Wall clock time and date at job start Sat Mar 6 2021 20:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46895 * 110.99920 * 2 1 4 4 C 1.39044 * 111.00009 * 236.04710 * 2 1 3 5 5 C 1.39200 * 119.93092 * 239.72930 * 4 2 1 6 6 C 1.50693 * 119.96465 * 359.97410 * 5 4 2 7 7 O 1.42906 * 109.47396 * 75.00460 * 6 5 4 8 8 Si 1.86307 * 109.47246 * 195.00243 * 6 5 4 9 9 C 1.37631 * 120.06598 * 179.72210 * 5 4 2 10 10 C 1.39773 * 119.93332 * 0.54954 * 9 5 4 11 11 C 1.47520 * 120.07179 * 179.74651 * 10 9 5 12 12 O 1.21597 * 120.00015 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00006 * 179.97438 * 11 10 9 14 14 C 1.46503 * 119.99607 * 175.34480 * 13 11 10 15 15 C 1.50696 * 112.85237 * 294.40333 * 14 13 11 16 16 C 1.38237 * 120.00165 * 161.77658 * 15 14 13 17 17 C 1.38232 * 120.00033 * 179.76195 * 16 15 14 18 18 C 1.38234 * 120.00009 * 0.51613 * 17 16 15 19 19 C 1.38241 * 119.99987 * 359.74057 * 18 17 16 20 20 C 1.38230 * 119.99984 * 359.97438 * 19 18 17 21 21 C 1.53783 * 113.60983 * 163.20512 * 14 13 11 22 22 C 1.54045 * 86.98887 * 270.83852 * 21 14 13 23 23 H 1.09004 * 113.61547 * 89.11490 * 22 21 14 24 24 F 1.39901 * 113.69909 * 220.01117 * 22 21 14 25 25 C 1.53783 * 87.07959 * 334.57150 * 22 21 14 26 26 C 1.39814 * 119.86408 * 359.71810 * 10 9 5 27 27 C 1.37601 * 119.92697 * 0.02562 * 26 10 9 28 28 H 1.08999 * 109.46596 * 183.95430 * 1 2 3 29 29 H 1.08997 * 109.47020 * 63.95384 * 1 2 3 30 30 H 1.08999 * 109.46862 * 303.95254 * 1 2 3 31 31 H 1.08996 * 109.47280 * 60.00209 * 3 2 1 32 32 H 1.09005 * 109.47063 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.47313 * 299.99708 * 3 2 1 34 34 H 1.08996 * 109.47579 * 315.00186 * 6 5 4 35 35 H 0.96696 * 113.99956 * 59.99168 * 7 6 5 36 36 H 1.48497 * 109.99823 * 58.68124 * 8 6 5 37 37 H 1.48499 * 110.00037 * 180.02562 * 8 6 5 38 38 H 1.08007 * 120.03326 * 180.27229 * 9 5 4 39 39 H 0.96994 * 120.00083 * 355.34829 * 13 11 10 40 40 H 1.08002 * 119.99538 * 0.02562 * 16 15 14 41 41 H 1.08003 * 120.00139 * 180.22775 * 17 16 15 42 42 H 1.07997 * 120.00618 * 179.72208 * 18 17 16 43 43 H 1.08000 * 120.00285 * 179.97438 * 19 18 17 44 44 H 1.07999 * 120.00396 * 179.97438 * 20 19 18 45 45 H 1.08997 * 113.61809 * 25.43592 * 21 14 13 46 46 H 1.09001 * 113.61074 * 156.33169 * 21 14 13 47 47 H 1.09004 * 113.61190 * 270.88351 * 25 22 21 48 48 H 1.08993 * 113.61803 * 139.97714 * 25 22 21 49 49 H 1.08000 * 120.04001 * 180.02562 * 26 10 9 50 50 H 1.08000 * 119.96339 * 180.02562 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9674 -0.7250 -1.0768 5 6 2.7840 -1.8297 -0.8520 6 6 3.1271 -2.2376 0.5576 7 8 1.9959 -2.8707 1.1590 8 14 4.5613 -3.4264 0.5283 9 6 3.2741 -2.5527 -1.9156 10 6 2.9605 -2.1700 -3.2228 11 6 3.4887 -2.9394 -4.3652 12 8 4.1981 -3.9075 -4.1702 13 7 3.1849 -2.5694 -5.6251 14 6 3.7905 -3.2699 -6.7603 15 6 5.2820 -3.0707 -6.8429 16 6 6.0542 -3.9350 -7.5962 17 6 7.4216 -3.7494 -7.6759 18 6 8.0184 -2.7057 -6.9936 19 6 7.2469 -1.8445 -6.2359 20 6 5.8787 -2.0266 -6.1610 21 6 3.0620 -3.0281 -8.0929 22 6 2.1856 -4.2451 -7.7411 23 1 1.2962 -3.9907 -7.1645 24 9 1.9058 -5.0715 -8.8348 25 6 3.3580 -4.7409 -6.8783 26 6 2.1445 -1.0566 -3.4454 27 6 1.6533 -0.3410 -2.3778 28 1 -0.3632 -1.0252 0.0709 29 1 -0.3633 0.4512 -0.9233 30 1 -0.3633 0.5740 0.8525 31 1 1.6460 1.8947 0.8900 32 1 3.0851 1.3423 -0.0005 33 1 1.6460 1.8947 -0.8900 34 1 3.3991 -1.3544 1.1355 35 1 1.6980 -3.6658 0.6963 36 1 5.7345 -2.7908 -0.1234 37 1 4.9091 -3.8368 1.9125 38 1 3.9041 -3.4123 -1.7404 39 1 2.5654 -1.8393 -5.7801 40 1 5.5884 -4.7529 -8.1260 41 1 8.0245 -4.4225 -8.2675 42 1 9.0873 -2.5632 -7.0521 43 1 7.7131 -1.0293 -5.7025 44 1 5.2759 -1.3540 -5.5687 45 1 2.5125 -2.0874 -8.1258 46 1 3.6919 -3.1823 -8.9690 47 1 4.0687 -5.3626 -7.4230 48 1 3.0473 -5.1820 -5.9313 49 1 1.9001 -0.7586 -4.4543 50 1 1.0227 0.5189 -2.5491 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12905100_13422196.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:40:16 Heat of formation + Delta-G solvation = -0.100307 kcal Electronic energy + Delta-G solvation = -34500.208863 eV Core-core repulsion = 29989.152396 eV Total energy + Delta-G solvation = -4511.056467 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 371.168 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -48.59368 -42.14148 -41.24776 -39.78052 -38.58437 -37.81058 -37.16458 -34.56361 -32.71071 -31.96941 -31.77386 -31.13712 -28.55403 -27.16625 -26.91357 -26.68807 -25.44357 -23.67183 -23.35127 -22.84119 -22.46990 -21.38258 -20.36982 -19.16242 -18.57826 -17.85714 -17.64186 -17.33582 -17.18388 -16.67296 -16.50414 -16.32504 -16.15844 -15.96817 -15.78123 -15.67566 -15.54565 -15.45810 -15.09362 -14.88646 -14.72018 -14.38416 -14.24075 -14.03467 -13.98724 -13.89643 -13.52314 -13.50114 -13.31534 -13.10002 -12.98480 -12.66934 -12.61888 -12.53857 -12.28715 -12.26638 -12.05644 -11.95315 -11.67444 -11.43287 -11.04733 -10.41158 -10.32703 -10.10351 -9.86984 -9.81119 -9.62578 -9.50267 -5.05666 -0.38089 0.15811 0.35576 0.45125 1.25286 1.53855 1.66515 1.86879 1.87410 2.63337 2.72520 2.79173 3.17577 3.25314 3.42861 3.46896 3.53227 3.62932 3.67545 3.80611 3.84118 3.99480 4.04151 4.04722 4.14730 4.17242 4.22078 4.24462 4.35242 4.44264 4.49009 4.51424 4.57326 4.58841 4.61478 4.65670 4.67555 4.70494 4.78137 4.87904 4.92259 4.99221 5.00408 5.01794 5.04217 5.11950 5.14049 5.26548 5.34268 5.51518 5.55482 5.58529 5.66486 5.84344 6.04878 6.28950 6.40531 6.81031 7.11788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.525 5.525 3 C 0.025 3.975 4 C 0.137 3.863 5 C -0.117 4.117 6 C -0.035 4.035 7 O -0.541 6.541 8 Si 0.732 3.268 9 C -0.057 4.057 10 C -0.146 4.146 11 C 0.564 3.436 12 O -0.553 6.553 13 N -0.696 5.696 14 C 0.197 3.803 15 C -0.079 4.079 16 C -0.122 4.122 17 C -0.126 4.126 18 C -0.131 4.131 19 C -0.133 4.133 20 C -0.116 4.116 21 C -0.139 4.139 22 C 0.066 3.934 23 H 0.130 0.870 24 F -0.219 7.219 25 C -0.162 4.162 26 C -0.056 4.056 27 C -0.157 4.157 28 H 0.067 0.933 29 H 0.043 0.957 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.062 0.938 33 H 0.044 0.956 34 H 0.106 0.894 35 H 0.389 0.611 36 H -0.296 1.296 37 H -0.290 1.290 38 H 0.139 0.861 39 H 0.419 0.581 40 H 0.134 0.866 41 H 0.139 0.861 42 H 0.135 0.865 43 H 0.130 0.870 44 H 0.121 0.879 45 H 0.117 0.883 46 H 0.111 0.889 47 H 0.103 0.897 48 H 0.078 0.922 49 H 0.162 0.838 50 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.321 4.622 -3.468 7.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.246 5.246 3 C -0.121 4.121 4 C 0.043 3.957 5 C -0.118 4.118 6 C -0.147 4.147 7 O -0.348 6.348 8 Si 0.640 3.360 9 C -0.076 4.076 10 C -0.149 4.149 11 C 0.353 3.647 12 O -0.431 6.431 13 N -0.350 5.350 14 C 0.110 3.890 15 C -0.080 4.080 16 C -0.140 4.140 17 C -0.144 4.144 18 C -0.149 4.149 19 C -0.151 4.151 20 C -0.134 4.134 21 C -0.176 4.176 22 C 0.030 3.970 23 H 0.148 0.852 24 F -0.200 7.200 25 C -0.200 4.200 26 C -0.075 4.075 27 C -0.177 4.177 28 H 0.086 0.914 29 H 0.061 0.939 30 H 0.097 0.903 31 H 0.100 0.900 32 H 0.081 0.919 33 H 0.063 0.937 34 H 0.124 0.876 35 H 0.238 0.762 36 H -0.223 1.223 37 H -0.217 1.217 38 H 0.156 0.844 39 H 0.259 0.741 40 H 0.152 0.848 41 H 0.156 0.844 42 H 0.153 0.847 43 H 0.148 0.852 44 H 0.139 0.861 45 H 0.135 0.865 46 H 0.129 0.871 47 H 0.121 0.879 48 H 0.097 0.903 49 H 0.179 0.821 50 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -2.811 4.055 -2.235 5.417 hybrid contribution -0.245 1.106 -0.436 1.214 sum -3.056 5.162 -2.672 6.566 Atomic orbital electron populations 1.22435 0.84252 1.02910 1.01699 1.59365 1.09801 1.14650 1.40810 1.22511 1.00492 0.86770 1.02294 1.18980 0.94070 0.93070 0.89609 1.20226 0.99516 0.96344 0.95729 1.24652 0.97183 1.01686 0.91188 1.86523 1.48098 1.45507 1.54649 0.94278 0.76190 0.85978 0.79600 1.21056 0.97005 0.98253 0.91242 1.19813 1.03392 0.98962 0.92741 1.18289 0.79682 0.83553 0.83186 1.90831 1.38380 1.28231 1.85625 1.45435 1.47969 1.37945 1.03616 1.19595 0.88904 0.93391 0.87107 1.19746 0.94405 0.95837 0.97991 1.21185 0.94157 0.99133 0.99532 1.21415 0.95023 0.98277 0.99672 1.21449 1.00825 0.95398 0.97258 1.21386 0.94180 1.00094 0.99395 1.21033 0.95099 0.98099 0.99210 1.23993 0.97883 1.00049 0.95724 1.23364 0.98585 0.90029 0.84978 0.85212 1.92799 1.95441 1.74516 1.57250 1.24072 0.98133 0.96464 1.01371 1.21457 0.93326 0.92044 1.00654 1.21851 1.01952 1.01609 0.92239 0.91420 0.93859 0.90318 0.89962 0.91891 0.93701 0.87620 0.76235 1.22310 1.21691 0.84381 0.74080 0.84807 0.84364 0.84722 0.85218 0.86095 0.86496 0.87111 0.87893 0.90282 0.82052 0.83428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.09 9.34 127.69 1.19 1.10 16 2 N -0.53 0.09 4.20 -745.10 -3.13 -3.04 16 3 C 0.03 -0.07 9.32 127.69 1.19 1.12 16 4 C 0.14 -0.05 4.69 38.47 0.18 0.13 16 5 C -0.12 -0.14 5.27 -19.78 -0.10 -0.24 16 6 C -0.04 -0.08 2.33 71.23 0.17 0.08 16 7 O -0.54 -1.18 12.88 -148.98 -1.92 -3.10 16 8 Si 0.73 2.32 29.92 68.60 2.05 4.37 16 9 C -0.06 -0.08 8.19 22.50 0.18 0.11 16 10 C -0.15 0.15 5.88 -20.08 -0.12 0.04 16 11 C 0.56 0.74 6.34 86.69 0.55 1.29 16 12 O -0.55 -5.22 14.89 -4.02 -0.06 -5.28 16 13 N -0.70 3.34 4.23 -427.05 -1.80 1.53 16 14 C 0.20 -0.43 0.92 3.38 0.00 -0.42 16 15 C -0.08 -0.19 4.68 -19.86 -0.09 -0.28 16 16 C -0.12 -0.32 8.97 22.27 0.20 -0.12 16 17 C -0.13 -0.33 10.05 22.27 0.22 -0.11 16 18 C -0.13 -0.40 10.05 22.27 0.22 -0.18 16 19 C -0.13 -0.49 10.05 22.27 0.22 -0.27 16 20 C -0.12 -0.40 8.93 22.27 0.20 -0.20 16 21 C -0.14 0.85 7.22 31.21 0.23 1.08 16 22 C 0.07 -0.22 5.58 31.21 0.17 -0.05 16 23 H 0.13 -0.96 8.14 -2.38 -0.02 -0.98 16 24 F -0.22 -0.68 17.41 44.97 0.78 0.10 16 25 C -0.16 0.00 6.65 31.12 0.21 0.21 16 26 C -0.06 0.36 9.52 22.50 0.21 0.58 16 27 C -0.16 0.75 8.57 22.36 0.19 0.94 16 28 H 0.07 -0.08 8.14 -2.39 -0.02 -0.10 16 29 H 0.04 -0.24 7.10 -2.39 -0.02 -0.26 16 30 H 0.08 -0.27 8.14 -2.39 -0.02 -0.29 16 31 H 0.08 -0.31 8.14 -2.39 -0.02 -0.33 16 32 H 0.06 -0.09 8.12 -2.38 -0.02 -0.11 16 33 H 0.04 -0.24 7.45 -2.39 -0.02 -0.26 16 34 H 0.11 0.51 7.78 -2.39 -0.02 0.50 16 35 H 0.39 -2.11 8.70 -74.06 -0.64 -2.76 16 36 H -0.30 -2.83 7.11 99.48 0.71 -2.12 16 37 H -0.29 -2.75 7.11 99.48 0.71 -2.04 16 38 H 0.14 0.27 4.71 -2.91 -0.01 0.26 16 39 H 0.42 -4.97 6.69 -92.71 -0.62 -5.59 16 40 H 0.13 -0.03 6.26 -2.91 -0.02 -0.05 16 41 H 0.14 -0.17 8.06 -2.91 -0.02 -0.19 16 42 H 0.13 -0.07 8.06 -2.91 -0.02 -0.09 16 43 H 0.13 0.10 8.06 -2.91 -0.02 0.07 16 44 H 0.12 0.16 6.91 -2.91 -0.02 0.14 16 45 H 0.12 -1.33 8.09 -2.39 -0.02 -1.35 16 46 H 0.11 -0.56 7.95 -2.39 -0.02 -0.57 16 47 H 0.10 0.07 6.00 -2.39 -0.01 0.06 16 48 H 0.08 0.26 7.23 -2.39 -0.02 0.24 16 49 H 0.16 -2.24 6.40 -2.91 -0.02 -2.26 16 50 H 0.15 -1.24 7.01 -2.91 -0.02 -1.26 16 Total: 0.00 -20.89 403.41 0.92 -19.96 By element: Atomic # 1 Polarization: -19.11 SS G_CDS: -0.23 Total: -19.34 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: 5.23 Total: 4.79 kcal Atomic # 7 Polarization: 3.42 SS G_CDS: -4.93 Total: -1.51 kcal Atomic # 8 Polarization: -6.40 SS G_CDS: -1.98 Total: -8.38 kcal Atomic # 9 Polarization: -0.68 SS G_CDS: 0.78 Total: 0.10 kcal Atomic # 14 Polarization: 2.32 SS G_CDS: 2.05 Total: 4.37 kcal Total: -20.89 0.92 -19.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12905100_13422196.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.864 kcal (2) G-P(sol) polarization free energy of solvation -20.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds