Wall clock time and date at job start Sat Mar 6 2021 20:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42906 * 1 3 3 Si 1.86293 * 109.47129 * 2 1 4 4 C 1.50698 * 109.47098 * 239.99824 * 2 1 3 5 5 C 1.38562 * 120.32209 * 119.97663 * 4 2 1 6 6 N 1.31527 * 120.90349 * 179.76138 * 5 4 2 7 7 C 1.32718 * 121.63987 * 0.53084 * 6 5 4 8 8 C 1.48169 * 119.72323 * 179.74756 * 7 6 5 9 9 O 1.21510 * 120.00295 * 179.72060 * 8 7 6 10 10 N 1.34776 * 119.99722 * 359.73032 * 8 7 6 11 11 C 1.46506 * 119.99841 * 185.41506 * 10 8 7 12 12 C 1.50703 * 112.84848 * 284.40043 * 11 10 8 13 13 C 1.38236 * 119.99845 * 166.69570 * 12 11 10 14 14 C 1.38234 * 120.00088 * 179.74560 * 13 12 11 15 15 C 1.38241 * 119.99518 * 0.55055 * 14 13 12 16 16 C 1.38229 * 120.00132 * 359.70601 * 15 14 13 17 17 C 1.38235 * 120.00357 * 0.02562 * 16 15 14 18 18 C 1.54055 * 113.61141 * 153.09258 * 11 10 8 19 19 C 1.53783 * 86.98420 * 270.88350 * 18 11 10 20 20 H 1.09004 * 113.61645 * 89.16124 * 19 18 11 21 21 F 1.39898 * 113.61834 * 219.98173 * 19 18 11 22 22 C 1.53779 * 113.61534 * 55.60111 * 11 10 8 23 23 C 1.39309 * 120.55673 * 359.47512 * 7 6 5 24 24 C 1.38589 * 119.05560 * 0.25090 * 23 7 6 25 25 H 0.96693 * 113.99843 * 299.99799 * 1 2 3 26 26 H 1.08996 * 109.47119 * 119.99891 * 2 1 3 27 27 H 1.48506 * 110.00359 * 300.00097 * 3 2 1 28 28 H 1.48501 * 110.00265 * 61.31775 * 3 2 1 29 29 H 1.08002 * 119.54695 * 0.02878 * 5 4 2 30 30 H 0.96999 * 120.00538 * 5.41358 * 10 8 7 31 31 H 1.08000 * 119.99966 * 0.02562 * 13 12 11 32 32 H 1.08001 * 119.99954 * 180.27497 * 14 13 12 33 33 H 1.08000 * 119.99731 * 179.72471 * 15 14 13 34 34 H 1.08004 * 119.99798 * 180.02562 * 16 15 14 35 35 H 1.07994 * 120.00493 * 179.97438 * 17 16 15 36 36 H 1.08999 * 113.61259 * 156.38090 * 18 11 10 37 37 H 1.08999 * 113.69545 * 25.39589 * 18 11 10 38 38 H 1.09005 * 113.60932 * 334.56193 * 22 11 10 39 39 H 1.08998 * 113.69233 * 203.68021 * 22 11 10 40 40 H 1.07991 * 120.47371 * 180.23204 * 23 7 6 41 41 H 1.08005 * 120.75593 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7104 -1.2304 5 6 2.7280 -0.0434 -2.1471 6 7 3.1765 -0.6536 -3.2225 7 6 2.8790 -1.9214 -3.4787 8 6 3.4028 -2.5654 -4.7060 9 8 3.1377 -3.7273 -4.9430 10 7 4.1735 -1.8624 -5.5594 11 6 4.5932 -2.4600 -6.8294 12 6 5.6935 -3.4763 -6.6626 13 6 6.0136 -4.3257 -7.7051 14 6 7.0264 -5.2544 -7.5540 15 6 7.7113 -5.3412 -6.3563 16 6 7.3876 -4.4953 -5.3121 17 6 6.3786 -3.5629 -5.4651 18 6 4.8689 -1.4253 -7.9370 19 6 3.3817 -1.5474 -8.3087 20 1 2.7381 -0.8533 -7.7682 21 9 3.1465 -1.5446 -9.6878 22 6 3.4220 -2.9563 -7.6936 23 6 2.0829 -2.6534 -2.6006 24 6 1.6007 -2.0375 -1.4565 25 1 -0.3933 0.4416 0.7650 26 1 1.7924 -0.5138 0.8900 27 1 1.5615 2.4679 -1.2085 28 1 1.5879 2.4586 1.2242 29 1 2.9877 0.9906 -1.9741 30 1 4.4503 -0.9608 -5.3328 31 1 5.4756 -4.2608 -8.6393 32 1 7.2795 -5.9150 -8.3700 33 1 8.4996 -6.0697 -6.2367 34 1 7.9231 -4.5629 -4.3765 35 1 6.1254 -2.9024 -4.6491 36 1 5.5439 -1.7859 -8.7132 37 1 5.1449 -0.4412 -7.5583 38 1 2.5308 -3.2074 -7.1184 39 1 3.7008 -3.7349 -8.4036 40 1 1.8447 -3.6860 -2.8085 41 1 0.9808 -2.5791 -0.7572 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12905100_13287726.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:39:46 Heat of formation + Delta-G solvation = -5.887042 kcal Electronic energy + Delta-G solvation = -27648.502456 eV Core-core repulsion = 23603.807915 eV Total energy + Delta-G solvation = -4044.694541 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -48.65459 -42.24231 -41.33209 -39.72049 -38.53807 -37.93795 -34.74749 -33.61699 -33.02194 -31.92408 -31.72857 -28.05572 -27.18653 -25.92578 -25.01317 -23.99182 -23.42841 -22.56326 -21.98534 -20.39359 -19.40482 -18.70561 -18.60050 -18.05035 -17.36150 -17.00025 -16.79236 -16.63069 -16.34756 -16.23087 -15.89580 -15.71032 -15.54482 -15.43987 -15.01460 -14.67809 -14.38963 -14.27637 -14.04907 -14.00572 -13.95514 -13.88401 -13.54697 -13.37730 -12.60486 -12.55929 -12.30491 -12.12107 -11.96183 -11.77242 -11.57629 -11.35051 -11.09727 -10.81531 -10.58165 -10.38899 -10.17153 -9.85678 -9.63706 -4.93815 -0.61679 0.06323 0.35900 0.46333 1.22951 1.50353 1.60191 1.75465 1.95402 2.60466 2.71520 2.86951 3.14080 3.20044 3.24543 3.39438 3.48623 3.60772 3.64657 3.76864 3.78437 3.88930 3.99188 4.05363 4.14504 4.19020 4.24444 4.37584 4.48681 4.55531 4.56664 4.58500 4.63592 4.69905 4.79706 4.85771 4.97301 4.99265 5.02771 5.12736 5.30401 5.36043 5.52903 5.59616 5.65262 6.05912 6.20756 6.52992 6.57397 6.99332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.557 6.557 2 C -0.083 4.083 3 Si 0.762 3.238 4 C -0.103 4.103 5 C 0.101 3.899 6 N -0.455 5.455 7 C 0.062 3.938 8 C 0.577 3.423 9 O -0.546 6.546 10 N -0.683 5.683 11 C 0.194 3.806 12 C -0.083 4.083 13 C -0.121 4.121 14 C -0.125 4.125 15 C -0.129 4.129 16 C -0.130 4.130 17 C -0.116 4.116 18 C -0.137 4.137 19 C 0.065 3.935 20 H 0.121 0.879 21 F -0.217 7.217 22 C -0.159 4.159 23 C -0.115 4.115 24 C -0.055 4.055 25 H 0.400 0.600 26 H 0.109 0.891 27 H -0.292 1.292 28 H -0.282 1.282 29 H 0.186 0.814 30 H 0.425 0.575 31 H 0.134 0.866 32 H 0.140 0.860 33 H 0.138 0.862 34 H 0.134 0.866 35 H 0.117 0.883 36 H 0.117 0.883 37 H 0.113 0.887 38 H 0.075 0.925 39 H 0.109 0.891 40 H 0.149 0.851 41 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.075 3.474 5.249 7.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.368 6.368 2 C -0.192 4.192 3 Si 0.666 3.334 4 C -0.105 4.105 5 C -0.059 4.059 6 N -0.166 5.166 7 C -0.075 4.075 8 C 0.362 3.638 9 O -0.422 6.422 10 N -0.335 5.335 11 C 0.107 3.893 12 C -0.084 4.084 13 C -0.139 4.139 14 C -0.143 4.143 15 C -0.147 4.147 16 C -0.148 4.148 17 C -0.134 4.134 18 C -0.175 4.175 19 C 0.029 3.971 20 H 0.139 0.861 21 F -0.198 7.198 22 C -0.197 4.197 23 C -0.136 4.136 24 C -0.081 4.081 25 H 0.251 0.749 26 H 0.127 0.873 27 H -0.220 1.220 28 H -0.209 1.209 29 H 0.202 0.798 30 H 0.264 0.736 31 H 0.152 0.848 32 H 0.158 0.842 33 H 0.156 0.844 34 H 0.151 0.849 35 H 0.135 0.865 36 H 0.135 0.865 37 H 0.131 0.869 38 H 0.094 0.906 39 H 0.127 0.873 40 H 0.167 0.833 41 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 3.287 3.607 3.860 6.222 hybrid contribution -1.802 -0.390 1.233 2.218 sum 1.485 3.216 5.093 6.204 Atomic orbital electron populations 1.86530 1.17944 1.80841 1.51442 1.24927 0.84535 1.11998 0.97709 0.94232 0.90090 0.71843 0.77237 1.20802 0.97684 0.95012 0.97021 1.22944 0.94067 1.00400 0.88478 1.67520 1.20797 1.08578 1.19729 1.21056 0.99109 0.91381 0.95956 1.17989 0.78207 0.85200 0.82388 1.90820 1.59330 1.16839 1.75223 1.45393 1.51089 1.19438 1.17624 1.19734 0.92845 0.93536 0.83234 1.19760 0.96591 0.97277 0.94764 1.21152 0.98140 0.95653 0.98995 1.21426 0.95856 0.98634 0.98360 1.21476 1.00359 0.99425 0.93437 1.21396 0.97721 0.95857 0.99796 1.21023 0.96246 0.99114 0.97018 1.23997 0.96058 1.00591 0.96845 1.23259 0.98648 0.98909 0.76245 0.86144 1.92797 1.95860 1.97547 1.33549 1.24040 0.99167 0.97678 0.98834 1.22265 0.95526 1.02103 0.93721 1.21724 0.96002 0.94123 0.96204 0.74851 0.87282 1.21963 1.20907 0.79803 0.73601 0.84804 0.84168 0.84397 0.84853 0.86512 0.86480 0.86877 0.90613 0.87304 0.83311 0.82212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 1.40 12.75 -148.98 -1.90 -0.50 16 2 C -0.08 0.47 2.82 71.24 0.20 0.67 16 3 Si 0.76 -5.03 29.82 68.60 2.05 -2.99 16 4 C -0.10 0.18 5.44 -19.69 -0.11 0.07 16 5 C 0.10 -0.16 9.84 84.82 0.83 0.68 16 6 N -0.46 -0.63 9.55 -184.91 -1.77 -2.39 16 7 C 0.06 0.24 6.75 41.91 0.28 0.53 16 8 C 0.58 3.36 6.69 86.88 0.58 3.94 16 9 O -0.55 -6.61 14.72 -3.75 -0.06 -6.66 16 10 N -0.68 -0.65 4.03 -426.02 -1.72 -2.36 16 11 C 0.19 0.27 0.95 3.48 0.00 0.28 16 12 C -0.08 -0.35 4.99 -19.86 -0.10 -0.45 16 13 C -0.12 -0.41 8.73 22.27 0.19 -0.21 16 14 C -0.12 -0.34 10.05 22.27 0.22 -0.11 16 15 C -0.13 -0.37 10.05 22.27 0.22 -0.15 16 16 C -0.13 -0.51 10.05 22.27 0.22 -0.28 16 17 C -0.12 -0.58 9.15 22.27 0.20 -0.38 16 18 C -0.14 0.35 7.23 31.21 0.23 0.57 16 19 C 0.07 0.05 5.57 31.12 0.17 0.22 16 20 H 0.12 -0.18 8.14 -2.38 -0.02 -0.20 16 21 F -0.22 -1.28 17.41 44.97 0.78 -0.50 16 22 C -0.16 -0.53 6.58 31.12 0.20 -0.33 16 23 C -0.12 -0.31 9.63 22.61 0.22 -0.09 16 24 C -0.05 0.02 9.76 22.45 0.22 0.24 16 25 H 0.40 -4.11 8.74 -74.06 -0.65 -4.76 16 26 H 0.11 -1.11 7.96 -2.39 -0.02 -1.13 16 27 H -0.29 -0.18 7.11 99.48 0.71 0.52 16 28 H -0.28 0.56 7.11 99.48 0.71 1.27 16 29 H 0.19 -1.24 4.89 -2.91 -0.01 -1.26 16 30 H 0.42 -1.21 8.10 -92.71 -0.75 -1.96 16 31 H 0.13 0.05 6.54 -2.91 -0.02 0.03 16 32 H 0.14 -0.20 8.06 -2.91 -0.02 -0.22 16 33 H 0.14 -0.16 8.06 -2.91 -0.02 -0.18 16 34 H 0.13 0.06 8.06 -2.91 -0.02 0.03 16 35 H 0.12 0.48 6.95 -2.91 -0.02 0.46 16 36 H 0.12 -0.34 7.80 -2.39 -0.02 -0.35 16 37 H 0.11 -0.74 8.13 -2.39 -0.02 -0.76 16 38 H 0.08 0.55 6.71 -2.38 -0.02 0.53 16 39 H 0.11 0.32 6.22 -2.39 -0.01 0.30 16 40 H 0.15 0.42 7.64 -2.92 -0.02 0.39 16 41 H 0.16 -0.60 8.06 -2.91 -0.02 -0.62 16 Total: 0.00 -19.05 346.82 0.94 -18.12 By element: Atomic # 1 Polarization: -7.64 SS G_CDS: -0.26 Total: -7.90 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: 3.81 Total: 5.19 kcal Atomic # 7 Polarization: -1.28 SS G_CDS: -3.48 Total: -4.76 kcal Atomic # 8 Polarization: -5.21 SS G_CDS: -1.96 Total: -7.16 kcal Atomic # 9 Polarization: -1.28 SS G_CDS: 0.78 Total: -0.50 kcal Atomic # 14 Polarization: -5.03 SS G_CDS: 2.05 Total: -2.99 kcal Total: -19.05 0.94 -18.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12905100_13287726.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.228 kcal (2) G-P(sol) polarization free energy of solvation -19.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds