Wall clock time and date at job start Sat Mar 6 2021 20:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35892 * 117.00212 * 2 1 4 4 C 1.38611 * 120.03282 * 180.27585 * 3 2 1 5 5 C 1.38656 * 119.89603 * 180.20686 * 4 3 2 6 6 O 1.35898 * 120.02793 * 179.79562 * 5 4 3 7 7 C 1.42896 * 116.99905 * 359.71662 * 6 5 4 8 8 C 1.50701 * 109.46791 * 180.02562 * 7 6 5 9 9 O 1.21279 * 120.00436 * 0.02562 * 8 7 6 10 10 N 1.34784 * 119.99645 * 180.02562 * 8 7 6 11 11 C 1.46509 * 119.99520 * 175.05426 * 10 8 7 12 12 C 1.50695 * 112.84754 * 291.19208 * 11 10 8 13 13 C 1.38236 * 120.00439 * 346.63565 * 12 11 10 14 14 C 1.38236 * 120.00340 * 179.78335 * 13 12 11 15 15 C 1.38240 * 119.99746 * 0.47012 * 14 13 12 16 16 C 1.38237 * 119.99749 * 359.76495 * 15 14 13 17 17 C 1.38231 * 120.00062 * 166.91037 * 12 11 10 18 18 C 1.53781 * 113.60984 * 159.88858 * 11 10 8 19 19 C 1.53781 * 87.08011 * 270.88207 * 18 11 10 20 20 H 1.08999 * 113.61336 * 89.11911 * 19 18 11 21 21 F 1.39899 * 113.61163 * 220.02093 * 19 18 11 22 22 C 1.53780 * 113.61606 * 62.39181 * 11 10 8 23 23 C 1.38752 * 119.94233 * 359.51556 * 5 4 3 24 24 C 1.50698 * 119.97058 * 180.23113 * 23 5 4 25 25 O 1.42895 * 109.47396 * 284.99743 * 24 23 5 26 26 Si 1.86306 * 109.46799 * 164.99635 * 24 23 5 27 27 C 1.38201 * 120.05306 * 0.25020 * 23 5 4 28 28 C 1.38150 * 120.11245 * 359.97438 * 27 23 5 29 29 H 1.08998 * 109.47188 * 300.00400 * 1 2 3 30 30 H 1.08993 * 109.46986 * 60.00249 * 1 2 3 31 31 H 1.09000 * 109.47155 * 180.02562 * 1 2 3 32 32 H 1.08010 * 120.05242 * 359.97438 * 4 3 2 33 33 H 1.08997 * 109.47033 * 60.00495 * 7 6 5 34 34 H 1.08997 * 109.47345 * 300.00374 * 7 6 5 35 35 H 0.96989 * 120.00025 * 355.05095 * 10 8 7 36 36 H 1.08005 * 119.99486 * 0.02562 * 13 12 11 37 37 H 1.07999 * 120.00295 * 180.25085 * 14 13 12 38 38 H 1.07993 * 119.99821 * 179.78673 * 15 14 13 39 39 H 1.08004 * 119.99506 * 180.02562 * 16 15 14 40 40 H 1.08007 * 119.99893 * 359.97438 * 17 12 11 41 41 H 1.09002 * 113.61683 * 25.43203 * 18 11 10 42 42 H 1.09000 * 113.61028 * 156.33312 * 18 11 10 43 43 H 1.09000 * 113.61504 * 203.66312 * 22 11 10 44 44 H 1.09002 * 113.61618 * 334.56248 * 22 11 10 45 45 H 1.09000 * 109.47125 * 45.00622 * 24 23 5 46 46 H 0.96698 * 113.99968 * 300.00864 * 25 24 23 47 47 H 1.48498 * 109.99866 * 179.97438 * 26 24 23 48 48 H 1.48496 * 110.00246 * 301.32303 * 26 24 23 49 49 H 1.07998 * 119.93952 * 180.02562 * 27 23 5 50 50 H 1.07995 * 119.97694 * 180.02562 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4301 1.2841 -0.0058 5 6 4.0567 2.5210 -0.0014 6 8 5.4136 2.5959 -0.0029 7 6 6.1316 1.3604 -0.0027 8 6 7.6124 1.6401 -0.0038 9 8 8.0135 2.7846 -0.0042 10 7 8.4912 0.6181 -0.0043 11 6 9.9272 0.8868 -0.1148 12 6 10.3212 1.4140 -1.4704 13 6 9.4332 1.3367 -2.5270 14 6 9.7930 1.8244 -3.7694 15 6 11.0445 2.3804 -3.9577 16 6 11.9343 2.4532 -2.9023 17 6 11.5728 1.9696 -1.6588 18 6 10.8103 -0.2715 0.3785 19 6 10.7425 0.3744 1.7724 20 1 9.8971 0.0344 2.3705 21 9 11.9548 0.3318 2.4693 22 6 10.4914 1.7110 1.0545 23 6 3.2972 3.6821 -0.0015 24 6 3.9775 5.0268 -0.0020 25 8 4.5041 5.2948 1.2991 26 14 2.7438 6.3467 -0.4567 27 6 1.9172 3.6065 -0.0006 28 6 1.2906 2.3753 -0.0003 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 4.0197 0.3791 -0.0099 33 1 5.8690 0.7875 -0.8920 34 1 5.8708 0.7888 0.8879 35 1 8.1729 -0.2952 0.0685 36 1 8.4567 0.8989 -2.3807 37 1 9.0977 1.7677 -4.5939 38 1 11.3269 2.7582 -4.9292 39 1 12.9120 2.8881 -3.0494 40 1 12.2682 2.0263 -0.8344 41 1 10.3237 -1.2453 0.3243 42 1 11.8108 -0.2725 -0.0541 43 1 11.4047 2.2520 0.8068 44 1 9.7472 2.3376 1.5462 45 1 4.7896 5.0228 -0.7290 46 1 3.8357 5.3133 1.9977 47 1 3.4022 7.6777 -0.4601 48 1 2.1652 6.0621 -1.7943 49 1 1.3278 4.5114 -0.0011 50 1 0.2121 2.3187 0.0000 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12905100_4974312.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:41:43 Heat of formation + Delta-G solvation = -87.725408 kcal Electronic energy + Delta-G solvation = -36452.397394 eV Core-core repulsion = 31521.140364 eV Total energy + Delta-G solvation = -4931.257030 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 388.156 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -48.65723 -42.15442 -41.64741 -40.32022 -39.62707 -38.68406 -38.14796 -36.91907 -34.57333 -32.29593 -32.06443 -31.83186 -31.36651 -29.47548 -28.34984 -27.19182 -26.12206 -25.91189 -23.93262 -23.54129 -22.63968 -22.48913 -21.88927 -20.49007 -19.91225 -18.71479 -18.63369 -18.08709 -17.75206 -17.51103 -17.37178 -17.22829 -16.83285 -16.69046 -16.61737 -16.51122 -16.01156 -15.92133 -15.87314 -15.64492 -15.32759 -15.14810 -15.11841 -14.58901 -14.47262 -14.41278 -14.07299 -13.98382 -13.88089 -13.58014 -13.55004 -13.35146 -13.32187 -13.15357 -12.66521 -12.48776 -12.35194 -12.28349 -12.03936 -12.00457 -11.87725 -11.76215 -11.63152 -11.49560 -11.00266 -10.38410 -10.36740 -9.92398 -9.70480 -9.69245 -9.10481 -5.05309 0.20353 0.29676 0.29835 0.39511 1.28887 1.30561 1.38741 1.62980 1.97262 2.23231 2.48105 2.57304 2.66469 3.11307 3.18858 3.35974 3.38735 3.56080 3.59670 3.73043 3.77229 3.81955 3.88162 3.96594 3.98840 3.99410 4.08005 4.12112 4.15861 4.17820 4.34128 4.39100 4.43711 4.45163 4.46507 4.52272 4.54487 4.60475 4.61966 4.65691 4.79957 4.80601 4.94455 4.96596 5.01489 5.07112 5.23185 5.26970 5.27834 5.45674 5.47207 5.52906 5.59691 5.99344 6.10363 6.32808 6.39285 6.85057 7.05320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.330 6.330 3 C 0.163 3.837 4 C -0.253 4.253 5 C 0.174 3.826 6 O -0.304 6.304 7 C 0.034 3.966 8 C 0.518 3.482 9 O -0.546 6.546 10 N -0.694 5.694 11 C 0.199 3.801 12 C -0.084 4.084 13 C -0.117 4.117 14 C -0.132 4.132 15 C -0.131 4.131 16 C -0.126 4.126 17 C -0.123 4.123 18 C -0.135 4.135 19 C 0.067 3.933 20 H 0.130 0.870 21 F -0.219 7.219 22 C -0.164 4.164 23 C -0.203 4.203 24 C -0.066 4.066 25 O -0.557 6.557 26 Si 0.792 3.208 27 C -0.032 4.032 28 C -0.237 4.237 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.115 0.885 32 H 0.153 0.847 33 H 0.121 0.879 34 H 0.124 0.876 35 H 0.426 0.574 36 H 0.123 0.877 37 H 0.133 0.867 38 H 0.137 0.863 39 H 0.140 0.860 40 H 0.133 0.867 41 H 0.120 0.880 42 H 0.112 0.888 43 H 0.100 0.900 44 H 0.072 0.928 45 H 0.080 0.920 46 H 0.390 0.610 47 H -0.304 1.304 48 H -0.280 1.280 49 H 0.165 0.835 50 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.528 -7.001 0.364 10.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.243 6.243 3 C 0.117 3.883 4 C -0.272 4.272 5 C 0.128 3.872 6 O -0.216 6.216 7 C -0.044 4.044 8 C 0.304 3.696 9 O -0.421 6.421 10 N -0.350 5.350 11 C 0.112 3.888 12 C -0.085 4.085 13 C -0.136 4.136 14 C -0.150 4.150 15 C -0.149 4.149 16 C -0.144 4.144 17 C -0.141 4.141 18 C -0.173 4.173 19 C 0.031 3.969 20 H 0.148 0.852 21 F -0.199 7.199 22 C -0.203 4.203 23 C -0.204 4.204 24 C -0.175 4.175 25 O -0.365 6.365 26 Si 0.697 3.303 27 C -0.049 4.049 28 C -0.256 4.256 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.133 0.867 32 H 0.170 0.830 33 H 0.139 0.861 34 H 0.141 0.859 35 H 0.266 0.734 36 H 0.141 0.859 37 H 0.151 0.849 38 H 0.155 0.845 39 H 0.157 0.843 40 H 0.151 0.849 41 H 0.139 0.861 42 H 0.130 0.870 43 H 0.118 0.882 44 H 0.091 0.909 45 H 0.097 0.903 46 H 0.240 0.760 47 H -0.233 1.233 48 H -0.206 1.206 49 H 0.182 0.818 50 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -6.682 -5.592 -0.510 8.728 hybrid contribution 0.518 -0.577 -0.304 0.833 sum -6.163 -6.169 -0.814 8.758 Atomic orbital electron populations 1.23406 0.75962 1.05687 1.02764 1.86053 1.23790 1.26579 1.87927 1.18883 0.91638 0.85060 0.92707 1.20542 0.93492 0.97325 1.15854 1.18598 0.81668 0.93256 0.93661 1.86222 1.15609 1.31561 1.88185 1.22736 0.88372 0.86580 1.06705 1.20412 0.88231 0.85197 0.75805 1.90811 1.80403 1.22910 1.47971 1.45307 1.04141 1.10217 1.75324 1.19578 0.80693 0.97587 0.90955 1.19798 0.94687 0.99604 0.94386 1.21056 0.99400 1.00199 0.92901 1.21416 0.97208 0.98674 0.97692 1.21474 0.94078 0.99384 0.99977 1.21428 1.00591 0.99491 0.92874 1.21160 0.96203 0.98718 0.98057 1.23941 1.01508 0.98518 0.93306 1.23310 0.84034 0.97510 0.91998 0.85202 1.92799 1.48246 1.97137 1.81759 1.24065 1.02504 0.97473 0.96240 1.19733 0.93823 0.93998 1.12875 1.25094 1.04253 0.99677 0.88464 1.86542 1.39259 1.93712 1.16952 0.94160 0.80407 0.73161 0.82618 1.20855 0.91534 0.98608 0.93918 1.21447 1.01795 0.91170 1.11184 0.91047 0.91365 0.86651 0.82958 0.86144 0.85857 0.73442 0.85915 0.84935 0.84521 0.84264 0.84926 0.86136 0.86960 0.88154 0.90945 0.90266 0.76032 1.23297 1.20647 0.81764 0.82163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.12 9.81 113.37 1.11 1.00 16 2 O -0.33 0.04 10.49 -92.34 -0.97 -0.93 16 3 C 0.16 0.13 6.68 22.49 0.15 0.28 16 4 C -0.25 -0.38 8.97 22.46 0.20 -0.18 16 5 C 0.17 0.90 6.66 22.49 0.15 1.05 16 6 O -0.30 -2.43 8.99 -73.36 -0.66 -3.09 16 7 C 0.03 -0.04 5.22 71.24 0.37 0.33 16 8 C 0.52 1.76 6.40 87.66 0.56 2.32 16 9 O -0.55 -8.14 14.91 16.01 0.24 -7.91 16 10 N -0.69 2.60 4.24 -423.91 -1.80 0.80 16 11 C 0.20 -0.04 0.94 3.38 0.00 -0.04 16 12 C -0.08 -0.35 4.89 -19.87 -0.10 -0.45 16 13 C -0.12 -0.56 8.98 22.27 0.20 -0.36 16 14 C -0.13 -0.63 10.05 22.27 0.22 -0.41 16 15 C -0.13 -0.56 10.05 22.27 0.22 -0.33 16 16 C -0.13 -0.51 10.05 22.27 0.22 -0.29 16 17 C -0.12 -0.54 8.71 22.27 0.19 -0.35 16 18 C -0.13 0.64 7.19 31.12 0.22 0.86 16 19 C 0.07 -0.08 5.58 31.12 0.17 0.10 16 20 H 0.13 -0.68 8.14 -2.39 -0.02 -0.70 16 21 F -0.22 -1.10 17.41 44.97 0.78 -0.31 16 22 C -0.16 -0.53 6.62 31.12 0.21 -0.33 16 23 C -0.20 -0.79 5.27 -19.75 -0.10 -0.90 16 24 C -0.07 -0.41 2.37 71.24 0.17 -0.24 16 25 O -0.56 -4.27 12.88 -148.98 -1.92 -6.19 16 26 Si 0.79 0.66 29.91 68.60 2.05 2.71 16 27 C -0.03 0.05 8.65 22.24 0.19 0.25 16 28 C -0.24 0.55 9.04 22.38 0.20 0.75 16 29 H 0.07 -0.68 7.66 -2.39 -0.02 -0.70 16 30 H 0.07 -0.62 7.66 -2.39 -0.02 -0.63 16 31 H 0.12 -1.16 8.14 -2.39 -0.02 -1.18 16 32 H 0.15 -0.46 6.30 -2.91 -0.02 -0.48 16 33 H 0.12 -0.82 7.65 -2.39 -0.02 -0.83 16 34 H 0.12 -0.88 7.67 -2.39 -0.02 -0.90 16 35 H 0.43 -5.15 8.69 -92.72 -0.81 -5.95 16 36 H 0.12 0.24 6.73 -2.91 -0.02 0.22 16 37 H 0.13 0.19 8.06 -2.91 -0.02 0.16 16 38 H 0.14 0.05 8.06 -2.91 -0.02 0.03 16 39 H 0.14 0.02 8.06 -2.91 -0.02 -0.01 16 40 H 0.13 0.22 6.55 -2.91 -0.02 0.20 16 41 H 0.12 -1.26 8.10 -2.39 -0.02 -1.28 16 42 H 0.11 -0.43 7.79 -2.39 -0.02 -0.45 16 43 H 0.10 0.42 6.22 -2.39 -0.01 0.40 16 44 H 0.07 0.59 6.95 -2.39 -0.02 0.57 16 45 H 0.08 0.96 7.82 -2.39 -0.02 0.94 16 46 H 0.39 -0.89 8.70 -74.06 -0.64 -1.53 16 47 H -0.30 -2.77 7.11 99.48 0.71 -2.07 16 48 H -0.28 -1.26 7.11 99.48 0.71 -0.55 16 49 H 0.17 -1.31 5.12 -2.91 -0.01 -1.33 16 50 H 0.16 -1.26 6.29 -2.91 -0.02 -1.28 16 Total: 0.00 -31.10 411.54 1.91 -29.19 By element: Atomic # 1 Polarization: -16.95 SS G_CDS: -0.40 Total: -17.34 kcal Atomic # 6 Polarization: -1.51 SS G_CDS: 4.58 Total: 3.07 kcal Atomic # 7 Polarization: 2.60 SS G_CDS: -1.80 Total: 0.80 kcal Atomic # 8 Polarization: -14.81 SS G_CDS: -3.31 Total: -18.12 kcal Atomic # 9 Polarization: -1.10 SS G_CDS: 0.78 Total: -0.31 kcal Atomic # 14 Polarization: 0.66 SS G_CDS: 2.05 Total: 2.71 kcal Total: -31.10 1.91 -29.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12905100_4974312.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.535 kcal (2) G-P(sol) polarization free energy of solvation -31.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds