Wall clock time and date at job start Sat Mar 6 2021 20:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86300 * 109.46739 * 2 1 4 4 C 1.50701 * 109.46911 * 119.99672 * 2 1 3 5 5 C 1.38266 * 119.94152 * 65.00552 * 4 2 1 6 6 C 1.38143 * 120.05264 * 179.97438 * 5 4 2 7 7 C 1.38739 * 119.94764 * 0.02562 * 6 5 4 8 8 O 1.35894 * 120.05914 * 180.02562 * 7 6 5 9 9 C 1.42898 * 117.00066 * 179.97438 * 8 7 6 10 10 C 1.52996 * 109.47174 * 180.02562 * 9 8 7 11 11 C 1.50705 * 109.47454 * 180.02562 * 10 9 8 12 12 O 1.21287 * 119.99467 * 359.97438 * 11 10 9 13 13 N 1.34766 * 120.00388 * 180.27715 * 11 10 9 14 14 C 1.46499 * 120.00313 * 174.73309 * 13 11 10 15 15 C 1.50701 * 112.85059 * 65.10216 * 14 13 11 16 16 C 1.38238 * 119.99826 * 197.65944 * 15 14 13 17 17 C 1.38234 * 119.99523 * 179.81046 * 16 15 14 18 18 C 1.38235 * 120.00400 * 0.39533 * 17 16 15 19 19 C 1.38235 * 119.99493 * 359.85936 * 18 17 16 20 20 C 1.38231 * 120.00462 * 359.95249 * 19 18 17 21 21 C 1.53780 * 113.61247 * 293.90677 * 14 13 11 22 22 C 1.53784 * 87.08413 * 270.88380 * 21 14 13 23 23 H 1.08997 * 113.61201 * 89.19658 * 22 21 14 24 24 F 1.39900 * 113.61484 * 220.01952 * 22 21 14 25 25 C 1.53783 * 113.61461 * 196.29943 * 14 13 11 26 26 C 1.38732 * 119.88322 * 0.27217 * 7 6 5 27 27 C 1.38143 * 119.94718 * 359.47398 * 26 7 6 28 28 H 0.96699 * 114.00343 * 299.99974 * 1 2 3 29 29 H 1.09001 * 109.47335 * 240.00206 * 2 1 3 30 30 H 1.48504 * 110.00242 * 299.99542 * 3 2 1 31 31 H 1.48499 * 110.00266 * 61.31844 * 3 2 1 32 32 H 1.07997 * 119.97579 * 359.97438 * 5 4 2 33 33 H 1.08003 * 120.02803 * 180.02562 * 6 5 4 34 34 H 1.08998 * 109.47142 * 60.00004 * 9 8 7 35 35 H 1.09001 * 109.47174 * 300.00070 * 9 8 7 36 36 H 1.08997 * 109.47744 * 60.00101 * 10 9 8 37 37 H 1.09001 * 109.46935 * 299.99981 * 10 9 8 38 38 H 0.97007 * 120.00195 * 354.72746 * 13 11 10 39 39 H 1.08005 * 120.00125 * 0.02562 * 16 15 14 40 40 H 1.08001 * 119.99436 * 180.22877 * 17 16 15 41 41 H 1.07998 * 119.99923 * 179.83331 * 18 17 16 42 42 H 1.08001 * 119.99516 * 179.97438 * 19 18 17 43 43 H 1.07994 * 120.00357 * 179.97438 * 20 19 18 44 44 H 1.09000 * 113.61396 * 25.43319 * 21 14 13 45 45 H 1.08998 * 113.61476 * 156.33418 * 21 14 13 46 46 H 1.09000 * 113.61286 * 203.65572 * 25 14 13 47 47 H 1.08996 * 113.61947 * 334.56816 * 25 14 13 48 48 H 1.08001 * 120.02837 * 179.72530 * 26 7 6 49 49 H 1.08004 * 119.97935 * 180.23118 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.6840 -2.0605 1.3972 6 6 2.1439 -2.7140 2.5241 7 6 2.8538 -2.0145 3.4892 8 8 3.3077 -2.6553 4.5983 9 6 4.0315 -1.8721 5.5495 10 6 4.4588 -2.7589 6.7207 11 6 5.2217 -1.9329 7.7241 12 8 5.4059 -0.7512 7.5220 13 7 5.7044 -2.5084 8.8430 14 6 6.5434 -1.7346 9.7614 15 6 5.8027 -0.5938 10.4104 16 6 6.5057 0.4380 11.0039 17 6 5.8262 1.4863 11.5957 18 6 4.4440 1.4988 11.6012 19 6 3.7411 0.4644 11.0123 20 6 4.4205 -0.5820 10.4171 21 6 7.8994 -1.3267 9.1616 22 6 8.4487 -2.6592 9.6979 23 1 8.3466 -3.4874 8.9967 24 9 9.7361 -2.5587 10.2362 25 6 7.3309 -2.6032 10.7566 26 6 3.0952 -0.6585 3.3224 27 6 2.6379 -0.0107 2.1913 28 1 -0.3934 0.4417 0.7650 29 1 1.7924 -0.5138 -0.8900 30 1 1.5615 2.4679 -1.2086 31 1 1.5878 2.4586 1.2242 32 1 1.1310 -2.6045 0.6460 33 1 1.9508 -3.7687 2.6537 34 1 3.3954 -1.0666 5.9163 35 1 4.9159 -1.4485 5.0735 36 1 5.0951 -3.5641 6.3537 37 1 3.5746 -3.1829 7.1968 38 1 5.4963 -3.4351 9.0404 39 1 7.5857 0.4268 11.0022 40 1 6.3755 2.2943 12.0562 41 1 3.9132 2.3166 12.0660 42 1 2.6612 0.4739 11.0170 43 1 3.8714 -1.3904 9.9574 44 1 7.8940 -1.2630 8.0735 45 1 8.3406 -0.4501 9.6358 46 1 7.6171 -2.0748 11.6660 47 1 6.8670 -3.5693 10.9553 48 1 3.6438 -0.1107 4.0743 49 1 2.8287 1.0441 2.0592 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12905100_4549602.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:40:53 Heat of formation + Delta-G solvation = -60.015051 kcal Electronic energy + Delta-G solvation = -32947.718110 eV Core-core repulsion = 28336.344882 eV Total energy + Delta-G solvation = -4611.373227 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 372.157 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -48.61888 -41.99732 -41.28289 -39.95169 -39.19120 -38.56160 -37.30089 -34.44571 -33.23767 -32.09857 -31.89334 -31.75705 -31.34249 -27.21085 -26.85456 -26.09949 -25.23778 -23.72643 -23.42737 -22.57338 -22.23980 -21.54582 -20.36463 -19.55176 -18.62058 -18.43309 -17.78687 -17.42999 -17.35764 -17.20104 -16.89275 -16.60854 -16.39772 -16.18469 -16.00870 -15.80747 -15.73638 -15.62331 -15.29516 -14.77849 -14.72057 -14.45610 -14.37842 -14.30092 -14.21060 -13.92484 -13.80703 -13.53819 -13.49915 -13.34878 -12.87457 -12.82181 -12.60415 -12.29703 -12.28876 -12.07662 -11.96262 -11.79173 -11.68052 -11.59665 -11.43728 -11.03204 -10.60347 -10.28144 -10.05014 -9.86765 -9.62325 -9.23651 -4.94526 0.26870 0.29629 0.35766 0.45292 1.30460 1.51535 1.56720 1.61761 1.92492 2.38886 2.63848 2.72263 3.15739 3.23158 3.42548 3.43294 3.50812 3.58576 3.70308 3.80569 3.81728 3.84522 3.90752 3.94402 4.04148 4.06196 4.17079 4.21822 4.25349 4.33748 4.44257 4.49879 4.55426 4.56860 4.58764 4.65408 4.67764 4.68534 4.71747 4.78737 4.81628 4.96581 5.00365 5.03006 5.12791 5.17080 5.27630 5.34619 5.48361 5.51117 5.58179 5.66513 5.71015 6.04891 6.30909 6.42769 6.47929 7.15880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.548 6.548 2 C -0.074 4.074 3 Si 0.758 3.242 4 C -0.158 4.158 5 C -0.058 4.058 6 C -0.158 4.158 7 C 0.125 3.875 8 O -0.320 6.320 9 C 0.073 3.927 10 C -0.132 4.132 11 C 0.522 3.478 12 O -0.560 6.560 13 N -0.699 5.699 14 C 0.198 3.802 15 C -0.077 4.077 16 C -0.125 4.125 17 C -0.128 4.128 18 C -0.133 4.133 19 C -0.132 4.132 20 C -0.112 4.112 21 C -0.162 4.162 22 C 0.067 3.933 23 H 0.133 0.867 24 F -0.220 7.220 25 C -0.140 4.140 26 C -0.210 4.210 27 C -0.082 4.082 28 H 0.385 0.615 29 H 0.127 0.873 30 H -0.302 1.302 31 H -0.286 1.286 32 H 0.141 0.859 33 H 0.143 0.857 34 H 0.062 0.938 35 H 0.067 0.933 36 H 0.130 0.870 37 H 0.127 0.873 38 H 0.424 0.576 39 H 0.132 0.868 40 H 0.137 0.863 41 H 0.134 0.866 42 H 0.131 0.869 43 H 0.123 0.877 44 H 0.077 0.923 45 H 0.100 0.900 46 H 0.107 0.893 47 H 0.116 0.884 48 H 0.138 0.862 49 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.141 -4.452 2.723 5.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.356 6.356 2 C -0.183 4.183 3 Si 0.664 3.336 4 C -0.159 4.159 5 C -0.076 4.076 6 C -0.177 4.177 7 C 0.080 3.920 8 O -0.234 6.234 9 C -0.002 4.002 10 C -0.172 4.172 11 C 0.310 3.690 12 O -0.438 6.438 13 N -0.353 5.353 14 C 0.110 3.890 15 C -0.079 4.079 16 C -0.143 4.143 17 C -0.146 4.146 18 C -0.151 4.151 19 C -0.150 4.150 20 C -0.130 4.130 21 C -0.201 4.201 22 C 0.031 3.969 23 H 0.151 0.849 24 F -0.201 7.201 25 C -0.178 4.178 26 C -0.229 4.229 27 C -0.100 4.100 28 H 0.234 0.766 29 H 0.144 0.856 30 H -0.230 1.230 31 H -0.213 1.213 32 H 0.159 0.841 33 H 0.161 0.839 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.148 0.852 37 H 0.145 0.855 38 H 0.263 0.737 39 H 0.149 0.851 40 H 0.154 0.846 41 H 0.152 0.848 42 H 0.149 0.851 43 H 0.141 0.859 44 H 0.095 0.905 45 H 0.119 0.881 46 H 0.126 0.874 47 H 0.135 0.865 48 H 0.156 0.844 49 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 1.188 -3.324 2.099 4.106 hybrid contribution -1.115 0.080 0.671 1.304 sum 0.073 -3.243 2.770 4.266 Atomic orbital electron populations 1.86566 1.18613 1.80304 1.50147 1.25085 0.83291 1.11264 0.98672 0.94121 0.90576 0.72663 0.76197 1.20235 1.02625 0.95185 0.97818 1.20999 0.96532 0.93659 0.96444 1.20686 1.01741 1.01416 0.93839 1.19165 0.94502 0.91233 0.87125 1.85953 1.69218 1.38791 1.29455 1.22444 0.95782 0.93577 0.88429 1.21443 1.03127 0.99149 0.93454 1.20612 0.78620 0.87628 0.82172 1.90791 1.58539 1.17395 1.77025 1.45526 1.51884 1.16236 1.21626 1.19576 0.88284 0.90827 0.90310 1.19750 0.93873 0.95905 0.98339 1.21173 1.00472 0.94058 0.98631 1.21400 0.94793 0.98798 0.99576 1.21446 0.94742 0.99111 0.99800 1.21398 1.00730 0.94577 0.98338 1.21015 0.93889 0.98887 0.99186 1.24067 0.94871 0.98609 1.02522 1.23389 0.76932 0.99777 0.96826 0.84916 1.92799 1.42287 1.97357 1.87668 1.23990 0.94234 1.02125 0.97464 1.21395 1.06575 0.93952 1.00957 1.21020 0.96105 1.00050 0.92791 0.76584 0.85566 1.23025 1.21281 0.84095 0.83925 0.91937 0.91500 0.85185 0.85534 0.73668 0.85067 0.84557 0.84781 0.85063 0.85887 0.90466 0.88125 0.87426 0.86527 0.84431 0.84224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -1.78 12.83 -148.98 -1.91 -3.69 16 2 C -0.07 -0.02 2.80 71.24 0.20 0.18 16 3 Si 0.76 -0.40 29.88 68.60 2.05 1.65 16 4 C -0.16 -0.20 5.35 -19.85 -0.11 -0.30 16 5 C -0.06 -0.09 9.68 22.25 0.22 0.13 16 6 C -0.16 -0.34 9.99 22.37 0.22 -0.12 16 7 C 0.13 0.41 6.69 22.51 0.15 0.56 16 8 O -0.32 -0.59 10.14 -92.36 -0.94 -1.52 16 9 C 0.07 -0.08 4.03 71.98 0.29 0.21 16 10 C -0.13 0.93 6.07 29.85 0.18 1.11 16 11 C 0.52 -1.35 6.41 87.66 0.56 -0.79 16 12 O -0.56 -3.64 14.48 -3.05 -0.04 -3.68 16 13 N -0.70 5.01 4.29 -423.92 -1.82 3.19 16 14 C 0.20 -0.63 0.92 3.38 0.00 -0.63 16 15 C -0.08 -0.14 4.51 -19.87 -0.09 -0.23 16 16 C -0.13 -0.32 8.94 22.27 0.20 -0.12 16 17 C -0.13 -0.34 10.05 22.27 0.22 -0.11 16 18 C -0.13 -0.37 10.05 22.27 0.22 -0.15 16 19 C -0.13 -0.40 10.05 22.27 0.22 -0.17 16 20 C -0.11 -0.28 8.65 22.27 0.19 -0.09 16 21 C -0.16 0.16 6.72 31.12 0.21 0.36 16 22 C 0.07 -0.27 5.58 31.22 0.17 -0.09 16 23 H 0.13 -1.13 8.14 -2.39 -0.02 -1.15 16 24 F -0.22 -0.63 17.41 44.97 0.78 0.16 16 25 C -0.14 0.90 7.21 31.22 0.23 1.13 16 26 C -0.21 -0.51 9.04 22.37 0.20 -0.31 16 27 C -0.08 -0.10 8.66 22.25 0.19 0.09 16 28 H 0.39 -0.76 8.70 -74.06 -0.64 -1.40 16 29 H 0.13 -0.22 7.96 -2.39 -0.02 -0.24 16 30 H -0.30 -2.12 7.11 99.48 0.71 -1.41 16 31 H -0.29 -1.01 7.00 99.48 0.70 -0.31 16 32 H 0.14 -0.09 8.06 -2.91 -0.02 -0.11 16 33 H 0.14 -0.07 8.06 -2.91 -0.02 -0.10 16 34 H 0.06 0.05 7.61 -2.39 -0.02 0.04 16 35 H 0.07 0.01 7.63 -2.39 -0.02 0.00 16 36 H 0.13 -1.43 8.14 -2.39 -0.02 -1.45 16 37 H 0.13 -1.35 8.14 -2.39 -0.02 -1.37 16 38 H 0.42 -6.01 8.66 -92.70 -0.80 -6.81 16 39 H 0.13 -0.01 6.29 -2.91 -0.02 -0.03 16 40 H 0.14 -0.13 8.06 -2.91 -0.02 -0.16 16 41 H 0.13 -0.09 8.06 -2.91 -0.02 -0.12 16 42 H 0.13 -0.03 8.06 -2.91 -0.02 -0.05 16 43 H 0.12 -0.04 6.89 -2.91 -0.02 -0.06 16 44 H 0.08 0.12 7.57 -2.39 -0.02 0.10 16 45 H 0.10 0.04 6.02 -2.39 -0.01 0.02 16 46 H 0.11 -0.52 7.93 -2.39 -0.02 -0.54 16 47 H 0.12 -1.33 8.09 -2.39 -0.02 -1.35 16 48 H 0.14 0.13 6.30 -2.91 -0.02 0.11 16 49 H 0.14 -0.26 4.83 -2.91 -0.01 -0.27 16 Total: 0.00 -21.29 403.74 1.40 -19.89 By element: Atomic # 1 Polarization: -16.24 SS G_CDS: -0.42 Total: -16.65 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: 3.70 Total: 0.67 kcal Atomic # 7 Polarization: 5.01 SS G_CDS: -1.82 Total: 3.19 kcal Atomic # 8 Polarization: -6.00 SS G_CDS: -2.89 Total: -8.90 kcal Atomic # 9 Polarization: -0.63 SS G_CDS: 0.78 Total: 0.16 kcal Atomic # 14 Polarization: -0.40 SS G_CDS: 2.05 Total: 1.65 kcal Total: -21.29 1.40 -19.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12905100_4549602.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.127 kcal (2) G-P(sol) polarization free energy of solvation -21.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds