Wall clock time and date at job start Sat Mar 6 2021 20:39:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86294 * 109.47458 * 2 1 4 4 C 1.50703 * 109.46786 * 120.00095 * 2 1 3 5 5 C 1.38334 * 119.87350 * 64.99945 * 4 2 1 6 6 C 1.38003 * 120.12553 * 180.02562 * 5 4 2 7 7 C 1.39400 * 119.87218 * 359.97438 * 6 5 4 8 8 C 1.48276 * 120.12806 * 180.02562 * 7 6 5 9 9 C 1.39501 * 119.97682 * 180.02562 * 8 7 6 10 10 C 1.37667 * 120.02088 * 180.02562 * 9 8 7 11 11 C 1.39701 * 119.98039 * 0.02562 * 10 9 8 12 12 C 1.47718 * 120.02632 * 179.97438 * 11 10 9 13 13 O 1.21575 * 120.00294 * 359.97438 * 12 11 10 14 14 N 1.34781 * 120.00093 * 179.97438 * 12 11 10 15 15 C 1.46502 * 120.00060 * 185.03684 * 14 12 11 16 16 C 1.50707 * 112.84688 * 294.69047 * 15 14 12 17 17 C 1.38231 * 119.99616 * 133.77593 * 16 15 14 18 18 C 1.38236 * 120.00143 * 179.97438 * 17 16 15 19 19 C 1.38241 * 119.99713 * 0.02562 * 18 17 16 20 20 C 1.38234 * 119.99626 * 359.97438 * 19 18 17 21 21 C 1.38228 * 120.00655 * 0.02830 * 20 19 18 22 22 C 1.53780 * 113.61202 * 163.49883 * 15 14 12 23 23 C 1.53776 * 87.07792 * 270.79688 * 22 15 14 24 24 H 1.08998 * 113.61593 * 89.12232 * 23 22 15 25 25 F 1.39909 * 113.61665 * 219.93605 * 23 22 15 26 26 C 1.53778 * 87.08608 * 334.56696 * 23 22 15 27 27 C 1.39711 * 119.94860 * 0.25545 * 11 10 9 28 28 C 1.37659 * 119.97592 * 359.46597 * 27 11 10 29 29 C 1.39398 * 119.74735 * 0.27857 * 7 6 5 30 30 C 1.38008 * 119.87162 * 359.42464 * 29 7 6 31 31 H 0.96705 * 114.00249 * 59.99847 * 1 2 3 32 32 H 1.08997 * 109.47119 * 239.99674 * 2 1 3 33 33 H 1.48506 * 109.99760 * 298.68013 * 3 2 1 34 34 H 1.48495 * 110.00066 * 59.99752 * 3 2 1 35 35 H 1.08002 * 119.93639 * 359.97438 * 5 4 2 36 36 H 1.07995 * 120.06269 * 180.02562 * 6 5 4 37 37 H 1.07996 * 119.99065 * 359.97438 * 9 8 7 38 38 H 1.08008 * 120.00724 * 179.97438 * 10 9 8 39 39 H 0.97000 * 119.99875 * 5.04297 * 14 12 11 40 40 H 1.08005 * 120.00423 * 359.97438 * 17 16 15 41 41 H 1.08000 * 120.00169 * 179.97438 * 18 17 16 42 42 H 1.07999 * 119.99478 * 179.70235 * 19 18 17 43 43 H 1.08004 * 119.99448 * 180.02562 * 20 19 18 44 44 H 1.08000 * 120.00164 * 179.97438 * 21 20 19 45 45 H 1.08993 * 113.61694 * 25.34807 * 22 15 14 46 46 H 1.09007 * 113.61047 * 156.17041 * 22 15 14 47 47 H 1.08997 * 113.61620 * 270.88884 * 26 23 22 48 48 H 1.09000 * 113.61443 * 139.97355 * 26 23 22 49 49 H 1.08005 * 120.00890 * 179.72208 * 27 11 10 50 50 H 1.07997 * 119.98897 * 180.27862 * 28 27 11 51 51 H 1.08000 * 120.06655 * 179.72416 * 29 7 6 52 52 H 1.07999 * 119.93911 * 180.31447 * 30 29 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9312 -0.7105 1.2305 5 6 1.6829 -2.0612 1.3958 6 6 2.1399 -2.7169 2.5209 7 6 2.8535 -2.0155 3.4914 8 6 3.3478 -2.7144 4.7021 9 6 4.0611 -2.0092 5.6717 10 6 4.5208 -2.6574 6.7958 11 6 4.2733 -4.0218 6.9653 12 6 4.7666 -4.7184 8.1709 13 8 5.3887 -4.1044 9.0160 14 7 4.5270 -6.0346 8.3342 15 6 4.9187 -6.7017 9.5783 16 6 6.4118 -6.7336 9.7802 17 6 6.9507 -6.3944 11.0071 18 6 8.3203 -6.4241 11.1925 19 6 9.1509 -6.7925 10.1507 20 6 8.6119 -7.1317 8.9238 21 6 7.2425 -7.1019 8.7384 22 6 4.2397 -8.0658 9.7860 23 6 3.1046 -7.3050 10.4912 24 1 2.3160 -6.9730 9.8160 25 9 2.6095 -7.9606 11.6237 26 6 4.1405 -6.2147 10.8121 27 6 3.5638 -4.7282 5.9909 28 6 3.1001 -4.0770 4.8703 29 6 3.0962 -0.6533 3.3219 30 6 2.6396 -0.0094 2.1899 31 1 -0.3934 0.4417 -0.7651 32 1 1.7923 -0.5139 -0.8899 33 1 1.5879 2.4585 -1.2243 34 1 1.5615 2.4678 1.2084 35 1 1.1295 -2.6036 0.6434 36 1 1.9458 -3.7716 2.6487 37 1 4.2535 -0.9548 5.5399 38 1 5.0735 -2.1113 7.5462 39 1 4.0953 -6.5403 7.6279 40 1 6.3018 -6.1062 11.8209 41 1 8.7413 -6.1588 12.1510 42 1 10.2212 -6.8111 10.2942 43 1 9.2609 -7.4199 8.1100 44 1 6.8214 -7.3665 7.7797 45 1 3.9322 -8.5464 8.8573 46 1 4.7946 -8.7338 10.4448 47 1 4.6675 -6.3763 11.7524 48 1 3.7528 -5.2010 10.7115 49 1 3.3758 -5.7841 6.1188 50 1 2.5478 -4.6219 4.1190 51 1 3.6447 -0.1038 4.0728 52 1 2.8314 1.0449 2.0551 There are 73 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 73 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12905100_13158362.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:39:25 Heat of formation + Delta-G solvation = 12.067341 kcal Electronic energy + Delta-G solvation = -36302.491924 eV Core-core repulsion = 31500.022054 eV Total energy + Delta-G solvation = -4802.469870 eV No. of doubly occupied orbitals = 73 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 404.157 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -48.62924 -42.03046 -41.03027 -40.16107 -39.17531 -38.44018 -37.64399 -34.70812 -33.83283 -32.55449 -31.98017 -31.83276 -31.55663 -30.76823 -27.32722 -27.11148 -25.88891 -24.64561 -24.39174 -23.43194 -22.72381 -22.56084 -22.26088 -21.33441 -20.39852 -19.25190 -18.57613 -18.53801 -18.05062 -17.45794 -17.18477 -16.91804 -16.68791 -16.53971 -16.24220 -16.05874 -15.81224 -15.66019 -15.55067 -15.38679 -15.35861 -15.03998 -14.93166 -14.69648 -14.40479 -14.35053 -14.11350 -14.02075 -13.96978 -13.74407 -13.70775 -13.47886 -13.35098 -13.21902 -12.90215 -12.65782 -12.52066 -12.23417 -12.08911 -11.92450 -11.90133 -11.72789 -11.61690 -11.41392 -11.09990 -10.75779 -10.47330 -10.28813 -10.05151 -9.95113 -9.84704 -9.64745 -9.06709 -4.94937 -0.68116 0.36160 0.36518 0.40626 0.47393 0.50644 1.28000 1.57284 1.79295 1.90235 1.92419 2.58383 2.76683 2.98806 3.14530 3.22015 3.36298 3.41196 3.44745 3.48294 3.62058 3.69320 3.81215 3.85650 3.88711 3.99542 4.01582 4.06077 4.08189 4.17017 4.22821 4.26516 4.29480 4.36308 4.44795 4.51569 4.57549 4.60244 4.64452 4.65710 4.68859 4.70677 4.81147 4.89420 4.92447 5.01734 5.04194 5.08659 5.13091 5.14210 5.21442 5.27290 5.36619 5.42213 5.50844 5.52906 5.59829 5.64988 5.65860 5.80580 5.93000 6.07051 6.42231 6.56345 7.13559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.558 6.558 2 C -0.085 4.085 3 Si 0.758 3.242 4 C -0.082 4.082 5 C -0.102 4.102 6 C -0.107 4.107 7 C -0.061 4.061 8 C -0.022 4.022 9 C -0.124 4.124 10 C -0.070 4.070 11 C -0.149 4.149 12 C 0.562 3.438 13 O -0.560 6.560 14 N -0.693 5.693 15 C 0.197 3.803 16 C -0.080 4.080 17 C -0.121 4.121 18 C -0.132 4.132 19 C -0.130 4.130 20 C -0.131 4.131 21 C -0.114 4.114 22 C -0.137 4.137 23 C 0.067 3.933 24 H 0.131 0.869 25 F -0.219 7.219 26 C -0.168 4.168 27 C -0.073 4.073 28 C -0.119 4.119 29 C -0.108 4.108 30 C -0.124 4.124 31 H 0.395 0.605 32 H 0.098 0.902 33 H -0.287 1.287 34 H -0.300 1.300 35 H 0.135 0.865 36 H 0.150 0.850 37 H 0.145 0.855 38 H 0.125 0.875 39 H 0.419 0.581 40 H 0.126 0.874 41 H 0.133 0.867 42 H 0.136 0.864 43 H 0.137 0.863 44 H 0.133 0.867 45 H 0.120 0.880 46 H 0.109 0.891 47 H 0.104 0.896 48 H 0.073 0.927 49 H 0.161 0.839 50 H 0.157 0.843 51 H 0.145 0.855 52 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.441 -3.097 -6.897 7.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.368 6.368 2 C -0.194 4.194 3 Si 0.664 3.336 4 C -0.082 4.082 5 C -0.120 4.120 6 C -0.124 4.124 7 C -0.061 4.061 8 C -0.022 4.022 9 C -0.142 4.142 10 C -0.089 4.089 11 C -0.153 4.153 12 C 0.351 3.649 13 O -0.439 6.439 14 N -0.347 5.347 15 C 0.110 3.890 16 C -0.081 4.081 17 C -0.140 4.140 18 C -0.150 4.150 19 C -0.148 4.148 20 C -0.148 4.148 21 C -0.132 4.132 22 C -0.175 4.175 23 C 0.031 3.969 24 H 0.149 0.851 25 F -0.200 7.200 26 C -0.206 4.206 27 C -0.091 4.091 28 C -0.137 4.137 29 C -0.126 4.126 30 C -0.142 4.142 31 H 0.245 0.755 32 H 0.116 0.884 33 H -0.214 1.214 34 H -0.228 1.228 35 H 0.153 0.847 36 H 0.168 0.832 37 H 0.162 0.838 38 H 0.143 0.857 39 H 0.259 0.741 40 H 0.143 0.857 41 H 0.151 0.849 42 H 0.154 0.846 43 H 0.155 0.845 44 H 0.151 0.849 45 H 0.138 0.862 46 H 0.127 0.873 47 H 0.123 0.877 48 H 0.092 0.908 49 H 0.179 0.821 50 H 0.174 0.826 51 H 0.163 0.837 52 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 0.724 -2.180 -5.729 6.172 hybrid contribution -1.213 0.179 -0.422 1.297 sum -0.489 -2.001 -6.151 6.487 Atomic orbital electron populations 1.86545 1.18496 1.80645 1.51110 1.24980 0.84055 1.11548 0.98777 0.94173 0.90501 0.72640 0.76281 1.19603 0.98335 0.94613 0.95615 1.21139 0.98750 0.93912 0.98212 1.21535 0.96759 1.01135 0.92984 1.18942 0.99273 0.93719 0.94124 1.19130 0.96016 0.94043 0.93003 1.21365 0.98390 1.01174 0.93239 1.21224 0.96910 0.93550 0.97209 1.19960 1.04321 0.95009 0.95964 1.18482 0.78456 0.82029 0.85942 1.90811 1.40725 1.67007 1.45309 1.45469 1.62325 1.08606 1.18316 1.19593 0.89845 0.94458 0.85076 1.19699 0.94254 0.99850 0.94271 1.21265 0.95679 0.99437 0.97578 1.21399 0.93629 0.99924 0.99999 1.21461 1.00762 0.99169 0.93442 1.21424 0.95487 0.99989 0.97947 1.21094 0.93607 0.99731 0.98790 1.23894 0.95159 0.94781 1.03666 1.23291 0.95638 0.93006 0.84985 0.85118 1.92800 1.89876 1.82704 1.54644 1.24080 0.97250 0.99890 0.99409 1.21489 0.94616 1.00925 0.92076 1.21477 1.00276 0.93361 0.98588 1.21450 0.99488 0.93883 0.97759 1.21122 0.98995 1.00144 0.93890 0.75461 0.88448 1.21417 1.22817 0.84693 0.83219 0.83756 0.85672 0.74081 0.85665 0.84899 0.84639 0.84478 0.84948 0.86220 0.87308 0.87731 0.90781 0.82116 0.82568 0.83710 0.84402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.79 12.81 -148.98 -1.91 -2.70 16 2 C -0.08 0.12 2.79 71.24 0.20 0.32 16 3 Si 0.76 -1.70 29.84 68.60 2.05 0.35 16 4 C -0.08 -0.09 5.39 -19.82 -0.11 -0.20 16 5 C -0.10 -0.02 9.67 22.24 0.21 0.19 16 6 C -0.11 0.14 9.43 22.49 0.21 0.36 16 7 C -0.06 0.00 5.88 -20.05 -0.12 -0.12 16 8 C -0.02 0.01 5.88 -20.00 -0.12 -0.10 16 9 C -0.12 -0.05 9.41 22.44 0.21 0.16 16 10 C -0.07 -0.22 9.58 22.49 0.22 0.00 16 11 C -0.15 -0.17 5.88 -20.06 -0.12 -0.28 16 12 C 0.56 2.16 7.26 86.75 0.63 2.79 16 13 O -0.56 -7.06 15.13 -3.95 -0.06 -7.12 16 14 N -0.69 2.11 4.78 -426.86 -2.04 0.07 16 15 C 0.20 -0.13 0.82 3.39 0.00 -0.13 16 16 C -0.08 -0.30 4.24 -19.86 -0.08 -0.38 16 17 C -0.12 -0.69 9.22 22.27 0.21 -0.48 16 18 C -0.13 -0.65 10.05 22.27 0.22 -0.42 16 19 C -0.13 -0.49 10.05 22.27 0.22 -0.27 16 20 C -0.13 -0.40 10.05 22.27 0.22 -0.18 16 21 C -0.11 -0.32 9.46 22.27 0.21 -0.10 16 22 C -0.14 0.67 7.25 31.12 0.23 0.90 16 23 C 0.07 -0.12 5.58 31.12 0.17 0.05 16 24 H 0.13 -0.79 8.14 -2.39 -0.02 -0.81 16 25 F -0.22 -1.01 17.41 44.97 0.78 -0.22 16 26 C -0.17 -0.27 6.44 31.12 0.20 -0.07 16 27 C -0.07 0.36 9.52 22.49 0.21 0.58 16 28 C -0.12 0.50 9.41 22.44 0.21 0.72 16 29 C -0.11 0.01 9.43 22.49 0.21 0.23 16 30 C -0.12 -0.04 8.65 22.24 0.19 0.15 16 31 H 0.39 -2.55 8.74 -74.05 -0.65 -3.20 16 32 H 0.10 -0.55 7.96 -2.39 -0.02 -0.57 16 33 H -0.29 -0.56 7.11 99.48 0.71 0.14 16 34 H -0.30 -1.57 7.05 99.48 0.70 -0.87 16 35 H 0.14 -0.26 8.06 -2.91 -0.02 -0.29 16 36 H 0.15 -0.98 6.19 -2.91 -0.02 -1.00 16 37 H 0.14 -0.41 6.19 -2.91 -0.02 -0.43 16 38 H 0.13 0.64 7.64 -2.91 -0.02 0.62 16 39 H 0.42 -4.35 6.69 -92.71 -0.62 -4.97 16 40 H 0.13 0.54 5.71 -2.91 -0.02 0.53 16 41 H 0.13 0.21 8.06 -2.91 -0.02 0.19 16 42 H 0.14 0.00 8.06 -2.91 -0.02 -0.03 16 43 H 0.14 -0.14 8.06 -2.91 -0.02 -0.16 16 44 H 0.13 -0.18 8.02 -2.91 -0.02 -0.21 16 45 H 0.12 -1.29 8.09 -2.39 -0.02 -1.31 16 46 H 0.11 -0.37 8.09 -2.38 -0.02 -0.39 16 47 H 0.10 0.25 5.86 -2.39 -0.01 0.24 16 48 H 0.07 0.36 7.57 -2.39 -0.02 0.34 16 49 H 0.16 -2.03 6.40 -2.91 -0.02 -2.05 16 50 H 0.16 -1.45 6.19 -2.91 -0.02 -1.47 16 51 H 0.15 -0.56 6.19 -2.91 -0.02 -0.58 16 52 H 0.14 -0.34 4.85 -2.91 -0.01 -0.36 16 Total: 0.00 -24.78 426.18 2.25 -22.53 By element: Atomic # 1 Polarization: -16.38 SS G_CDS: -0.23 Total: -16.61 kcal Atomic # 6 Polarization: 0.04 SS G_CDS: 3.66 Total: 3.70 kcal Atomic # 7 Polarization: 2.11 SS G_CDS: -2.04 Total: 0.07 kcal Atomic # 8 Polarization: -7.85 SS G_CDS: -1.97 Total: -9.82 kcal Atomic # 9 Polarization: -1.01 SS G_CDS: 0.78 Total: -0.22 kcal Atomic # 14 Polarization: -1.70 SS G_CDS: 2.05 Total: 0.35 kcal Total: -24.78 2.25 -22.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12905100_13158362.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.596 kcal (2) G-P(sol) polarization free energy of solvation -24.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds