Wall clock time and date at job start Sat Mar 6 2021 20:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86298 * 109.47321 * 2 1 4 4 C 1.50708 * 109.47158 * 239.99941 * 2 1 3 5 5 C 1.34173 * 125.43856 * 299.72376 * 4 2 1 6 6 C 1.47027 * 105.95196 * 179.86442 * 5 4 2 7 7 C 1.47376 * 127.18919 * 180.14700 * 6 5 4 8 8 O 1.21615 * 120.00439 * 0.26508 * 7 6 5 9 9 N 1.34777 * 119.99897 * 180.26385 * 7 6 5 10 10 C 1.46503 * 120.00223 * 175.26463 * 9 7 6 11 11 C 1.50704 * 112.84748 * 72.65353 * 10 9 7 12 12 C 1.38236 * 119.99548 * 192.96359 * 11 10 9 13 13 C 1.38244 * 119.99573 * 179.74864 * 12 11 10 14 14 C 1.38238 * 119.99871 * 0.52587 * 13 12 11 15 15 C 1.38238 * 119.99795 * 359.74836 * 14 13 12 16 16 C 1.38229 * 120.00457 * 359.97438 * 15 14 13 17 17 C 1.53781 * 113.61451 * 301.46196 * 10 9 7 18 18 C 1.53774 * 87.07950 * 270.88354 * 17 10 9 19 19 H 1.09002 * 113.61973 * 89.11447 * 18 17 10 20 20 F 1.39905 * 113.61682 * 219.93361 * 18 17 10 21 21 C 1.53778 * 113.61605 * 203.96200 * 10 9 7 22 22 C 1.36408 * 105.61515 * 0.38668 * 6 5 4 23 23 O 1.33651 * 108.39913 * 359.76187 * 22 6 5 24 24 H 0.96693 * 114.00082 * 60.00160 * 1 2 3 25 25 H 1.09001 * 109.47194 * 120.00232 * 2 1 3 26 26 H 1.48503 * 109.99790 * 298.68508 * 3 2 1 27 27 H 1.48500 * 109.99962 * 59.99952 * 3 2 1 28 28 H 1.07995 * 127.02246 * 359.97438 * 5 4 2 29 29 H 0.96994 * 119.99886 * 355.26189 * 9 7 6 30 30 H 1.07995 * 120.00600 * 0.02562 * 12 11 10 31 31 H 1.07997 * 119.99772 * 180.29180 * 13 12 11 32 32 H 1.07994 * 119.99855 * 179.76826 * 14 13 12 33 33 H 1.08000 * 119.99605 * 179.97438 * 15 14 13 34 34 H 1.08000 * 120.00414 * 179.97438 * 16 15 14 35 35 H 1.09002 * 113.60993 * 25.43093 * 17 10 9 36 36 H 1.09000 * 113.61689 * 156.33187 * 17 10 9 37 37 H 1.08998 * 113.61404 * 203.66253 * 21 10 9 38 38 H 1.08997 * 113.61304 * 334.56681 * 21 10 9 39 39 H 1.08000 * 125.79980 * 179.72860 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7105 -1.2305 5 6 1.6797 -1.9897 -1.5475 6 6 2.3683 -2.2327 -2.8236 7 6 2.3968 -3.4879 -3.5955 8 8 1.8009 -4.4664 -3.1876 9 7 3.0832 -3.5513 -4.7537 10 6 3.1983 -4.8250 -5.4682 11 6 1.9111 -5.2422 -6.1316 12 6 1.7679 -6.5297 -6.6142 13 6 0.5852 -6.9139 -7.2180 14 6 -0.4503 -6.0074 -7.3490 15 6 -0.3049 -4.7183 -6.8715 16 6 0.8756 -4.3358 -6.2626 17 6 3.8525 -5.9410 -4.6366 18 6 5.2027 -5.4502 -5.1851 19 1 5.6652 -4.6734 -4.5762 20 9 6.0865 -6.4858 -5.5075 21 6 4.4241 -4.9038 -6.3935 22 6 2.9796 -1.0554 -3.1411 23 8 2.7066 -0.1661 -2.1814 24 1 -0.3933 0.4416 -0.7650 25 1 1.7924 -0.5139 0.8900 26 1 1.5879 2.4585 -1.2242 27 1 1.5616 2.4679 1.2085 28 1 1.0902 -2.6959 -0.9819 29 1 3.5011 -2.7536 -5.1141 30 1 2.5783 -7.2367 -6.5154 31 1 0.4716 -7.9211 -7.5908 32 1 -1.3728 -6.3065 -7.8241 33 1 -1.1137 -4.0101 -6.9742 34 1 0.9893 -3.3285 -5.8899 35 1 3.7429 -5.8050 -3.5607 36 1 3.5860 -6.9450 -4.9668 37 1 4.3138 -5.6243 -7.2039 38 1 4.7759 -3.9306 -6.7358 39 1 3.5824 -0.8730 -4.0184 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12905100_13456056.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:40:27 Heat of formation + Delta-G solvation = -28.897706 kcal Electronic energy + Delta-G solvation = -26458.225686 eV Core-core repulsion = 22443.040806 eV Total energy + Delta-G solvation = -4015.184880 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 318.110 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -48.61951 -43.72677 -41.89499 -39.75466 -38.50388 -38.17408 -34.71828 -33.69070 -32.09087 -31.82631 -31.50897 -27.20188 -26.90844 -26.15332 -24.72389 -23.53601 -22.53982 -22.30334 -21.16650 -20.38491 -19.39536 -18.63010 -17.86810 -17.55405 -17.35785 -17.33695 -16.93851 -16.62703 -16.20901 -16.05111 -15.87333 -15.72033 -15.57106 -15.29914 -14.73970 -14.37991 -14.22286 -14.01659 -13.99860 -13.93174 -13.69424 -13.46975 -13.33691 -12.95753 -12.59837 -12.31882 -12.15010 -11.98824 -11.73598 -11.48119 -11.18481 -10.97057 -10.77815 -10.33462 -9.88562 -9.79865 -9.64926 -4.91746 0.26358 0.33855 0.43457 0.80802 1.18483 1.52918 1.74677 1.85170 1.96641 2.22714 2.70154 3.15827 3.19887 3.22464 3.41043 3.42026 3.54707 3.58993 3.81103 3.90120 4.01933 4.02992 4.13903 4.20730 4.35326 4.44013 4.49186 4.51252 4.56384 4.58385 4.66676 4.70005 4.82343 4.89847 4.98626 5.00856 5.10889 5.12531 5.32028 5.49854 5.56583 5.64571 5.82967 6.03284 6.33728 6.41971 7.13221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.540 6.540 2 C -0.047 4.047 3 Si 0.793 3.207 4 C -0.050 4.050 5 C -0.151 4.151 6 C -0.268 4.268 7 C 0.592 3.408 8 O -0.565 6.565 9 N -0.694 5.694 10 C 0.198 3.802 11 C -0.082 4.082 12 C -0.123 4.123 13 C -0.127 4.127 14 C -0.132 4.132 15 C -0.133 4.133 16 C -0.115 4.115 17 C -0.164 4.164 18 C 0.068 3.932 19 H 0.132 0.868 20 F -0.219 7.219 21 C -0.136 4.136 22 C 0.068 3.932 23 O -0.164 6.164 24 H 0.390 0.610 25 H 0.147 0.853 26 H -0.285 1.285 27 H -0.290 1.290 28 H 0.141 0.859 29 H 0.422 0.578 30 H 0.134 0.866 31 H 0.139 0.861 32 H 0.136 0.864 33 H 0.131 0.869 34 H 0.120 0.880 35 H 0.071 0.929 36 H 0.101 0.899 37 H 0.111 0.889 38 H 0.122 0.878 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.756 5.665 -3.519 8.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.348 6.348 2 C -0.155 4.155 3 Si 0.696 3.304 4 C -0.098 4.098 5 C -0.171 4.171 6 C -0.273 4.273 7 C 0.381 3.619 8 O -0.444 6.444 9 N -0.347 5.347 10 C 0.111 3.889 11 C -0.083 4.083 12 C -0.142 4.142 13 C -0.145 4.145 14 C -0.150 4.150 15 C -0.151 4.151 16 C -0.133 4.133 17 C -0.202 4.202 18 C 0.032 3.968 19 H 0.149 0.851 20 F -0.200 7.200 21 C -0.173 4.173 22 C -0.003 4.003 23 O -0.059 6.059 24 H 0.240 0.760 25 H 0.164 0.836 26 H -0.212 1.212 27 H -0.217 1.217 28 H 0.159 0.841 29 H 0.261 0.739 30 H 0.151 0.849 31 H 0.157 0.843 32 H 0.154 0.846 33 H 0.149 0.851 34 H 0.138 0.862 35 H 0.090 0.910 36 H 0.119 0.881 37 H 0.130 0.870 38 H 0.140 0.860 39 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges 4.341 5.764 -2.652 7.687 hybrid contribution -1.445 -0.553 -0.474 1.618 sum 2.895 5.211 -3.126 6.731 Atomic orbital electron populations 1.86654 1.17554 1.80588 1.50035 1.24702 0.83448 1.13321 0.93987 0.93466 0.89778 0.70218 0.76987 1.22654 0.99709 0.93424 0.94041 1.22523 1.02225 0.96021 0.96288 1.21420 1.10142 0.95812 0.99881 1.17435 0.77581 0.86580 0.80272 1.90833 1.44679 1.38608 1.70291 1.45296 1.55470 1.11438 1.22525 1.19591 0.91898 0.84694 0.92760 1.19814 0.95436 0.94373 0.98675 1.21166 0.98615 0.95548 0.98834 1.21425 0.93365 1.00498 0.99168 1.21460 0.99742 0.93756 0.99993 1.21403 0.97927 0.97116 0.98656 1.21028 0.93456 0.99770 0.99016 1.24053 0.94939 0.99812 1.01405 1.23308 0.86808 0.88188 0.98484 0.85086 1.92801 1.71662 1.61670 1.93836 1.23941 0.91289 1.05404 0.96694 1.25367 0.97108 0.85200 0.92579 1.83723 1.54131 1.40149 1.27894 0.75956 0.83564 1.21168 1.21657 0.84125 0.73891 0.84873 0.84311 0.84603 0.85089 0.86168 0.90977 0.88060 0.87033 0.86016 0.71910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.71 12.87 -148.98 -1.92 -2.63 16 2 C -0.05 0.10 2.97 71.24 0.21 0.32 16 3 Si 0.79 -3.28 32.09 68.60 2.20 -1.08 16 4 C -0.05 0.04 6.20 24.76 0.15 0.19 16 5 C -0.15 -0.56 10.88 23.65 0.26 -0.30 16 6 C -0.27 -0.02 6.31 -18.99 -0.12 -0.14 16 7 C 0.59 1.93 6.49 86.65 0.56 2.49 16 8 O -0.57 -7.70 15.45 -4.08 -0.06 -7.77 16 9 N -0.69 3.15 4.12 -427.18 -1.76 1.39 16 10 C 0.20 -0.28 0.94 3.38 0.00 -0.28 16 11 C -0.08 -0.27 4.86 -19.86 -0.10 -0.36 16 12 C -0.12 -0.41 8.70 22.27 0.19 -0.22 16 13 C -0.13 -0.41 10.05 22.27 0.22 -0.18 16 14 C -0.13 -0.47 10.05 22.27 0.22 -0.25 16 15 C -0.13 -0.57 10.05 22.27 0.22 -0.35 16 16 C -0.11 -0.49 9.05 22.27 0.20 -0.29 16 17 C -0.16 -0.27 6.61 31.12 0.21 -0.07 16 18 C 0.07 -0.19 5.57 31.12 0.17 -0.01 16 19 H 0.13 -0.92 8.14 -2.39 -0.02 -0.94 16 20 F -0.22 -0.78 17.41 44.97 0.78 0.00 16 21 C -0.14 0.84 7.20 31.12 0.22 1.06 16 22 C 0.07 -0.55 11.61 67.39 0.78 0.23 16 23 O -0.16 0.71 8.89 4.47 0.04 0.75 16 24 H 0.39 -1.74 8.70 -74.06 -0.64 -2.38 16 25 H 0.15 -0.67 7.96 -2.39 -0.02 -0.69 16 26 H -0.29 -0.21 7.11 99.48 0.71 0.50 16 27 H -0.29 -0.74 7.11 99.48 0.71 -0.03 16 28 H 0.14 1.02 8.06 -2.91 -0.02 1.00 16 29 H 0.42 -5.61 7.70 -92.71 -0.71 -6.33 16 30 H 0.13 0.05 6.56 -2.91 -0.02 0.03 16 31 H 0.14 -0.10 8.06 -2.91 -0.02 -0.12 16 32 H 0.14 -0.03 8.06 -2.91 -0.02 -0.05 16 33 H 0.13 0.14 8.06 -2.91 -0.02 0.12 16 34 H 0.12 0.26 6.86 -2.91 -0.02 0.24 16 35 H 0.07 0.45 6.93 -2.39 -0.02 0.43 16 36 H 0.10 0.26 6.23 -2.39 -0.01 0.25 16 37 H 0.11 -0.57 7.78 -2.39 -0.02 -0.59 16 38 H 0.12 -1.49 8.11 -2.39 -0.02 -1.51 16 39 H 0.27 -5.24 7.48 -2.91 -0.02 -5.27 16 Total: 0.00 -25.33 337.27 2.50 -22.83 By element: Atomic # 1 Polarization: -15.13 SS G_CDS: -0.21 Total: -15.34 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: 3.42 Total: 1.85 kcal Atomic # 7 Polarization: 3.15 SS G_CDS: -1.76 Total: 1.39 kcal Atomic # 8 Polarization: -7.71 SS G_CDS: -1.94 Total: -9.65 kcal Atomic # 9 Polarization: -0.78 SS G_CDS: 0.78 Total: 0.00 kcal Atomic # 14 Polarization: -3.28 SS G_CDS: 2.20 Total: -1.08 kcal Total: -25.33 2.50 -22.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12905100_13456056.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.072 kcal (2) G-P(sol) polarization free energy of solvation -25.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds