Wall clock time and date at job start Sat Mar 6 2021 20:41:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35994 * 116.99705 * 2 1 4 4 C 1.39147 * 120.07024 * 180.02562 * 3 2 1 5 5 O 1.35993 * 120.07597 * 359.97438 * 4 3 2 6 6 C 1.42906 * 117.00356 * 180.02562 * 5 4 3 7 7 C 1.50698 * 109.47340 * 179.97438 * 6 5 4 8 8 O 1.21283 * 120.00031 * 0.02562 * 7 6 5 9 9 N 1.34776 * 120.00025 * 179.97438 * 7 6 5 10 10 C 1.46503 * 119.99764 * 185.23500 * 9 7 6 11 11 C 1.50696 * 112.85002 * 54.42061 * 10 9 7 12 12 C 1.38237 * 119.99930 * 215.65985 * 11 10 9 13 13 C 1.38230 * 119.99984 * 179.78780 * 12 11 10 14 14 C 1.38235 * 120.00065 * 0.44147 * 13 12 11 15 15 C 1.38233 * 119.99700 * 359.81055 * 14 13 12 16 16 C 1.38226 * 120.00161 * 359.97438 * 15 14 13 17 17 C 1.54051 * 113.68904 * 283.13969 * 10 9 7 18 18 C 1.53775 * 86.98786 * 270.87904 * 17 10 9 19 19 H 1.08994 * 113.61462 * 89.16451 * 18 17 10 20 20 F 1.39902 * 113.61229 * 219.98003 * 18 17 10 21 21 C 1.53783 * 87.17415 * 334.57049 * 18 17 10 22 22 C 1.38570 * 119.85232 * 180.25474 * 4 3 2 23 23 C 1.38234 * 119.99967 * 359.46363 * 22 4 3 24 24 C 1.38261 * 120.14716 * 0.51460 * 23 22 4 25 25 C 1.50691 * 119.92888 * 179.74276 * 24 23 22 26 26 O 1.42901 * 109.47391 * 245.02262 * 25 24 23 27 27 Si 1.86300 * 109.47181 * 5.02057 * 25 24 23 28 28 C 1.38245 * 120.14228 * 359.76661 * 24 23 22 29 29 H 1.08994 * 109.46903 * 299.99465 * 1 2 3 30 30 H 1.09000 * 109.47543 * 60.00142 * 1 2 3 31 31 H 1.09012 * 109.46901 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46769 * 60.00022 * 6 5 4 33 33 H 1.09003 * 109.46992 * 300.00319 * 6 5 4 34 34 H 0.96999 * 119.99837 * 5.23908 * 9 7 6 35 35 H 1.08006 * 120.00067 * 359.97438 * 12 11 10 36 36 H 1.08004 * 119.99934 * 180.26936 * 13 12 11 37 37 H 1.08008 * 119.99989 * 179.83599 * 14 13 12 38 38 H 1.08002 * 119.99730 * 179.97438 * 15 14 13 39 39 H 1.08005 * 120.00092 * 179.97438 * 16 15 14 40 40 H 1.09005 * 113.60966 * 156.36830 * 17 10 9 41 41 H 1.09001 * 113.69702 * 25.40013 * 17 10 9 42 42 H 1.09001 * 113.61339 * 140.02142 * 21 18 17 43 43 H 1.09004 * 113.61639 * 270.92824 * 21 18 17 44 44 H 1.07999 * 119.99929 * 179.72283 * 22 4 3 45 45 H 1.08001 * 119.92969 * 180.25285 * 23 22 4 46 46 H 1.08999 * 109.47308 * 125.02322 * 25 24 23 47 47 H 0.96700 * 114.00664 * 180.02562 * 26 25 24 48 48 H 1.48498 * 109.99837 * 299.99866 * 27 25 24 49 49 H 1.48498 * 109.99977 * 61.31784 * 27 25 24 50 50 H 1.08004 * 119.99885 * 180.02562 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 3.4359 1.2863 -0.0005 5 8 4.1795 0.1478 -0.0005 6 6 5.6003 0.3007 -0.0005 7 6 6.2519 -1.0581 0.0001 8 8 5.5671 -2.0590 0.0000 9 7 7.5958 -1.1610 -0.0003 10 6 8.2295 -2.4769 -0.1155 11 6 7.7617 -3.2481 -1.3226 12 6 7.6165 -4.6210 -1.2521 13 6 7.1832 -5.3279 -2.3581 14 6 6.9037 -4.6631 -3.5374 15 6 7.0539 -3.2908 -3.6095 16 6 7.4829 -2.5834 -2.5022 17 6 8.1990 -3.2949 1.1896 18 6 9.5351 -2.6225 1.5468 19 1 9.4203 -1.6836 2.0884 20 9 10.4546 -3.4880 2.1489 21 6 9.7594 -2.4391 0.0365 22 6 4.0602 2.5234 0.0048 23 6 3.3029 3.6798 -0.0005 24 6 1.9223 3.6058 -0.0005 25 6 1.1015 4.8695 -0.0005 26 8 0.3650 4.9592 1.2208 27 14 2.2307 6.3433 -0.1543 28 6 1.2931 2.3748 0.0000 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0278 0.0005 32 1 5.9065 0.8505 0.8895 33 1 5.9066 0.8506 -0.8905 34 1 8.1432 -0.3640 0.0757 35 1 7.8388 -5.1410 -0.3319 36 1 7.0656 -6.4001 -2.3017 37 1 6.5677 -5.2158 -4.4024 38 1 6.8359 -2.7714 -4.5310 39 1 7.6007 -1.5113 -2.5586 40 1 8.2797 -4.3705 1.0326 41 1 7.3814 -3.0238 1.8575 42 1 10.2006 -1.4775 -0.2258 43 1 10.2659 -3.2812 -0.4351 44 1 5.1385 2.5841 0.0089 45 1 3.7907 4.6434 -0.0005 46 1 0.4090 4.8530 -0.8420 47 1 -0.1874 5.7499 1.2899 48 1 3.1798 6.3772 0.9873 49 1 2.9791 6.2783 -1.4352 50 1 0.2145 2.3196 -0.0003 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12905100_60476.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:41:50 Heat of formation + Delta-G solvation = -82.191876 kcal Electronic energy + Delta-G solvation = -36069.504311 eV Core-core repulsion = 31138.487232 eV Total energy + Delta-G solvation = -4931.017078 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 388.156 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -48.64843 -42.12366 -41.72333 -40.20025 -39.32340 -38.87439 -38.46642 -37.04023 -34.49852 -32.28402 -31.99322 -31.85449 -31.60176 -29.63330 -28.51602 -27.24212 -26.29570 -25.77024 -23.86697 -23.51865 -22.80126 -22.49108 -21.85333 -20.49025 -19.81726 -18.64295 -18.55994 -18.43918 -18.22290 -17.56800 -17.54611 -17.42564 -16.97114 -16.67783 -16.61916 -16.32170 -16.10312 -15.93177 -15.70510 -15.56761 -15.53538 -15.33324 -15.17061 -14.50132 -14.41583 -14.22138 -14.11600 -14.04005 -13.84126 -13.64372 -13.59093 -13.51906 -13.36208 -12.83851 -12.72742 -12.45474 -12.32833 -12.27994 -12.25564 -12.09838 -11.97746 -11.85198 -11.69397 -11.45811 -11.07766 -10.36564 -10.30930 -9.91645 -9.89864 -9.66658 -9.04328 -4.90144 0.03104 0.09910 0.32024 0.42297 1.29748 1.31850 1.40151 1.68472 1.98491 2.20549 2.38524 2.40613 2.71145 3.10954 3.19084 3.33328 3.38053 3.42855 3.48293 3.62909 3.68951 3.78588 3.84292 3.89565 3.95301 3.99604 4.01873 4.09380 4.12899 4.15081 4.17332 4.25226 4.27558 4.45687 4.46183 4.48180 4.53543 4.56670 4.62337 4.62864 4.65292 4.79307 4.84464 4.92250 4.96544 4.99081 5.09078 5.22326 5.29232 5.42093 5.47337 5.54972 5.59526 5.85010 6.02179 6.31030 6.42561 6.91284 7.07689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.332 6.332 3 C 0.084 3.916 4 C 0.087 3.913 5 O -0.308 6.308 6 C 0.032 3.968 7 C 0.517 3.483 8 O -0.545 6.545 9 N -0.692 5.692 10 C 0.199 3.801 11 C -0.077 4.077 12 C -0.125 4.125 13 C -0.129 4.129 14 C -0.132 4.132 15 C -0.131 4.131 16 C -0.116 4.116 17 C -0.172 4.172 18 C 0.068 3.932 19 H 0.135 0.865 20 F -0.220 7.220 21 C -0.136 4.136 22 C -0.160 4.160 23 C -0.133 4.133 24 C -0.085 4.085 25 C -0.081 4.081 26 O -0.565 6.565 27 Si 0.777 3.223 28 C -0.148 4.148 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.113 0.887 32 H 0.125 0.875 33 H 0.125 0.875 34 H 0.426 0.574 35 H 0.130 0.870 36 H 0.136 0.864 37 H 0.136 0.864 38 H 0.135 0.865 39 H 0.129 0.871 40 H 0.103 0.897 41 H 0.074 0.926 42 H 0.121 0.879 43 H 0.108 0.892 44 H 0.173 0.827 45 H 0.132 0.868 46 H 0.092 0.908 47 H 0.404 0.596 48 H -0.291 1.291 49 H -0.284 1.284 50 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.691 9.119 -2.233 9.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.246 6.246 3 C 0.038 3.962 4 C 0.041 3.959 5 O -0.222 6.222 6 C -0.046 4.046 7 C 0.303 3.697 8 O -0.420 6.420 9 N -0.348 5.348 10 C 0.112 3.888 11 C -0.078 4.078 12 C -0.144 4.144 13 C -0.147 4.147 14 C -0.150 4.150 15 C -0.149 4.149 16 C -0.134 4.134 17 C -0.210 4.210 18 C 0.032 3.968 19 H 0.153 0.847 20 F -0.200 7.200 21 C -0.174 4.174 22 C -0.178 4.178 23 C -0.151 4.151 24 C -0.086 4.086 25 C -0.191 4.191 26 O -0.375 6.375 27 Si 0.682 3.318 28 C -0.167 4.167 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.131 0.869 32 H 0.142 0.858 33 H 0.143 0.857 34 H 0.266 0.734 35 H 0.148 0.852 36 H 0.154 0.846 37 H 0.154 0.846 38 H 0.153 0.847 39 H 0.147 0.853 40 H 0.121 0.879 41 H 0.092 0.908 42 H 0.139 0.861 43 H 0.126 0.874 44 H 0.190 0.810 45 H 0.150 0.850 46 H 0.110 0.890 47 H 0.255 0.745 48 H -0.218 1.218 49 H -0.212 1.212 50 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 1.328 7.716 -2.192 8.131 hybrid contribution -0.188 -0.552 0.039 0.585 sum 1.140 7.164 -2.153 7.567 Atomic orbital electron populations 1.23342 0.76500 1.05429 1.02326 1.86200 1.23308 1.26163 1.88895 1.18645 0.89789 0.85794 1.01970 1.18471 0.88387 0.86221 1.02820 1.86227 1.18132 1.28546 1.89251 1.22784 0.79470 0.95467 1.06831 1.20397 0.82762 0.90697 0.75863 1.90813 1.63716 1.39625 1.47874 1.45336 1.05239 1.08927 1.75339 1.19639 0.93763 0.83397 0.92024 1.19655 0.99983 0.93826 0.94364 1.21270 0.99948 0.94003 0.99141 1.21410 0.99160 1.00922 0.93217 1.21464 0.99911 0.95027 0.98618 1.21415 0.99492 0.94777 0.99230 1.21058 0.99441 1.00266 0.92673 1.24222 0.97996 1.01764 0.97067 1.23318 0.86494 0.93294 0.93656 0.84702 1.92801 1.68888 1.72643 1.85712 1.23917 0.92233 1.06728 0.94532 1.21262 1.02023 0.89455 1.05097 1.20829 0.93272 0.98285 1.02717 1.19485 0.93459 0.94458 1.01154 1.24887 1.01590 1.02134 0.90438 1.86447 1.63815 1.50279 1.36974 0.94257 0.78708 0.82320 0.76471 1.21080 1.00956 0.90093 1.04548 0.91712 0.91299 0.86888 0.85755 0.85727 0.73433 0.85223 0.84639 0.84618 0.84706 0.85266 0.87874 0.90769 0.86055 0.87375 0.81006 0.85039 0.88969 0.74514 1.21848 1.21151 0.83023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.05 9.81 113.37 1.11 1.16 16 2 O -0.33 -4.06 10.28 -79.62 -0.82 -4.88 16 3 C 0.08 0.87 6.70 22.57 0.15 1.02 16 4 C 0.09 0.73 6.70 22.57 0.15 0.89 16 5 O -0.31 -3.11 9.45 -67.05 -0.63 -3.75 16 6 C 0.03 -0.04 5.22 71.24 0.37 0.34 16 7 C 0.52 1.78 7.13 87.66 0.62 2.41 16 8 O -0.55 -8.33 15.51 16.00 0.25 -8.08 16 9 N -0.69 3.00 4.62 -423.50 -1.96 1.04 16 10 C 0.20 -0.14 0.89 3.48 0.00 -0.14 16 11 C -0.08 -0.36 3.95 -19.87 -0.08 -0.44 16 12 C -0.13 -0.78 9.27 22.27 0.21 -0.58 16 13 C -0.13 -0.76 10.05 22.27 0.22 -0.53 16 14 C -0.13 -0.71 10.05 22.27 0.22 -0.48 16 15 C -0.13 -0.66 10.05 22.27 0.22 -0.44 16 16 C -0.12 -0.52 8.93 22.27 0.20 -0.32 16 17 C -0.17 -0.26 6.87 31.21 0.21 -0.05 16 18 C 0.07 -0.18 5.57 31.12 0.17 0.00 16 19 H 0.14 -1.03 8.14 -2.39 -0.02 -1.05 16 20 F -0.22 -0.91 17.41 44.97 0.78 -0.13 16 21 C -0.14 0.71 7.23 31.12 0.22 0.94 16 22 C -0.16 -0.40 9.04 22.35 0.20 -0.19 16 23 C -0.13 -0.52 8.66 22.27 0.19 -0.32 16 24 C -0.09 -0.41 5.38 -19.86 -0.11 -0.52 16 25 C -0.08 0.11 2.79 71.23 0.20 0.31 16 26 O -0.57 0.51 12.81 -148.98 -1.91 -1.40 16 27 Si 0.78 -3.04 29.84 68.60 2.05 -0.99 16 28 C -0.15 -0.95 8.67 22.35 0.19 -0.76 16 29 H 0.06 0.05 7.66 -2.39 -0.02 0.03 16 30 H 0.07 -0.03 7.66 -2.39 -0.02 -0.04 16 31 H 0.11 0.00 8.14 -2.38 -0.02 -0.02 16 32 H 0.12 -0.98 7.65 -2.38 -0.02 -0.99 16 33 H 0.13 -0.97 7.67 -2.39 -0.02 -0.99 16 34 H 0.43 -5.61 8.63 -92.71 -0.80 -6.41 16 35 H 0.13 0.52 5.67 -2.91 -0.02 0.51 16 36 H 0.14 0.29 8.06 -2.91 -0.02 0.27 16 37 H 0.14 0.20 8.06 -2.91 -0.02 0.17 16 38 H 0.14 0.16 8.06 -2.91 -0.02 0.14 16 39 H 0.13 0.05 7.73 -2.91 -0.02 0.03 16 40 H 0.10 0.27 5.67 -2.38 -0.01 0.25 16 41 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 42 H 0.12 -1.35 8.10 -2.39 -0.02 -1.37 16 43 H 0.11 -0.37 8.09 -2.38 -0.02 -0.39 16 44 H 0.17 -1.01 6.30 -2.91 -0.02 -1.03 16 45 H 0.13 0.19 4.85 -2.91 -0.01 0.18 16 46 H 0.09 -0.48 7.96 -2.39 -0.02 -0.50 16 47 H 0.40 -4.69 8.74 -74.06 -0.65 -5.34 16 48 H -0.29 -0.81 7.04 99.48 0.70 -0.11 16 49 H -0.28 -0.28 7.11 99.48 0.71 0.43 16 50 H 0.15 0.44 6.30 -2.91 -0.02 0.43 16 Total: 0.00 -33.44 414.34 2.06 -31.38 By element: Atomic # 1 Polarization: -15.07 SS G_CDS: -0.40 Total: -15.47 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: 4.71 Total: 2.27 kcal Atomic # 7 Polarization: 3.00 SS G_CDS: -1.96 Total: 1.04 kcal Atomic # 8 Polarization: -14.99 SS G_CDS: -3.11 Total: -18.10 kcal Atomic # 9 Polarization: -0.91 SS G_CDS: 0.78 Total: -0.13 kcal Atomic # 14 Polarization: -3.04 SS G_CDS: 2.05 Total: -0.99 kcal Total: -33.44 2.06 -31.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12905100_60476.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.816 kcal (2) G-P(sol) polarization free energy of solvation -33.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds