization: -0.34 SS G_CDS: 2.20 Total: 1.86 kcal Total: -30.20 1.49 -28.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12905100_12807986.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.168 kcal (2) G-P(sol) polarization free energy of solvation -30.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds