Wall clock time and date at job start Sat Mar 6 2021 20:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86305 * 109.47130 * 2 1 4 4 C 1.50701 * 109.47647 * 119.99945 * 2 1 3 5 5 C 1.34495 * 125.49699 * 209.97563 * 4 2 1 6 6 C 1.46751 * 106.36139 * 180.02562 * 5 4 2 7 7 C 1.47271 * 126.96341 * 179.97438 * 6 5 4 8 8 O 1.21629 * 119.99520 * 180.02562 * 7 6 5 9 9 N 1.34773 * 120.00319 * 0.02562 * 7 6 5 10 10 C 1.46502 * 120.00210 * 185.47625 * 9 7 6 11 11 C 1.50700 * 112.84641 * 56.53477 * 10 9 7 12 12 C 1.38237 * 120.00252 * 35.76590 * 11 10 9 13 13 C 1.38237 * 120.00451 * 180.20708 * 12 11 10 14 14 C 1.38234 * 119.99511 * 359.53607 * 13 12 11 15 15 C 1.38236 * 120.00025 * 0.27313 * 14 13 12 16 16 C 1.38229 * 119.99943 * 215.55201 * 11 10 9 17 17 C 1.53774 * 113.68956 * 285.26833 * 10 9 7 18 18 C 1.53784 * 87.08288 * 270.87013 * 17 10 9 19 19 H 1.08998 * 113.68917 * 89.12547 * 18 17 10 20 20 F 1.39899 * 113.61535 * 220.02001 * 18 17 10 21 21 C 1.53775 * 113.61481 * 187.73163 * 10 9 7 22 22 C 1.36329 * 106.06766 * 0.21264 * 6 5 4 23 23 C 1.50996 * 126.79433 * 180.36823 * 22 6 5 24 24 C 1.53400 * 108.30370 * 163.94954 * 23 22 6 25 25 C 1.53157 * 109.03958 * 48.28365 * 24 23 22 26 26 C 1.53121 * 109.53222 * 290.42883 * 25 24 23 27 27 N 1.35220 * 108.65946 * 359.65645 * 22 6 5 28 28 H 0.96704 * 113.99420 * 299.99406 * 1 2 3 29 29 H 1.09005 * 109.47329 * 240.00191 * 2 1 3 30 30 H 1.48497 * 109.99802 * 300.00078 * 3 2 1 31 31 H 1.48500 * 110.00064 * 61.32101 * 3 2 1 32 32 H 1.07995 * 126.81439 * 0.03180 * 5 4 2 33 33 H 0.97002 * 119.99562 * 5.48431 * 9 7 6 34 34 H 1.08005 * 119.99896 * 0.02562 * 12 11 10 35 35 H 1.07993 * 120.00337 * 179.80511 * 13 12 11 36 36 H 1.07997 * 119.99977 * 180.25041 * 14 13 12 37 37 H 1.08004 * 120.00006 * 179.97438 * 15 14 13 38 38 H 1.07994 * 120.00110 * 0.02562 * 16 11 10 39 39 H 1.09000 * 113.61840 * 25.41813 * 17 10 9 40 40 H 1.09004 * 113.61424 * 156.32024 * 17 10 9 41 41 H 1.08996 * 113.61507 * 203.75477 * 21 10 9 42 42 H 1.09004 * 113.61639 * 334.57102 * 21 10 9 43 43 H 1.09002 * 109.84332 * 44.15105 * 23 22 6 44 44 H 1.08997 * 109.55682 * 283.58109 * 23 22 6 45 45 H 1.09002 * 109.53892 * 288.41815 * 24 23 22 46 46 H 1.09005 * 109.61353 * 168.20049 * 24 23 22 47 47 H 1.09003 * 109.46065 * 170.40827 * 25 24 23 48 48 H 1.09003 * 109.44842 * 50.44466 * 25 24 23 49 49 H 1.09001 * 109.56566 * 291.14596 * 26 25 24 50 50 H 1.09000 * 109.56523 * 170.80530 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9315 -0.7104 1.2304 5 6 3.0861 -0.4466 1.8677 6 6 3.1558 -1.3782 2.9995 7 6 4.2345 -1.4808 3.9968 8 8 4.1621 -2.3051 4.8882 9 7 5.3019 -0.6614 3.9218 10 6 6.4298 -0.8417 4.8392 11 6 7.0205 -2.2267 4.7752 12 6 7.0813 -2.8971 3.5678 13 6 7.6192 -4.1692 3.5097 14 6 8.1051 -4.7671 4.6574 15 6 8.0479 -4.0951 5.8641 16 6 7.5055 -2.8249 5.9230 17 6 6.1446 -0.3593 6.2712 18 6 6.6594 1.0195 5.8251 19 1 5.8832 1.6644 5.4130 20 9 7.4456 1.6623 6.7872 21 6 7.4784 0.2798 4.7542 22 6 2.0221 -2.1329 2.9374 23 6 1.6158 -3.2343 3.8869 24 6 0.1227 -3.5205 3.6820 25 6 -0.1562 -3.6707 2.1835 26 6 -0.0049 -2.3109 1.4959 27 7 1.2886 -1.7252 1.8771 28 1 -0.3932 0.4417 0.7652 29 1 1.7924 -0.5138 -0.8900 30 1 1.5615 2.4679 -1.2085 31 1 1.5879 2.4586 1.2243 32 1 3.8167 0.3022 1.5998 33 1 5.3233 0.0478 3.2604 34 1 6.7058 -2.4281 2.6702 35 1 7.6638 -4.6941 2.5670 36 1 8.5290 -5.7593 4.6114 37 1 8.4272 -4.5624 6.7609 38 1 7.4609 -2.3000 6.8657 39 1 5.0863 -0.3668 6.5319 40 1 6.7708 -0.8360 7.0254 41 1 8.4692 -0.0222 5.0935 42 1 7.4978 0.7873 3.7897 43 1 1.7919 -2.9197 4.9156 44 1 2.1949 -4.1325 3.6730 45 1 -0.4651 -2.6940 4.0813 46 1 -0.1472 -4.4424 4.1974 47 1 -1.1714 -4.0401 2.0383 48 1 0.5526 -4.3771 1.7514 49 1 -0.8120 -1.6501 1.8121 50 1 -0.0413 -2.4427 0.4145 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12905100_16915396.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:40:43 Heat of formation + Delta-G solvation = -7.499318 kcal Electronic energy + Delta-G solvation = -35034.832249 eV Core-core repulsion = 30523.454938 eV Total energy + Delta-G solvation = -4511.377312 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 371.168 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -48.57023 -42.79675 -41.64738 -39.52056 -38.44552 -38.03366 -36.88180 -34.14773 -33.43440 -31.89106 -31.74656 -31.15364 -29.44431 -27.14037 -26.71772 -25.83386 -24.64190 -24.04967 -23.37622 -22.48206 -21.70727 -21.26536 -20.25678 -19.60489 -18.95063 -18.43704 -17.34727 -17.25224 -17.07308 -16.81388 -16.59159 -16.46541 -16.05457 -15.83895 -15.59247 -15.52623 -15.39923 -15.31583 -15.16821 -15.05879 -14.68973 -14.59516 -14.37145 -14.30204 -13.92553 -13.88134 -13.72198 -13.42417 -13.24489 -13.16542 -12.73413 -12.58092 -12.40898 -12.18365 -12.17309 -12.03542 -11.86748 -11.85996 -11.76687 -11.57858 -11.34887 -10.89050 -10.85699 -10.14064 -9.80232 -9.61253 -9.51681 -9.03376 -4.89916 0.42843 0.51888 0.74920 1.07952 1.45263 1.69120 1.78173 2.03223 2.29681 2.57468 2.81795 3.22441 3.24467 3.30843 3.47445 3.50098 3.55971 3.61931 3.67022 3.76726 3.80037 3.86920 3.96817 4.12597 4.17446 4.25170 4.28472 4.30663 4.35433 4.37675 4.53234 4.56868 4.62905 4.63607 4.67330 4.73746 4.74540 4.76158 4.77439 4.81382 4.90131 4.93803 4.99642 5.07844 5.09851 5.16788 5.17951 5.22142 5.48542 5.57646 5.63952 5.74511 5.77220 6.03939 6.11872 6.21849 6.36248 6.69966 7.42255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.546 6.546 2 C -0.056 4.056 3 Si 0.802 3.198 4 C -0.018 4.018 5 C -0.159 4.159 6 C -0.252 4.252 7 C 0.596 3.404 8 O -0.569 6.569 9 N -0.697 5.697 10 C 0.201 3.799 11 C -0.071 4.071 12 C -0.113 4.113 13 C -0.131 4.131 14 C -0.132 4.132 15 C -0.130 4.130 16 C -0.125 4.125 17 C -0.169 4.169 18 C 0.067 3.933 19 H 0.131 0.869 20 F -0.220 7.220 21 C -0.139 4.139 22 C 0.102 3.898 23 C -0.052 4.052 24 C -0.124 4.124 25 C -0.134 4.134 26 C 0.106 3.894 27 N -0.429 5.429 28 H 0.384 0.616 29 H 0.130 0.870 30 H -0.299 1.299 31 H -0.290 1.290 32 H 0.186 0.814 33 H 0.418 0.582 34 H 0.126 0.874 35 H 0.133 0.867 36 H 0.135 0.865 37 H 0.134 0.866 38 H 0.129 0.871 39 H 0.072 0.928 40 H 0.103 0.897 41 H 0.107 0.893 42 H 0.119 0.881 43 H 0.080 0.920 44 H 0.076 0.924 45 H 0.068 0.932 46 H 0.086 0.914 47 H 0.106 0.894 48 H 0.067 0.933 49 H 0.092 0.908 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.556 1.396 -4.729 4.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.353 6.353 2 C -0.165 4.165 3 Si 0.706 3.294 4 C -0.126 4.126 5 C -0.183 4.183 6 C -0.262 4.262 7 C 0.386 3.614 8 O -0.449 6.449 9 N -0.350 5.350 10 C 0.113 3.887 11 C -0.072 4.072 12 C -0.131 4.131 13 C -0.148 4.148 14 C -0.150 4.150 15 C -0.148 4.148 16 C -0.143 4.143 17 C -0.207 4.207 18 C 0.031 3.969 19 H 0.149 0.851 20 F -0.201 7.201 21 C -0.177 4.177 22 C -0.016 4.016 23 C -0.090 4.090 24 C -0.161 4.161 25 C -0.172 4.172 26 C -0.014 4.014 27 N -0.105 5.105 28 H 0.234 0.766 29 H 0.147 0.853 30 H -0.227 1.227 31 H -0.217 1.217 32 H 0.203 0.797 33 H 0.257 0.743 34 H 0.144 0.856 35 H 0.151 0.849 36 H 0.152 0.848 37 H 0.152 0.848 38 H 0.147 0.853 39 H 0.091 0.909 40 H 0.121 0.879 41 H 0.126 0.874 42 H 0.138 0.862 43 H 0.098 0.902 44 H 0.094 0.906 45 H 0.086 0.914 46 H 0.105 0.895 47 H 0.124 0.876 48 H 0.086 0.914 49 H 0.110 0.890 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -1.056 1.235 -4.795 5.062 hybrid contribution -1.172 -0.182 0.521 1.295 sum -2.227 1.053 -4.274 4.933 Atomic orbital electron populations 1.86570 1.18334 1.80097 1.50303 1.25053 0.83340 1.11777 0.96282 0.93551 0.89810 0.69857 0.76216 1.20984 0.96320 0.95592 0.99724 1.22026 0.98329 1.02564 0.95367 1.19943 0.98059 1.05858 1.02308 1.17450 0.81077 0.79694 0.83154 1.90781 1.79265 1.38160 1.36644 1.45316 1.16538 1.35495 1.37658 1.19528 0.87083 0.91774 0.90308 1.19646 0.98472 0.95368 0.93711 1.21043 0.99271 0.95136 0.97627 1.21380 0.98776 0.95525 0.99168 1.21423 1.00046 1.00668 0.92908 1.21383 0.99691 0.95024 0.98666 1.21250 0.99033 0.95834 0.98216 1.24133 1.03049 0.95819 0.97721 1.23300 0.93549 0.92312 0.87746 0.85117 1.92792 1.76707 1.84093 1.66518 1.23913 0.98309 0.93978 1.01457 1.20508 0.91884 0.98176 0.91033 1.20390 0.96685 0.94702 0.97204 1.21691 0.94611 1.03337 0.96498 1.21920 1.04501 0.95556 0.95220 1.22228 0.82283 0.95351 1.01577 1.44024 1.17843 1.27165 1.21511 0.76645 0.85288 1.22670 1.21691 0.79679 0.74297 0.85617 0.84918 0.84759 0.84774 0.85344 0.90899 0.87925 0.87445 0.86234 0.90159 0.90593 0.91356 0.89507 0.87553 0.91395 0.88957 0.88428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 1.37 10.68 -148.98 -1.59 -0.22 16 2 C -0.06 0.25 2.99 71.24 0.21 0.46 16 3 Si 0.80 -4.71 31.11 68.60 2.13 -2.58 16 4 C -0.02 0.03 6.15 40.99 0.25 0.28 16 5 C -0.16 0.41 9.09 23.64 0.21 0.63 16 6 C -0.25 -0.91 6.28 -19.12 -0.12 -1.03 16 7 C 0.60 3.33 7.08 86.62 0.61 3.95 16 8 O -0.57 -7.48 14.32 -4.12 -0.06 -7.54 16 9 N -0.70 0.86 4.58 -427.31 -1.96 -1.10 16 10 C 0.20 0.08 0.88 3.38 0.00 0.08 16 11 C -0.07 -0.33 4.06 -19.87 -0.08 -0.41 16 12 C -0.11 -0.53 9.02 22.27 0.20 -0.33 16 13 C -0.13 -0.60 10.05 22.27 0.22 -0.38 16 14 C -0.13 -0.61 10.05 22.27 0.22 -0.38 16 15 C -0.13 -0.66 10.05 22.27 0.22 -0.44 16 16 C -0.13 -0.72 9.27 22.27 0.21 -0.51 16 17 C -0.17 -0.39 6.72 31.12 0.21 -0.18 16 18 C 0.07 -0.09 5.58 31.12 0.17 0.09 16 19 H 0.13 -0.71 8.14 -2.39 -0.02 -0.73 16 20 F -0.22 -1.08 17.41 44.97 0.78 -0.29 16 21 C -0.14 0.56 7.23 31.12 0.23 0.78 16 22 C 0.10 0.44 6.57 41.69 0.27 0.71 16 23 C -0.05 -0.21 5.32 30.08 0.16 -0.05 16 24 C -0.12 0.19 5.98 30.78 0.18 0.37 16 25 C -0.13 0.52 5.92 30.69 0.18 0.70 16 26 C 0.11 -0.33 5.32 86.32 0.46 0.13 16 27 N -0.43 -0.26 3.11 -493.63 -1.54 -1.79 16 28 H 0.38 -2.55 8.63 -74.05 -0.64 -3.19 16 29 H 0.13 -0.78 7.96 -2.38 -0.02 -0.80 16 30 H -0.30 -0.49 7.11 99.48 0.71 0.21 16 31 H -0.29 0.03 7.11 99.48 0.71 0.74 16 32 H 0.19 -2.01 6.53 -2.91 -0.02 -2.03 16 33 H 0.42 -3.39 7.77 -92.71 -0.72 -4.11 16 34 H 0.13 0.27 7.73 -2.91 -0.02 0.25 16 35 H 0.13 0.13 8.06 -2.91 -0.02 0.11 16 36 H 0.13 0.10 8.06 -2.91 -0.02 0.07 16 37 H 0.13 0.20 8.06 -2.91 -0.02 0.17 16 38 H 0.13 0.47 5.67 -2.91 -0.02 0.46 16 39 H 0.07 0.41 8.08 -2.39 -0.02 0.39 16 40 H 0.10 0.29 5.66 -2.39 -0.01 0.28 16 41 H 0.11 -0.28 8.09 -2.39 -0.02 -0.30 16 42 H 0.12 -1.15 8.10 -2.39 -0.02 -1.17 16 43 H 0.08 0.60 7.40 -2.39 -0.02 0.59 16 44 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 45 H 0.07 -0.10 8.12 -2.39 -0.02 -0.12 16 46 H 0.09 -0.26 8.14 -2.38 -0.02 -0.28 16 47 H 0.11 -0.78 8.14 -2.39 -0.02 -0.80 16 48 H 0.07 -0.14 8.11 -2.39 -0.02 -0.16 16 49 H 0.09 -0.47 7.94 -2.39 -0.02 -0.49 16 50 H 0.10 -0.31 7.69 -2.39 -0.02 -0.33 16 Total: 0.00 -21.37 399.28 1.48 -19.89 By element: Atomic # 1 Polarization: -10.49 SS G_CDS: -0.34 Total: -10.83 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: 4.04 Total: 4.47 kcal Atomic # 7 Polarization: 0.60 SS G_CDS: -3.49 Total: -2.89 kcal Atomic # 8 Polarization: -6.11 SS G_CDS: -1.65 Total: -7.76 kcal Atomic # 9 Polarization: -1.08 SS G_CDS: 0.78 Total: -0.29 kcal Atomic # 14 Polarization: -4.71 SS G_CDS: 2.13 Total: -2.58 kcal Total: -21.37 1.48 -19.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12905100_16915396.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.392 kcal (2) G-P(sol) polarization free energy of solvation -21.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds