Wall clock time and date at job start Sat Mar 6 2021 20:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.36408 * 125.80451 * 2 1 4 4 C 1.47381 * 127.19053 * 359.97438 * 3 2 1 5 5 O 1.21615 * 120.00128 * 359.43676 * 4 3 2 6 6 N 1.34775 * 119.99971 * 179.70332 * 4 3 2 7 7 C 1.46504 * 119.99953 * 174.72515 * 6 4 3 8 8 C 1.50708 * 112.84764 * 75.94721 * 7 6 4 9 9 C 1.38233 * 119.99716 * 184.92585 * 8 7 6 10 10 C 1.38233 * 119.99577 * 179.76669 * 9 8 7 11 11 C 1.38239 * 119.99939 * 0.48225 * 10 9 8 12 12 C 1.38230 * 120.00078 * 359.79307 * 11 10 9 13 13 C 1.38235 * 120.00190 * 359.95528 * 12 11 10 14 14 C 1.53775 * 113.61690 * 304.75341 * 7 6 4 15 15 C 1.53784 * 87.08052 * 270.88119 * 14 7 6 16 16 H 1.09000 * 113.61829 * 89.19655 * 15 14 7 17 17 F 1.39901 * 113.61505 * 220.01824 * 15 14 7 18 18 C 1.53783 * 113.61590 * 207.24903 * 7 6 4 19 19 C 1.47022 * 105.61893 * 179.71850 * 3 2 1 20 20 C 1.34174 * 105.94947 * 0.25921 * 19 3 2 21 21 C 1.50701 * 125.43406 * 180.02562 * 20 19 3 22 22 O 1.42898 * 109.47235 * 65.00459 * 21 20 19 23 23 Si 1.86308 * 109.46936 * 185.00524 * 21 20 19 24 24 O 1.33660 * 125.79976 * 180.16957 * 2 1 3 25 25 H 1.08996 * 109.46818 * 89.99545 * 1 2 3 26 26 H 1.09001 * 109.46834 * 209.99865 * 1 2 3 27 27 H 1.08997 * 109.46659 * 330.00007 * 1 2 3 28 28 H 0.96999 * 120.00171 * 354.73531 * 6 4 3 29 29 H 1.07995 * 120.00549 * 359.97438 * 9 8 7 30 30 H 1.08004 * 120.00331 * 180.24863 * 10 9 8 31 31 H 1.08003 * 120.00033 * 179.76870 * 11 10 9 32 32 H 1.08007 * 120.00210 * 179.97438 * 12 11 10 33 33 H 1.07997 * 120.00177 * 180.02562 * 13 12 11 34 34 H 1.09000 * 113.61873 * 25.42565 * 14 7 6 35 35 H 1.08998 * 113.61573 * 156.33355 * 14 7 6 36 36 H 1.08998 * 113.61469 * 203.66489 * 18 7 6 37 37 H 1.08997 * 113.61554 * 334.57016 * 18 7 6 38 38 H 1.07995 * 127.02275 * 180.26533 * 19 3 2 39 39 H 1.09003 * 109.47217 * 305.00419 * 21 20 19 40 40 H 0.96706 * 113.99301 * 60.00287 * 22 21 20 41 41 H 1.48500 * 109.99819 * 180.02562 * 23 21 20 42 42 H 1.48497 * 110.00041 * 301.31877 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3051 1.1063 0.0000 4 6 1.8741 2.5157 -0.0005 5 8 0.6891 2.7892 -0.0114 6 7 2.7931 3.5014 0.0056 7 6 2.3692 4.8989 -0.1116 8 6 1.7803 5.4408 1.1655 9 6 1.2388 6.7123 1.1918 10 6 0.6942 7.2075 2.3619 11 6 0.7003 6.4349 3.5082 12 6 1.2470 5.1655 3.4833 13 6 1.7868 4.6683 2.3119 14 6 1.5083 5.1794 -1.3545 15 6 2.8216 5.4594 -2.1040 16 1 3.2600 4.5731 -2.5629 17 9 2.7446 6.5447 -2.9834 18 6 3.4334 5.8150 -0.7386 19 6 3.6850 0.5990 0.0070 20 6 3.5859 -0.7391 0.0046 21 6 4.7459 -1.7011 0.0102 22 8 5.4686 -1.5686 1.2358 23 14 4.1078 -3.4442 -0.1492 24 8 2.2889 -1.0841 -0.0032 25 1 -0.3633 0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3632 0.8900 0.5138 28 1 3.7353 3.2856 0.0874 29 1 1.2380 7.3176 0.2974 30 1 0.2675 8.1994 2.3816 31 1 0.2782 6.8232 4.4234 32 1 1.2521 4.5620 4.3790 33 1 2.2136 3.6764 2.2923 34 1 0.9739 4.3035 -1.7223 35 1 0.8680 6.0556 -1.2534 36 1 3.3193 6.8650 -0.4692 37 1 4.4530 5.4522 -0.6092 38 1 4.5928 1.1839 0.0129 39 1 5.4069 -1.4782 -0.8273 40 1 4.9413 -1.7529 2.0252 41 1 5.2420 -4.4027 -0.1442 42 1 3.1803 -3.7499 0.9695 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12905100_13308374.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:40:02 Heat of formation + Delta-G solvation = -32.205329 kcal Electronic energy + Delta-G solvation = -28812.788667 eV Core-core repulsion = 24641.922739 eV Total energy + Delta-G solvation = -4170.865929 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 332.126 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -48.63210 -43.78787 -41.89226 -39.75915 -38.51472 -38.14332 -34.71008 -33.83612 -33.07831 -31.93636 -31.73531 -29.42352 -27.16179 -26.54099 -25.51426 -24.29598 -23.53857 -22.64558 -22.23939 -20.81700 -20.28192 -19.02324 -18.62719 -17.99150 -17.69043 -17.33652 -17.02712 -16.76003 -16.63529 -16.03960 -15.97884 -15.91047 -15.73492 -15.58059 -15.18885 -14.75392 -14.37636 -14.25671 -14.17232 -14.03001 -13.96926 -13.90083 -13.81238 -13.53603 -13.33862 -12.94652 -12.84566 -12.57533 -12.32975 -12.18718 -11.98532 -11.74152 -11.48840 -11.10988 -10.92115 -10.73112 -10.28870 -9.87549 -9.65340 -9.60281 -4.95056 0.21665 0.34544 0.44403 0.82152 1.16575 1.40855 1.69216 1.90112 1.96451 2.21511 2.70899 3.15010 3.17632 3.21966 3.37005 3.40799 3.49514 3.72102 3.76116 3.80568 3.99418 4.03897 4.10614 4.15328 4.22958 4.38078 4.46975 4.50522 4.55840 4.56923 4.58582 4.64445 4.65275 4.69757 4.79246 4.83178 4.99104 5.01574 5.11142 5.14651 5.20841 5.34559 5.51174 5.57676 5.66812 5.88029 6.04054 6.32473 6.41767 7.12828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.087 3.913 3 C -0.266 4.266 4 C 0.595 3.405 5 O -0.553 6.553 6 N -0.695 5.695 7 C 0.198 3.802 8 C -0.082 4.082 9 C -0.121 4.121 10 C -0.125 4.125 11 C -0.130 4.130 12 C -0.132 4.132 13 C -0.114 4.114 14 C -0.156 4.156 15 C 0.067 3.933 16 H 0.125 0.875 17 F -0.218 7.218 18 C -0.140 4.140 19 C -0.144 4.144 20 C -0.058 4.058 21 C -0.031 4.031 22 O -0.534 6.534 23 Si 0.766 3.234 24 O -0.174 6.174 25 H 0.101 0.899 26 H 0.094 0.906 27 H 0.096 0.904 28 H 0.418 0.582 29 H 0.135 0.865 30 H 0.141 0.859 31 H 0.137 0.863 32 H 0.130 0.870 33 H 0.113 0.887 34 H 0.078 0.922 35 H 0.103 0.897 36 H 0.114 0.886 37 H 0.112 0.888 38 H 0.180 0.820 39 H 0.159 0.841 40 H 0.390 0.610 41 H -0.283 1.283 42 H -0.296 1.296 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.411 -1.268 -0.666 2.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.033 3.967 3 C -0.271 4.271 4 C 0.384 3.616 5 O -0.433 6.433 6 N -0.348 5.348 7 C 0.111 3.889 8 C -0.083 4.083 9 C -0.139 4.139 10 C -0.143 4.143 11 C -0.148 4.148 12 C -0.150 4.150 13 C -0.132 4.132 14 C -0.194 4.194 15 C 0.031 3.969 16 H 0.143 0.857 17 F -0.199 7.199 18 C -0.178 4.178 19 C -0.164 4.164 20 C -0.106 4.106 21 C -0.140 4.140 22 O -0.342 6.342 23 Si 0.670 3.330 24 O -0.071 6.071 25 H 0.120 0.880 26 H 0.113 0.887 27 H 0.114 0.886 28 H 0.256 0.744 29 H 0.153 0.847 30 H 0.159 0.841 31 H 0.155 0.845 32 H 0.147 0.853 33 H 0.131 0.869 34 H 0.097 0.903 35 H 0.121 0.879 36 H 0.133 0.867 37 H 0.131 0.869 38 H 0.197 0.803 39 H 0.177 0.823 40 H 0.240 0.760 41 H -0.210 1.210 42 H -0.222 1.222 Dipole moment (debyes) X Y Z Total from point charges 1.939 -1.990 -0.762 2.881 hybrid contribution 0.360 0.375 1.347 1.444 sum 2.299 -1.615 0.585 2.870 Atomic orbital electron populations 1.20699 0.82802 1.05283 1.05335 1.23188 0.94668 0.83055 0.95763 1.21151 0.94193 0.93246 1.18498 1.17269 0.85186 0.84014 0.75086 1.90798 1.17631 1.84243 1.50609 1.45311 1.10636 1.03847 1.75015 1.19597 0.96515 0.81448 0.91377 1.19807 0.99585 0.94641 0.94271 1.21133 0.98598 0.95134 0.99022 1.21426 0.99298 1.00810 0.92727 1.21457 0.99495 0.94521 0.99299 1.21378 0.98728 0.96557 0.98380 1.20984 0.99926 0.99391 0.92877 1.23996 0.97226 1.03768 0.94456 1.23278 0.98226 0.87713 0.87709 0.85725 1.92799 1.97077 1.57947 1.72051 1.23976 0.99823 1.01351 0.92675 1.22815 0.96423 0.93547 1.03571 1.22815 0.82739 0.96016 1.09049 1.24475 0.91348 1.07201 0.90995 1.86645 1.40147 1.91500 1.15911 0.93580 0.78147 0.72311 0.88926 1.83692 1.16911 1.35066 1.71433 0.88021 0.88743 0.88577 0.74434 0.84688 0.84139 0.84530 0.85254 0.86907 0.90334 0.87873 0.86724 0.86919 0.80292 0.82329 0.76040 1.20990 1.22236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 0.04 9.88 71.24 0.70 0.74 16 2 C 0.09 0.18 7.37 25.26 0.19 0.36 16 3 C -0.27 -0.45 6.31 -18.99 -0.12 -0.57 16 4 C 0.60 2.04 6.23 86.65 0.54 2.58 16 5 O -0.55 -5.33 13.09 -4.08 -0.05 -5.39 16 6 N -0.70 1.25 4.16 -427.17 -1.78 -0.52 16 7 C 0.20 -0.06 0.97 3.38 0.00 -0.06 16 8 C -0.08 -0.27 5.06 -19.86 -0.10 -0.37 16 9 C -0.12 -0.30 8.43 22.27 0.19 -0.11 16 10 C -0.12 -0.28 10.05 22.27 0.22 -0.06 16 11 C -0.13 -0.37 10.05 22.27 0.22 -0.15 16 12 C -0.13 -0.56 10.05 22.27 0.22 -0.33 16 13 C -0.11 -0.56 9.01 22.27 0.20 -0.36 16 14 C -0.16 -0.28 6.59 31.12 0.21 -0.08 16 15 C 0.07 -0.08 5.58 31.12 0.17 0.09 16 16 H 0.13 -0.53 8.14 -2.39 -0.02 -0.55 16 17 F -0.22 -0.98 17.41 44.97 0.78 -0.19 16 18 C -0.14 0.59 7.17 31.12 0.22 0.81 16 19 C -0.14 0.33 10.49 23.65 0.25 0.58 16 20 C -0.06 0.10 6.18 24.76 0.15 0.25 16 21 C -0.03 0.13 2.97 71.24 0.21 0.35 16 22 O -0.53 1.05 12.88 -148.98 -1.92 -0.87 16 23 Si 0.77 -2.37 32.09 68.60 2.20 -0.17 16 24 O -0.17 -0.18 8.90 4.45 0.04 -0.14 16 25 H 0.10 -0.24 8.14 -2.39 -0.02 -0.26 16 26 H 0.09 -0.34 8.14 -2.39 -0.02 -0.36 16 27 H 0.10 0.28 6.50 -2.39 -0.02 0.27 16 28 H 0.42 -2.98 7.94 -92.71 -0.74 -3.72 16 29 H 0.14 -0.10 6.74 -2.91 -0.02 -0.12 16 30 H 0.14 -0.26 8.06 -2.91 -0.02 -0.28 16 31 H 0.14 -0.13 8.06 -2.91 -0.02 -0.15 16 32 H 0.13 0.16 8.06 -2.91 -0.02 0.14 16 33 H 0.11 0.51 6.53 -2.91 -0.02 0.49 16 34 H 0.08 0.43 6.67 -2.39 -0.02 0.42 16 35 H 0.10 0.23 6.66 -2.39 -0.02 0.21 16 36 H 0.11 -0.46 7.30 -2.39 -0.02 -0.48 16 37 H 0.11 -0.96 8.13 -2.39 -0.02 -0.98 16 38 H 0.18 -1.32 7.75 -2.91 -0.02 -1.34 16 39 H 0.16 -1.36 7.96 -2.39 -0.02 -1.37 16 40 H 0.39 -2.52 8.70 -74.05 -0.64 -3.17 16 41 H -0.28 -0.77 7.11 99.48 0.71 -0.06 16 42 H -0.30 -1.04 7.11 99.48 0.71 -0.33 16 Total: 0.00 -17.76 354.60 2.50 -15.26 By element: Atomic # 1 Polarization: -11.39 SS G_CDS: -0.26 Total: -11.65 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: 3.49 Total: 3.67 kcal Atomic # 7 Polarization: 1.25 SS G_CDS: -1.78 Total: -0.52 kcal Atomic # 8 Polarization: -4.45 SS G_CDS: -1.93 Total: -6.39 kcal Atomic # 9 Polarization: -0.98 SS G_CDS: 0.78 Total: -0.19 kcal Atomic # 14 Polarization: -2.37 SS G_CDS: 2.20 Total: -0.17 kcal Total: -17.76 2.50 -15.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12905100_13308374.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.950 kcal (2) G-P(sol) polarization free energy of solvation -17.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds