Wall clock time and date at job start Sat Mar 6 2021 20:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42907 * 1 3 3 Si 1.86300 * 109.47285 * 2 1 4 4 C 1.50703 * 109.46830 * 240.00118 * 2 1 3 5 5 C 1.32699 * 124.68242 * 300.28154 * 4 2 1 6 6 C 1.44503 * 113.09567 * 180.15312 * 5 4 2 7 7 C 1.47043 * 123.49160 * 179.83527 * 6 5 4 8 8 O 1.21654 * 120.00171 * 179.72881 * 7 6 5 9 9 N 1.34777 * 119.99743 * 359.45080 * 7 6 5 10 10 C 1.46503 * 119.99613 * 175.29574 * 9 7 6 11 11 C 1.50693 * 112.85593 * 65.09222 * 10 9 7 12 12 C 1.38231 * 120.00639 * 197.58811 * 11 10 9 13 13 C 1.38236 * 120.00347 * 179.74200 * 12 11 10 14 14 C 1.38236 * 119.99423 * 0.55092 * 13 12 11 15 15 C 1.38222 * 120.00700 * 359.70063 * 14 13 12 16 16 C 1.38238 * 119.99784 * 17.85372 * 11 10 9 17 17 C 1.53781 * 113.61332 * 293.89333 * 10 9 7 18 18 C 1.53781 * 87.08458 * 270.88686 * 17 10 9 19 19 H 1.08998 * 113.61768 * 89.11370 * 18 17 10 20 20 F 1.39898 * 113.61827 * 220.02273 * 18 17 10 21 21 C 1.53784 * 113.61072 * 196.28824 * 10 9 7 22 22 C 1.36226 * 113.01833 * 359.56489 * 6 5 4 23 23 Cl 1.73597 * 124.60880 * 180.20950 * 22 6 5 24 24 S 1.70446 * 110.78704 * 0.23303 * 22 6 5 25 25 H 0.96705 * 113.99812 * 59.99299 * 1 2 3 26 26 H 1.08992 * 109.46788 * 119.99993 * 2 1 3 27 27 H 1.48497 * 110.00069 * 298.68071 * 3 2 1 28 28 H 1.48503 * 110.00003 * 59.99897 * 3 2 1 29 29 H 1.08000 * 123.45304 * 359.94552 * 5 4 2 30 30 H 0.96992 * 120.00139 * 355.29507 * 9 7 6 31 31 H 1.08007 * 119.99744 * 359.97438 * 12 11 10 32 32 H 1.07999 * 119.99852 * 180.27032 * 13 12 11 33 33 H 1.08005 * 119.99581 * 179.72257 * 14 13 12 34 34 H 1.07998 * 120.00461 * 180.02562 * 15 14 13 35 35 H 1.08002 * 119.99870 * 0.02562 * 16 11 10 36 36 H 1.08996 * 113.61564 * 25.43770 * 17 10 9 37 37 H 1.09003 * 113.61311 * 156.33992 * 17 10 9 38 38 H 1.09005 * 113.61305 * 203.66180 * 21 10 9 39 39 H 1.08996 * 113.61323 * 334.56510 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 1.6642 -1.9741 -1.5348 6 6 2.2769 -2.4010 -2.7719 7 6 2.1337 -3.7568 -3.3227 8 8 2.6739 -4.0467 -4.3735 9 7 1.4086 -4.6801 -2.6606 10 6 1.1798 -5.9981 -3.2579 11 6 2.4479 -6.7964 -3.4176 12 6 2.4789 -7.8806 -4.2745 13 6 3.6437 -8.6097 -4.4250 14 6 4.7743 -8.2612 -3.7100 15 6 4.7420 -7.1802 -2.8492 16 6 3.5788 -6.4477 -2.7031 17 6 0.3138 -5.9568 -4.5281 18 6 -0.9076 -6.1040 -3.6054 19 1 -1.3080 -5.1524 -3.2558 20 9 -1.8939 -6.9564 -4.1129 21 6 0.0362 -6.7844 -2.5956 22 6 2.9961 -1.4155 -3.3780 23 17 3.8500 -1.5985 -4.8783 24 16 2.9440 0.0215 -2.4628 25 1 -0.3933 0.4418 -0.7650 26 1 1.7923 -0.5138 0.8899 27 1 1.5881 2.4585 -1.2242 28 1 1.5616 2.4679 1.2085 29 1 1.0544 -2.6186 -0.9190 30 1 1.0383 -4.4719 -1.7887 31 1 1.5941 -8.1560 -4.8292 32 1 3.6691 -9.4541 -5.0977 33 1 5.6831 -8.8336 -3.8242 34 1 5.6254 -6.9078 -2.2909 35 1 3.5533 -5.6034 -2.0301 36 1 0.3526 -5.0019 -5.0521 37 1 0.4671 -6.8100 -5.1889 38 1 0.1137 -7.8635 -2.7291 39 1 -0.1489 -6.4972 -1.5606 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12905100_13431040.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:40:24 Heat of formation + Delta-G solvation = -13.542746 kcal Electronic energy + Delta-G solvation = -28589.601184 eV Core-core repulsion = 24339.353031 eV Total energy + Delta-G solvation = -4250.248153 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 368.044 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -48.62942 -42.01028 -40.18927 -39.01472 -38.50933 -37.91900 -36.99742 -34.29141 -31.98597 -31.76854 -31.56180 -27.25020 -27.03030 -26.59602 -25.09134 -23.51705 -22.60542 -22.21590 -20.93522 -20.32624 -19.43277 -18.58623 -17.94712 -17.89618 -17.34591 -16.83153 -16.64813 -16.47082 -16.07846 -15.99169 -15.84371 -15.74548 -15.62242 -15.13579 -14.72259 -14.46552 -14.40905 -14.32693 -13.95315 -13.93926 -13.84969 -13.51632 -13.35874 -12.93214 -12.61832 -12.58996 -12.48706 -12.28486 -12.11990 -11.93197 -11.80846 -11.68772 -11.44295 -10.99492 -10.73665 -10.31139 -9.88477 -9.84213 -9.69098 -9.58710 -5.05492 -0.62485 -0.18584 0.38044 0.47770 0.48771 0.72334 1.04872 1.19228 1.53107 1.89993 1.96453 2.16181 2.73928 3.14874 3.22318 3.24191 3.42636 3.46783 3.54388 3.78180 3.82081 3.88796 4.01493 4.06115 4.16154 4.22992 4.41105 4.49835 4.54642 4.57475 4.60171 4.65504 4.70351 4.79744 4.81456 4.97227 5.00827 5.04309 5.13756 5.34395 5.53368 5.60218 5.68017 6.07077 6.40452 6.41748 7.13587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.534 6.534 2 C -0.025 4.025 3 Si 0.700 3.300 4 C -0.225 4.225 5 C -0.068 4.068 6 C -0.165 4.165 7 C 0.575 3.425 8 O -0.537 6.537 9 N -0.694 5.694 10 C 0.200 3.800 11 C -0.076 4.076 12 C -0.124 4.124 13 C -0.128 4.128 14 C -0.131 4.131 15 C -0.132 4.132 16 C -0.110 4.110 17 C -0.162 4.162 18 C 0.067 3.933 19 H 0.129 0.871 20 F -0.219 7.219 21 C -0.138 4.138 22 C -0.138 4.138 23 Cl 0.002 6.998 24 S 0.260 5.740 25 H 0.390 0.610 26 H 0.151 0.849 27 H -0.260 1.260 28 H -0.270 1.270 29 H 0.183 0.817 30 H 0.419 0.581 31 H 0.132 0.868 32 H 0.137 0.863 33 H 0.135 0.865 34 H 0.131 0.869 35 H 0.118 0.882 36 H 0.072 0.928 37 H 0.103 0.897 38 H 0.111 0.889 39 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.163 2.175 6.038 6.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.342 6.342 2 C -0.138 4.138 3 Si 0.603 3.397 4 C -0.342 4.342 5 C -0.096 4.096 6 C -0.185 4.185 7 C 0.361 3.639 8 O -0.414 6.414 9 N -0.348 5.348 10 C 0.113 3.887 11 C -0.077 4.077 12 C -0.142 4.142 13 C -0.145 4.145 14 C -0.149 4.149 15 C -0.150 4.150 16 C -0.128 4.128 17 C -0.200 4.200 18 C 0.031 3.969 19 H 0.147 0.853 20 F -0.200 7.200 21 C -0.176 4.176 22 C -0.285 4.285 23 Cl 0.031 6.969 24 S 0.525 5.475 25 H 0.240 0.760 26 H 0.169 0.831 27 H -0.186 1.186 28 H -0.195 1.195 29 H 0.200 0.800 30 H 0.258 0.742 31 H 0.150 0.850 32 H 0.155 0.845 33 H 0.153 0.847 34 H 0.149 0.851 35 H 0.136 0.864 36 H 0.091 0.909 37 H 0.121 0.879 38 H 0.130 0.870 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 1.081 3.925 5.485 6.831 hybrid contribution -1.457 -1.439 -0.630 2.142 sum -0.377 2.487 4.855 5.468 Atomic orbital electron populations 1.86627 1.17301 1.80042 1.50256 1.24443 0.83612 1.09599 0.96155 0.94582 0.90789 0.74233 0.80140 1.24865 1.07263 0.99160 1.02917 1.21147 0.99262 0.95437 0.93782 1.20297 1.05062 0.94631 0.98463 1.17603 0.78313 0.83924 0.84045 1.90909 1.46375 1.80427 1.23645 1.45368 1.54837 1.11678 1.22895 1.19572 0.91262 0.82707 0.95198 1.19697 0.94805 0.95814 0.97382 1.21155 0.99011 0.95607 0.98455 1.21394 0.93000 1.00358 0.99790 1.21433 0.99149 0.97595 0.96759 1.21379 0.98400 0.95954 0.99224 1.20982 0.92854 0.99317 0.99620 1.24067 0.94364 1.04290 0.97325 1.23348 0.84474 0.93698 0.95346 0.85302 1.92798 1.65302 1.73214 1.88643 1.23993 0.90996 1.01563 1.01030 1.25807 1.03719 1.02422 0.96559 1.98433 1.73905 1.97248 1.27337 1.83349 1.46189 1.07089 1.10833 0.76038 0.83141 1.18560 1.19475 0.80029 0.74189 0.85036 0.84491 0.84695 0.85099 0.86354 0.90908 0.87853 0.87032 0.86500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 2.93 12.85 -148.98 -1.91 1.02 16 2 C -0.03 0.20 2.95 71.24 0.21 0.41 16 3 Si 0.70 -4.48 30.91 68.60 2.12 -2.36 16 4 C -0.22 1.42 5.68 24.52 0.14 1.56 16 5 C -0.07 0.41 9.71 22.70 0.22 0.63 16 6 C -0.16 -0.06 5.98 -19.84 -0.12 -0.18 16 7 C 0.58 1.89 6.36 86.55 0.55 2.44 16 8 O -0.54 -6.04 13.40 -4.20 -0.06 -6.09 16 9 N -0.69 2.06 4.27 -427.50 -1.83 0.23 16 10 C 0.20 -0.14 0.92 3.38 0.00 -0.14 16 11 C -0.08 -0.28 4.51 -19.87 -0.09 -0.37 16 12 C -0.12 -0.49 8.94 22.27 0.20 -0.29 16 13 C -0.13 -0.48 10.05 22.27 0.22 -0.26 16 14 C -0.13 -0.52 10.05 22.27 0.22 -0.30 16 15 C -0.13 -0.61 10.05 22.27 0.22 -0.38 16 16 C -0.11 -0.52 8.64 22.27 0.19 -0.33 16 17 C -0.16 -0.24 6.72 31.12 0.21 -0.03 16 18 C 0.07 -0.13 5.58 31.22 0.17 0.05 16 19 H 0.13 -0.75 8.14 -2.39 -0.02 -0.76 16 20 F -0.22 -0.93 17.41 44.97 0.78 -0.15 16 21 C -0.14 0.66 7.21 31.22 0.23 0.89 16 22 C -0.14 -0.33 6.87 67.35 0.46 0.14 16 23 Cl 0.00 0.01 27.20 -2.72 -0.07 -0.06 16 24 S 0.26 -0.92 20.17 -56.49 -1.14 -2.06 16 25 H 0.39 -4.00 8.70 -74.05 -0.64 -4.65 16 26 H 0.15 -1.68 7.96 -2.39 -0.02 -1.70 16 27 H -0.26 0.63 7.11 99.48 0.71 1.34 16 28 H -0.27 -0.12 7.11 99.48 0.71 0.59 16 29 H 0.18 -2.09 7.11 -2.91 -0.02 -2.11 16 30 H 0.42 -4.06 7.22 -92.71 -0.67 -4.73 16 31 H 0.13 0.15 6.29 -2.91 -0.02 0.13 16 32 H 0.14 -0.01 8.06 -2.91 -0.02 -0.03 16 33 H 0.14 0.03 8.06 -2.91 -0.02 0.00 16 34 H 0.13 0.18 8.06 -2.91 -0.02 0.15 16 35 H 0.12 0.36 6.89 -2.91 -0.02 0.34 16 36 H 0.07 0.37 7.57 -2.39 -0.02 0.35 16 37 H 0.10 0.23 6.02 -2.39 -0.01 0.21 16 38 H 0.11 -0.43 7.93 -2.38 -0.02 -0.45 16 39 H 0.12 -1.15 8.09 -2.39 -0.02 -1.17 16 Total: 0.00 -18.92 356.74 0.81 -18.11 By element: Atomic # 1 Polarization: -12.34 SS G_CDS: -0.14 Total: -12.48 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: 3.05 Total: 3.83 kcal Atomic # 7 Polarization: 2.06 SS G_CDS: -1.83 Total: 0.23 kcal Atomic # 8 Polarization: -3.10 SS G_CDS: -1.97 Total: -5.07 kcal Atomic # 9 Polarization: -0.93 SS G_CDS: 0.78 Total: -0.15 kcal Atomic # 14 Polarization: -4.48 SS G_CDS: 2.12 Total: -2.36 kcal Atomic # 16 Polarization: -0.92 SS G_CDS: -1.14 Total: -2.06 kcal Atomic # 17 Polarization: 0.01 SS G_CDS: -0.07 Total: -0.06 kcal Total: -18.92 0.81 -18.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12905100_13431040.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.568 kcal (2) G-P(sol) polarization free energy of solvation -18.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds