Wall clock time and date at job start Sat Mar 6 2021 20:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.36408 * 125.80451 * 2 1 4 4 C 1.47381 * 127.19053 * 359.97438 * 3 2 1 5 5 O 1.21615 * 120.00128 * 359.43676 * 4 3 2 6 6 N 1.34775 * 119.99971 * 179.70332 * 4 3 2 7 7 C 1.46504 * 119.99953 * 174.72515 * 6 4 3 8 8 C 1.50708 * 112.84764 * 75.94721 * 7 6 4 9 9 C 1.38233 * 119.99716 * 184.92585 * 8 7 6 10 10 C 1.38233 * 119.99577 * 179.76669 * 9 8 7 11 11 C 1.38239 * 119.99939 * 0.48225 * 10 9 8 12 12 C 1.38230 * 120.00078 * 359.79307 * 11 10 9 13 13 C 1.38235 * 120.00190 * 359.95528 * 12 11 10 14 14 C 1.53775 * 113.61690 * 304.75341 * 7 6 4 15 15 C 1.53784 * 87.08052 * 270.88119 * 14 7 6 16 16 H 1.09000 * 113.61829 * 89.19655 * 15 14 7 17 17 F 1.39901 * 113.61505 * 220.01824 * 15 14 7 18 18 C 1.53783 * 113.61590 * 207.24903 * 7 6 4 19 19 C 1.47022 * 105.61893 * 179.71850 * 3 2 1 20 20 C 1.34174 * 105.94947 * 0.25921 * 19 3 2 21 21 C 1.50701 * 125.43406 * 180.02562 * 20 19 3 22 22 O 1.42898 * 109.47235 * 65.00459 * 21 20 19 23 23 Si 1.86308 * 109.46936 * 185.00524 * 21 20 19 24 24 O 1.33660 * 125.79976 * 180.16957 * 2 1 3 25 25 H 1.08996 * 109.46818 * 89.99545 * 1 2 3 26 26 H 1.09001 * 109.46834 * 209.99865 * 1 2 3 27 27 H 1.08997 * 109.46659 * 330.00007 * 1 2 3 28 28 H 0.96999 * 120.00171 * 354.73531 * 6 4 3 29 29 H 1.07995 * 120.00549 * 359.97438 * 9 8 7 30 30 H 1.08004 * 120.00331 * 180.24863 * 10 9 8 31 31 H 1.08003 * 120.00033 * 179.76870 * 11 10 9 32 32 H 1.08007 * 120.00210 * 179.97438 * 12 11 10 33 33 H 1.07997 * 120.00177 * 180.02562 * 13 12 11 34 34 H 1.09000 * 113.61873 * 25.42565 * 14 7 6 35 35 H 1.08998 * 113.61573 * 156.33355 * 14 7 6 36 36 H 1.08998 * 113.61469 * 203.66489 * 18 7 6 37 37 H 1.08997 * 113.61554 * 334.57016 * 18 7 6 38 38 H 1.07995 * 127.02275 * 180.26533 * 19 3 2 39 39 H 1.09003 * 109.47217 * 305.00419 * 21 20 19 40 40 H 0.96706 * 113.99301 * 60.00287 * 22 21 20 41 41 H 1.48500 * 109.99819 * 180.02562 * 23 21 20 42 42 H 1.48497 * 110.00041 * 301.31877 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3051 1.1063 0.0000 4 6 1.8741 2.5157 -0.0005 5 8 0.6891 2.7892 -0.0114 6 7 2.7931 3.5014 0.0056 7 6 2.3692 4.8989 -0.1116 8 6 1.7803 5.4408 1.1655 9 6 1.2388 6.7123 1.1918 10 6 0.6942 7.2075 2.3619 11 6 0.7003 6.4349 3.5082 12 6 1.2470 5.1655 3.4833 13 6 1.7868 4.6683 2.3119 14 6 1.5083 5.1794 -1.3545 15 6 2.8216 5.4594 -2.1040 16 1 3.2600 4.5731 -2.5629 17 9 2.7446 6.5447 -2.9834 18 6 3.4334 5.8150 -0.7386 19 6 3.6850 0.5990 0.0070 20 6 3.5859 -0.7391 0.0046 21 6 4.7459 -1.7011 0.0102 22 8 5.4686 -1.5686 1.2358 23 14 4.1078 -3.4442 -0.1492 24 8 2.2889 -1.0841 -0.0032 25 1 -0.3633 0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3632 0.8900 0.5138 28 1 3.7353 3.2856 0.0874 29 1 1.2380 7.3176 0.2974 30 1 0.2675 8.1994 2.3816 31 1 0.2782 6.8232 4.4234 32 1 1.2521 4.5620 4.3790 33 1 2.2136 3.6764 2.2923 34 1 0.9739 4.3035 -1.7223 35 1 0.8680 6.0556 -1.2534 36 1 3.3193 6.8650 -0.4692 37 1 4.4530 5.4522 -0.6092 38 1 4.5928 1.1839 0.0129 39 1 5.4069 -1.4782 -0.8273 40 1 4.9413 -1.7529 2.0252 41 1 5.2420 -4.4027 -0.1442 42 1 3.1803 -3.7499 0.9695 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_12905100_13308374.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:40:03 Heat of formation + Delta-G solvation = -36.919623 kcal Electronic energy + Delta-G solvation = -28812.993094 eV Core-core repulsion = 24641.922739 eV Total energy + Delta-G solvation = -4171.070356 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 332.126 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -48.54904 -43.81149 -41.86487 -39.68237 -38.48225 -38.22709 -34.66488 -33.85590 -33.12571 -31.88955 -31.67501 -29.49073 -27.19305 -26.54748 -25.55311 -24.29296 -23.48852 -22.62813 -22.24724 -20.80811 -20.27556 -19.07978 -18.58705 -18.02176 -17.71809 -17.33743 -17.02625 -16.74782 -16.60481 -16.08271 -15.99602 -15.87684 -15.68863 -15.52964 -15.14198 -14.71537 -14.34624 -14.27596 -14.16191 -13.99792 -13.97929 -13.91058 -13.82978 -13.60700 -13.29076 -13.02252 -12.90168 -12.55523 -12.30366 -12.13618 -11.93447 -11.73758 -11.49346 -11.08004 -10.90332 -10.76709 -10.26157 -9.79129 -9.64492 -9.57827 -5.05544 0.23923 0.41452 0.52984 0.76734 1.05210 1.36511 1.63397 1.85093 1.93974 2.26431 2.75613 3.03176 3.11402 3.21115 3.27071 3.41118 3.47145 3.69261 3.69652 3.75940 4.00967 4.06933 4.08495 4.15676 4.21017 4.25414 4.35467 4.47029 4.50213 4.50878 4.54637 4.59410 4.62243 4.69302 4.75490 4.87934 4.99600 5.05059 5.08087 5.14946 5.15463 5.35844 5.57619 5.65106 5.72475 5.84130 6.09439 6.13504 6.36924 7.15070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.099 3.901 3 C -0.255 4.255 4 C 0.596 3.404 5 O -0.521 6.521 6 N -0.709 5.709 7 C 0.197 3.803 8 C -0.074 4.074 9 C -0.112 4.112 10 C -0.117 4.117 11 C -0.119 4.119 12 C -0.119 4.119 13 C -0.099 4.099 14 C -0.152 4.152 15 C 0.066 3.934 16 H 0.110 0.890 17 F -0.203 7.203 18 C -0.152 4.152 19 C -0.148 4.148 20 C -0.053 4.053 21 C -0.034 4.034 22 O -0.521 6.521 23 Si 0.701 3.299 24 O -0.168 6.168 25 H 0.094 0.906 26 H 0.081 0.919 27 H 0.111 0.889 28 H 0.405 0.595 29 H 0.123 0.877 30 H 0.124 0.876 31 H 0.122 0.878 32 H 0.121 0.879 33 H 0.115 0.885 34 H 0.095 0.905 35 H 0.107 0.893 36 H 0.113 0.887 37 H 0.089 0.911 38 H 0.158 0.842 39 H 0.138 0.862 40 H 0.381 0.619 41 H -0.248 1.248 42 H -0.256 1.256 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.264 -1.685 -0.376 2.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.045 3.955 3 C -0.260 4.260 4 C 0.384 3.616 5 O -0.398 6.398 6 N -0.361 5.361 7 C 0.110 3.890 8 C -0.076 4.076 9 C -0.130 4.130 10 C -0.135 4.135 11 C -0.137 4.137 12 C -0.137 4.137 13 C -0.117 4.117 14 C -0.190 4.190 15 C 0.030 3.970 16 H 0.128 0.872 17 F -0.183 7.183 18 C -0.190 4.190 19 C -0.168 4.168 20 C -0.101 4.101 21 C -0.144 4.144 22 O -0.328 6.328 23 Si 0.600 3.400 24 O -0.065 6.065 25 H 0.112 0.888 26 H 0.100 0.900 27 H 0.129 0.871 28 H 0.241 0.759 29 H 0.141 0.859 30 H 0.142 0.858 31 H 0.140 0.860 32 H 0.139 0.861 33 H 0.133 0.867 34 H 0.114 0.886 35 H 0.125 0.875 36 H 0.131 0.869 37 H 0.108 0.892 38 H 0.176 0.824 39 H 0.155 0.845 40 H 0.229 0.771 41 H -0.172 1.172 42 H -0.180 1.180 Dipole moment (debyes) X Y Z Total from point charges 0.766 -2.418 -0.465 2.579 hybrid contribution 0.752 0.547 1.203 1.521 sum 1.518 -1.871 0.739 2.520 Atomic orbital electron populations 1.20718 0.83296 1.05445 1.04902 1.22929 0.94075 0.82828 0.95636 1.21074 0.93260 0.93602 1.18024 1.17136 0.85417 0.83455 0.75562 1.90813 1.16252 1.83766 1.48984 1.45438 1.10258 1.04395 1.75998 1.19611 0.96017 0.81039 0.92314 1.19607 0.99591 0.94469 0.93897 1.20908 0.98686 0.94981 0.98428 1.21134 0.99506 1.00022 0.92799 1.21205 0.99453 0.94566 0.98475 1.21155 0.98526 0.96018 0.97989 1.20882 0.99208 0.99263 0.92316 1.24011 0.96738 1.04644 0.93620 1.23130 0.98742 0.87728 0.87414 0.87189 1.92830 1.97023 1.57036 1.71431 1.24018 0.99154 1.01563 0.94305 1.22581 0.96422 0.93515 1.04276 1.22556 0.82903 0.95575 1.09088 1.24359 0.91397 1.07992 0.90628 1.86667 1.39402 1.91520 1.15169 0.94390 0.81380 0.73579 0.90696 1.83696 1.16403 1.35040 1.71333 0.88757 0.90026 0.87075 0.75903 0.85880 0.85769 0.85983 0.86133 0.86671 0.88602 0.87471 0.86886 0.89213 0.82430 0.84457 0.77076 1.17238 1.17957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 0.07 9.88 36.01 0.36 0.42 16 2 C 0.10 0.07 7.37 -34.96 -0.26 -0.18 16 3 C -0.26 -0.19 6.31 -103.28 -0.65 -0.85 16 4 C 0.60 0.84 6.23 -12.54 -0.08 0.76 16 5 O -0.52 -2.12 13.09 5.26 0.07 -2.05 16 6 N -0.71 0.57 4.16 -48.99 -0.20 0.36 16 7 C 0.20 -0.02 0.97 -132.15 -0.13 -0.15 16 8 C -0.07 -0.11 5.06 -104.62 -0.53 -0.64 16 9 C -0.11 -0.13 8.43 -39.59 -0.33 -0.46 16 10 C -0.12 -0.13 10.05 -39.58 -0.40 -0.53 16 11 C -0.12 -0.16 10.05 -39.58 -0.40 -0.56 16 12 C -0.12 -0.21 10.05 -39.59 -0.40 -0.61 16 13 C -0.10 -0.21 9.01 -39.58 -0.36 -0.56 16 14 C -0.15 -0.09 6.59 -25.92 -0.17 -0.26 16 15 C 0.07 -0.02 5.58 -25.91 -0.14 -0.17 16 16 H 0.11 -0.18 8.14 -51.93 -0.42 -0.60 16 17 F -0.20 -0.47 17.41 2.25 0.04 -0.44 16 18 C -0.15 0.24 7.17 -25.91 -0.19 0.05 16 19 C -0.15 0.10 10.49 -37.45 -0.39 -0.29 16 20 C -0.05 0.03 6.18 -35.74 -0.22 -0.20 16 21 C -0.03 0.06 2.97 36.01 0.11 0.17 16 22 O -0.52 0.29 12.88 -35.23 -0.45 -0.16 16 23 Si 0.70 -1.16 32.09 -169.99 -5.46 -6.61 16 24 O -0.17 -0.08 8.90 7.65 0.07 -0.01 16 25 H 0.09 -0.15 8.14 -51.93 -0.42 -0.58 16 26 H 0.08 -0.17 8.14 -51.93 -0.42 -0.60 16 27 H 0.11 0.06 6.50 -51.93 -0.34 -0.27 16 28 H 0.41 -1.22 7.94 -40.82 -0.32 -1.54 16 29 H 0.12 -0.05 6.74 -52.49 -0.35 -0.40 16 30 H 0.12 -0.09 8.06 -52.48 -0.42 -0.51 16 31 H 0.12 -0.05 8.06 -52.48 -0.42 -0.47 16 32 H 0.12 0.03 8.06 -52.48 -0.42 -0.39 16 33 H 0.12 0.21 6.53 -52.49 -0.34 -0.13 16 34 H 0.10 0.20 6.67 -51.93 -0.35 -0.15 16 35 H 0.11 0.07 6.66 -51.93 -0.35 -0.28 16 36 H 0.11 -0.17 7.30 -51.93 -0.38 -0.55 16 37 H 0.09 -0.28 8.13 -51.93 -0.42 -0.70 16 38 H 0.16 -0.42 7.75 -52.49 -0.41 -0.83 16 39 H 0.14 -0.45 7.96 -51.93 -0.41 -0.86 16 40 H 0.38 -1.17 8.70 45.56 0.40 -0.78 16 41 H -0.25 -0.24 7.11 56.52 0.40 0.16 16 42 H -0.26 -0.28 7.11 56.52 0.40 0.12 16 LS Contribution 354.60 15.07 5.34 5.34 Total: 0.00 -7.20 354.60 -9.78 -16.99 By element: Atomic # 1 Polarization: -4.35 SS G_CDS: -5.01 Total: -9.36 kcal Atomic # 6 Polarization: 0.12 SS G_CDS: -4.18 Total: -4.06 kcal Atomic # 7 Polarization: 0.57 SS G_CDS: -0.20 Total: 0.36 kcal Atomic # 8 Polarization: -1.91 SS G_CDS: -0.32 Total: -2.23 kcal Atomic # 9 Polarization: -0.47 SS G_CDS: 0.04 Total: -0.44 kcal Atomic # 14 Polarization: -1.16 SS G_CDS: -5.46 Total: -6.61 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -7.20 -9.78 -16.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12905100_13308374.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.934 kcal (2) G-P(sol) polarization free energy of solvation -7.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds