Wall clock time and date at job start Sat Mar 6 2021 20:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86301 * 109.46730 * 2 1 4 4 C 1.50691 * 109.47601 * 239.99852 * 2 1 3 5 5 C 1.31119 * 118.54823 * 119.99323 * 4 2 1 6 6 N 1.38920 * 121.84797 * 179.59274 * 5 4 2 7 7 C 1.47030 * 118.88597 * 13.32567 * 6 5 4 8 8 C 1.50699 * 109.82334 * 196.79355 * 7 6 5 9 9 O 1.21279 * 120.00206 * 19.99601 * 8 7 6 10 10 N 1.34779 * 119.99952 * 199.99909 * 8 7 6 11 11 C 1.46505 * 120.00188 * 175.05207 * 10 8 7 12 12 C 1.50701 * 112.84862 * 291.20358 * 11 10 8 13 13 C 1.38239 * 119.99899 * 346.62749 * 12 11 10 14 14 C 1.38236 * 119.99664 * 179.78939 * 13 12 11 15 15 C 1.38234 * 119.99908 * 0.46420 * 14 13 12 16 16 C 1.38233 * 120.00148 * 359.76633 * 15 14 13 17 17 C 1.38231 * 119.99637 * 166.90184 * 12 11 10 18 18 C 1.53776 * 113.61295 * 159.89257 * 11 10 8 19 19 C 1.53784 * 87.08186 * 270.88420 * 18 11 10 20 20 H 1.09000 * 113.61140 * 89.12081 * 19 18 11 21 21 F 1.39895 * 113.61265 * 220.01970 * 19 18 11 22 22 C 1.53779 * 87.08011 * 334.56936 * 19 18 11 23 23 C 1.53545 * 107.65762 * 316.33177 * 7 6 5 24 24 C 1.50204 * 118.54824 * 300.00313 * 4 2 1 25 25 H 0.96696 * 113.99958 * 60.00524 * 1 2 3 26 26 H 1.09007 * 109.46902 * 119.99234 * 2 1 3 27 27 H 1.48501 * 110.00205 * 60.00015 * 3 2 1 28 28 H 1.48507 * 109.99684 * 181.31812 * 3 2 1 29 29 H 1.07995 * 119.07433 * 359.60461 * 5 4 2 30 30 H 0.97001 * 120.55898 * 193.59475 * 6 5 4 31 31 H 1.09004 * 109.82474 * 75.87134 * 7 6 5 32 32 H 0.97008 * 120.00227 * 355.05251 * 10 8 7 33 33 H 1.08002 * 120.00146 * 0.02562 * 13 12 11 34 34 H 1.07996 * 119.99845 * 180.25272 * 14 13 12 35 35 H 1.08002 * 120.00066 * 179.79521 * 15 14 13 36 36 H 1.08007 * 120.00206 * 180.02562 * 16 15 14 37 37 H 1.07996 * 120.00363 * 359.97438 * 17 12 11 38 38 H 1.08993 * 113.61730 * 25.43908 * 18 11 10 39 39 H 1.09009 * 113.60966 * 156.33858 * 18 11 10 40 40 H 1.09001 * 113.61477 * 270.87931 * 22 19 18 41 41 H 1.09004 * 113.68367 * 139.99222 * 22 19 18 42 42 H 1.08993 * 109.62346 * 180.67108 * 23 7 6 43 43 H 1.08994 * 109.62201 * 301.04083 * 23 7 6 44 44 H 1.09005 * 109.33288 * 79.78375 * 24 4 2 45 45 H 1.09001 * 109.32675 * 320.30817 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0498 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2303 5 6 2.6831 -0.0459 -2.0745 6 7 3.1901 -0.6355 -3.2257 7 6 2.6456 -1.9306 -3.6593 8 6 3.5822 -2.5729 -4.6498 9 8 4.7418 -2.2218 -4.7036 10 7 3.1312 -3.5375 -5.4760 11 6 4.0109 -4.0857 -6.5113 12 6 4.3173 -3.0942 -7.6040 13 6 3.5774 -1.9312 -7.7095 14 6 3.8614 -1.0197 -8.7091 15 6 4.8788 -1.2755 -9.6092 16 6 5.6156 -2.4407 -9.5067 17 6 5.3345 -3.3503 -8.5043 18 6 3.5654 -5.4620 -7.0329 19 6 4.4169 -6.0760 -5.9091 20 1 3.8732 -6.2124 -4.9742 21 9 5.1216 -7.2192 -6.3009 22 6 5.2581 -4.7894 -5.9506 23 6 2.5136 -2.8204 -2.4150 24 6 1.5487 -2.1483 -1.4356 25 1 -0.3933 0.4416 -0.7651 26 1 1.7923 -0.5138 0.8901 27 1 1.5613 2.4679 1.2085 28 1 3.5345 1.7704 -0.0321 29 1 2.9148 0.9887 -1.8689 30 1 3.8942 -0.2019 -3.7328 31 1 1.6663 -1.7858 -4.1157 32 1 2.2240 -3.8689 -5.3852 33 1 2.7801 -1.7331 -7.0085 34 1 3.2860 -0.1092 -8.7890 35 1 5.0985 -0.5649 -10.3923 36 1 6.4109 -2.6404 -10.2097 37 1 5.9099 -4.2607 -8.4244 38 1 2.4969 -5.6462 -6.9215 39 1 3.9332 -5.6897 -8.0335 40 1 6.0886 -4.8332 -6.6552 41 1 5.5568 -4.4296 -4.9660 42 1 2.1224 -3.7962 -2.7026 43 1 3.4901 -2.9413 -1.9462 44 1 0.5358 -2.1986 -1.8351 45 1 1.5830 -2.6707 -0.4795 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12905100_15413834.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:40:36 Heat of formation + Delta-G solvation = -28.912896 kcal Electronic energy + Delta-G solvation = -29314.595560 eV Core-core repulsion = 25214.279585 eV Total energy + Delta-G solvation = -4100.315974 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 333.153 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -48.64112 -42.11909 -40.59674 -39.36353 -38.50478 -37.27823 -34.58195 -33.16207 -32.85047 -31.90158 -31.71560 -27.74502 -27.15344 -25.87982 -25.24234 -23.82074 -23.53390 -22.59461 -21.89979 -20.41722 -19.36065 -19.09175 -18.56452 -17.97328 -17.34260 -17.12926 -16.82693 -16.62913 -16.20700 -16.07730 -16.03077 -15.70354 -15.60149 -15.36076 -15.19363 -14.87994 -14.45044 -14.36128 -14.16694 -14.07581 -13.97155 -13.86636 -13.54063 -13.32808 -12.99482 -12.90421 -12.61486 -12.30752 -12.21642 -11.97558 -11.93367 -11.85040 -11.71897 -11.45802 -11.22638 -10.85524 -10.30991 -10.15107 -9.86571 -9.63887 -8.43959 -5.01206 0.35258 0.45343 1.31871 1.40337 1.46172 1.61524 1.77297 1.99679 2.61971 2.71769 3.15110 3.22315 3.40672 3.43394 3.59212 3.68745 3.79953 3.82764 3.88091 3.99021 4.04400 4.05810 4.16741 4.23440 4.34315 4.46675 4.49314 4.56613 4.59078 4.63531 4.65344 4.65870 4.70084 4.77828 4.83080 4.99269 5.01862 5.03710 5.12252 5.24968 5.29777 5.33024 5.51796 5.58403 5.59153 5.65676 6.05027 6.24319 6.43409 6.80632 6.96501 7.09943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.562 6.562 2 C -0.045 4.045 3 Si 0.757 3.243 4 C -0.287 4.287 5 C 0.141 3.859 6 N -0.737 5.737 7 C 0.141 3.859 8 C 0.518 3.482 9 O -0.554 6.554 10 N -0.695 5.695 11 C 0.200 3.800 12 C -0.082 4.082 13 C -0.113 4.113 14 C -0.129 4.129 15 C -0.131 4.131 16 C -0.128 4.128 17 C -0.125 4.125 18 C -0.139 4.139 19 C 0.065 3.935 20 H 0.130 0.870 21 F -0.220 7.220 22 C -0.162 4.162 23 C -0.124 4.124 24 C -0.049 4.049 25 H 0.392 0.608 26 H 0.089 0.911 27 H -0.307 1.307 28 H -0.296 1.296 29 H 0.141 0.859 30 H 0.406 0.594 31 H 0.119 0.881 32 H 0.424 0.576 33 H 0.126 0.874 34 H 0.136 0.864 35 H 0.135 0.865 36 H 0.136 0.864 37 H 0.129 0.871 38 H 0.118 0.882 39 H 0.109 0.891 40 H 0.098 0.902 41 H 0.074 0.926 42 H 0.103 0.897 43 H 0.051 0.949 44 H 0.082 0.918 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.541 -0.032 -4.466 7.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.370 6.370 2 C -0.156 4.156 3 Si 0.666 3.334 4 C -0.297 4.297 5 C 0.021 3.979 6 N -0.369 5.369 7 C 0.032 3.968 8 C 0.304 3.696 9 O -0.430 6.430 10 N -0.349 5.349 11 C 0.113 3.887 12 C -0.083 4.083 13 C -0.132 4.132 14 C -0.147 4.147 15 C -0.149 4.149 16 C -0.146 4.146 17 C -0.143 4.143 18 C -0.176 4.176 19 C 0.029 3.971 20 H 0.147 0.853 21 F -0.201 7.201 22 C -0.200 4.200 23 C -0.163 4.163 24 C -0.087 4.087 25 H 0.242 0.758 26 H 0.107 0.893 27 H -0.236 1.236 28 H -0.223 1.223 29 H 0.157 0.843 30 H 0.242 0.758 31 H 0.137 0.863 32 H 0.263 0.737 33 H 0.144 0.856 34 H 0.154 0.846 35 H 0.153 0.847 36 H 0.154 0.846 37 H 0.147 0.853 38 H 0.137 0.863 39 H 0.128 0.872 40 H 0.116 0.884 41 H 0.093 0.907 42 H 0.121 0.879 43 H 0.070 0.930 44 H 0.100 0.900 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.225 0.360 -3.591 5.557 hybrid contribution 0.586 -0.388 0.305 0.766 sum -3.639 -0.028 -3.287 4.904 Atomic orbital electron populations 1.86429 1.17981 1.82062 1.50489 1.24707 0.84824 1.08556 0.97538 0.94262 0.77357 0.76793 0.84974 1.20983 1.11565 0.97845 0.99298 1.20448 0.95009 0.95980 0.86506 1.44370 1.43571 1.21110 1.27860 1.21122 0.96454 0.85179 0.94008 1.20863 0.88465 0.79349 0.80895 1.90762 1.19467 1.62843 1.69962 1.45477 1.17319 1.39612 1.32478 1.19542 0.91770 0.90957 0.86475 1.19761 0.96673 0.95844 0.96035 1.21060 0.99868 0.93764 0.98467 1.21423 0.98120 0.99871 0.95238 1.21469 0.96040 0.97718 0.99699 1.21405 1.00145 0.94454 0.98578 1.21134 0.97457 1.00335 0.95366 1.23946 1.03272 0.90599 0.99821 1.23339 0.93483 0.80204 1.00087 0.85282 1.92796 1.80794 1.53975 1.92557 1.24037 0.97893 0.94753 1.03352 1.21863 1.00524 0.99106 0.94770 1.19901 0.98765 0.91348 0.98656 0.75800 0.89349 1.23618 1.22349 0.84267 0.75769 0.86316 0.73650 0.85563 0.84647 0.84672 0.84643 0.85310 0.86320 0.87233 0.88356 0.90736 0.87855 0.93000 0.89972 0.92010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.10 12.78 -148.98 -1.90 -2.01 16 2 C -0.04 0.00 2.83 71.23 0.20 0.20 16 3 Si 0.76 -0.60 29.68 68.60 2.04 1.44 16 4 C -0.29 0.41 5.44 -16.76 -0.09 0.32 16 5 C 0.14 -0.30 9.63 83.41 0.80 0.50 16 6 N -0.74 1.46 5.47 -329.00 -1.80 -0.34 16 7 C 0.14 -0.75 3.36 44.33 0.15 -0.60 16 8 C 0.52 -1.07 5.58 87.66 0.49 -0.58 16 9 O -0.55 -3.90 14.51 -3.03 -0.04 -3.95 16 10 N -0.69 5.00 4.24 -423.92 -1.80 3.20 16 11 C 0.20 -0.66 0.94 3.38 0.00 -0.66 16 12 C -0.08 -0.06 4.89 -19.87 -0.10 -0.16 16 13 C -0.11 -0.07 8.98 22.27 0.20 0.13 16 14 C -0.13 -0.11 10.05 22.27 0.22 0.11 16 15 C -0.13 -0.16 10.05 22.27 0.22 0.07 16 16 C -0.13 -0.20 10.05 22.27 0.22 0.03 16 17 C -0.12 -0.21 8.71 22.27 0.19 -0.02 16 18 C -0.14 0.90 7.19 31.12 0.22 1.13 16 19 C 0.06 -0.20 5.58 31.12 0.17 -0.02 16 20 H 0.13 -0.91 8.14 -2.39 -0.02 -0.93 16 21 F -0.22 -0.82 17.41 44.97 0.78 -0.03 16 22 C -0.16 -0.05 6.62 31.12 0.21 0.15 16 23 C -0.12 0.60 5.47 30.79 0.17 0.77 16 24 C -0.05 0.15 5.75 29.71 0.17 0.32 16 25 H 0.39 -3.26 8.70 -74.06 -0.64 -3.90 16 26 H 0.09 0.25 7.96 -2.38 -0.02 0.23 16 27 H -0.31 -2.32 7.11 99.48 0.71 -1.61 16 28 H -0.30 -1.41 7.10 99.48 0.71 -0.70 16 29 H 0.14 -0.63 4.37 -2.91 -0.01 -0.65 16 30 H 0.41 -0.17 8.11 -92.71 -0.75 -0.92 16 31 H 0.12 -1.22 8.14 -2.38 -0.02 -1.24 16 32 H 0.42 -6.02 8.69 -92.70 -0.81 -6.83 16 33 H 0.13 -0.31 6.73 -2.91 -0.02 -0.33 16 34 H 0.14 -0.38 8.06 -2.91 -0.02 -0.40 16 35 H 0.14 -0.31 8.06 -2.91 -0.02 -0.34 16 36 H 0.14 -0.24 8.06 -2.91 -0.02 -0.26 16 37 H 0.13 -0.05 6.55 -2.91 -0.02 -0.07 16 38 H 0.12 -1.40 8.10 -2.39 -0.02 -1.42 16 39 H 0.11 -0.57 7.79 -2.38 -0.02 -0.59 16 40 H 0.10 0.16 6.22 -2.39 -0.01 0.15 16 41 H 0.07 0.33 6.95 -2.39 -0.02 0.31 16 42 H 0.10 -1.03 8.14 -2.39 -0.02 -1.05 16 43 H 0.05 0.03 8.14 -2.39 -0.02 0.01 16 44 H 0.08 -0.44 8.14 -2.38 -0.02 -0.46 16 45 H 0.06 -0.04 8.14 -2.39 -0.02 -0.06 16 Total: 0.00 -20.70 362.59 -0.37 -21.07 By element: Atomic # 1 Polarization: -19.94 SS G_CDS: -1.11 Total: -21.06 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: 3.46 Total: 1.68 kcal Atomic # 7 Polarization: 6.45 SS G_CDS: -3.60 Total: 2.86 kcal Atomic # 8 Polarization: -4.01 SS G_CDS: -1.95 Total: -5.96 kcal Atomic # 9 Polarization: -0.82 SS G_CDS: 0.78 Total: -0.03 kcal Atomic # 14 Polarization: -0.60 SS G_CDS: 2.04 Total: 1.44 kcal Total: -20.70 -0.37 -21.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12905100_15413834.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.838 kcal (2) G-P(sol) polarization free energy of solvation -20.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds