Wall clock time and date at job start Sat Mar 6 2021 20:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35971 * 116.99629 * 2 1 4 4 C 1.39442 * 120.11743 * 180.02562 * 3 2 1 5 5 O 1.34777 * 133.24757 * 0.02562 * 4 3 2 6 6 C 1.34928 * 110.84641 * 179.97438 * 5 4 3 7 7 C 1.46989 * 125.14008 * 179.97438 * 6 5 4 8 8 O 1.21658 * 119.99761 * 180.02562 * 7 6 5 9 9 N 1.34774 * 120.00281 * 0.02562 * 7 6 5 10 10 C 1.46503 * 119.99890 * 185.01740 * 9 7 6 11 11 C 1.50699 * 112.84987 * 294.69022 * 10 9 7 12 12 C 1.38234 * 119.99946 * 313.77600 * 11 10 9 13 13 C 1.38234 * 119.99919 * 180.25916 * 12 11 10 14 14 C 1.38235 * 119.99901 * 359.53014 * 13 12 11 15 15 C 1.38231 * 119.99937 * 0.42350 * 14 13 12 16 16 C 1.38225 * 119.99884 * 133.75368 * 11 10 9 17 17 C 1.53785 * 113.61112 * 163.49627 * 10 9 7 18 18 C 1.53785 * 87.07884 * 270.79996 * 17 10 9 19 19 H 1.09004 * 113.61197 * 89.20273 * 18 17 10 20 20 F 1.39899 * 113.61233 * 220.01771 * 18 17 10 21 21 C 1.53778 * 113.68891 * 65.96047 * 10 9 7 22 22 C 1.35812 * 109.71767 * 0.24495 * 6 5 4 23 23 C 1.40610 * 119.13438 * 179.97438 * 4 3 2 24 24 C 1.39774 * 120.12334 * 0.02617 * 23 4 3 25 25 C 1.50696 * 120.10084 * 180.02562 * 24 23 4 26 26 O 1.42896 * 109.47375 * 74.99350 * 25 24 23 27 27 Si 1.86292 * 109.47385 * 194.99853 * 25 24 23 28 28 C 1.36631 * 119.80988 * 359.97438 * 24 23 4 29 29 C 1.38251 * 120.12086 * 0.02562 * 3 2 1 30 30 H 1.09004 * 109.46550 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47182 * 299.99805 * 1 2 3 32 32 H 1.08993 * 109.47223 * 60.00407 * 1 2 3 33 33 H 0.97004 * 119.99697 * 5.02013 * 9 7 6 34 34 H 1.08004 * 120.00039 * 359.97438 * 12 11 10 35 35 H 1.08003 * 120.00312 * 179.72023 * 13 12 11 36 36 H 1.08000 * 120.00048 * 180.21644 * 14 13 12 37 37 H 1.08006 * 120.00253 * 179.78689 * 15 14 13 38 38 H 1.08007 * 120.00126 * 0.02562 * 16 11 10 39 39 H 1.09006 * 113.61370 * 25.34440 * 17 10 9 40 40 H 1.08996 * 113.61283 * 156.16862 * 17 10 9 41 41 H 1.09001 * 113.60962 * 203.66987 * 21 10 9 42 42 H 1.08993 * 113.61583 * 334.57695 * 21 10 9 43 43 H 1.07996 * 126.95599 * 179.75744 * 22 6 5 44 44 H 1.09007 * 109.46873 * 314.99971 * 25 24 23 45 45 H 0.96699 * 114.00178 * 180.02562 * 26 25 24 46 46 H 1.48500 * 110.00211 * 299.99701 * 27 25 24 47 47 H 1.48501 * 110.00093 * 61.31718 * 27 25 24 48 48 H 1.08001 * 119.75265 * 180.02562 * 28 24 23 49 49 H 1.08004 * 119.66829 * 359.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 3.4386 1.2875 -0.0005 5 8 4.4141 0.3575 -0.0016 6 6 5.6317 0.9388 -0.0023 7 6 6.9131 0.2187 -0.0029 8 8 7.9596 0.8391 -0.0030 9 7 6.9288 -1.1290 -0.0033 10 6 8.2011 -1.8468 0.1070 11 6 9.1024 -1.6261 -1.0805 12 6 8.5921 -1.7177 -2.3619 13 6 9.4199 -1.5205 -3.4512 14 6 10.7560 -1.2223 -3.2590 15 6 11.2660 -1.1299 -1.9775 16 6 10.4392 -1.3318 -0.8882 17 6 8.0419 -3.3269 0.4929 18 6 8.1133 -2.8706 1.9598 19 1 7.1425 -2.6175 2.3861 20 9 8.8590 -3.7268 2.7773 21 6 8.9056 -1.6511 1.4599 22 6 5.4944 2.2900 0.0037 23 6 4.0553 2.5511 -0.0011 24 6 3.2765 3.7118 -0.0005 25 6 3.9379 5.0658 -0.0017 26 8 4.4589 5.3403 -1.3036 27 14 2.6867 6.3686 0.4539 28 6 1.9136 3.6152 0.0000 29 6 1.2957 2.3726 0.0005 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 6.0975 -1.6236 -0.0767 34 1 7.5476 -1.9477 -2.5121 35 1 9.0223 -1.5965 -4.4525 36 1 11.4020 -1.0649 -4.1100 37 1 12.3107 -0.9003 -1.8273 38 1 10.8379 -1.2603 0.1130 39 1 7.0767 -3.7495 0.2137 40 1 8.8817 -3.9506 0.1869 41 1 9.9822 -1.8166 1.4194 42 1 8.6378 -0.7211 1.9611 43 1 6.2873 3.0232 0.0084 44 1 4.7512 5.0735 0.7241 45 1 4.9001 6.1976 -1.3780 46 1 1.5727 6.3684 -0.5280 47 1 2.1607 6.1124 1.8188 48 1 1.3127 4.5126 0.0000 49 1 0.2173 2.3120 0.0005 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12905100_6672420.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:42:05 Heat of formation + Delta-G solvation = -40.536108 kcal Electronic energy + Delta-G solvation = -37568.037457 eV Core-core repulsion = 32537.912046 eV Total energy + Delta-G solvation = -5030.125411 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 398.141 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -48.66554 -43.88714 -41.98735 -40.80417 -39.87820 -39.05884 -38.63387 -37.13274 -34.56466 -33.77955 -32.18288 -31.99035 -31.85694 -31.08217 -28.69362 -27.33697 -26.60226 -26.13270 -24.87217 -24.17201 -23.45081 -22.68976 -22.11166 -21.78553 -20.53204 -19.95852 -19.01793 -18.63626 -18.55223 -18.44132 -17.81059 -17.50115 -17.22080 -17.07524 -16.68933 -16.62477 -16.40328 -16.20985 -15.94106 -15.71609 -15.57907 -15.46818 -15.34379 -14.83686 -14.63920 -14.43184 -14.34534 -14.18615 -14.09563 -14.02000 -13.75715 -13.55058 -13.48433 -13.42424 -13.21026 -12.72317 -12.60988 -12.44978 -12.27164 -12.15308 -11.96919 -11.93874 -11.82146 -11.68878 -11.44399 -11.13200 -10.51141 -10.31395 -9.99927 -9.87396 -9.69990 -9.15542 -4.93441 -0.79640 -0.09269 0.31592 0.44710 0.49510 1.04047 1.27547 1.65962 1.69595 1.79877 1.93665 1.99373 2.21092 2.71832 3.00762 3.08485 3.15717 3.28779 3.35661 3.38498 3.40917 3.61444 3.67277 3.73714 3.81709 3.94772 3.97266 4.02479 4.04426 4.12489 4.17829 4.21026 4.30108 4.31117 4.32248 4.47376 4.51970 4.55058 4.59903 4.63626 4.64928 4.69379 4.70360 4.76522 4.88191 4.91613 5.00020 5.04742 5.09530 5.15349 5.24258 5.42548 5.50393 5.57659 5.59096 6.03447 6.05448 6.15947 6.73511 6.88228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.327 6.327 3 C 0.141 3.859 4 C 0.026 3.974 5 O -0.176 6.176 6 C -0.030 4.030 7 C 0.609 3.391 8 O -0.520 6.520 9 N -0.687 5.687 10 C 0.195 3.805 11 C -0.084 4.084 12 C -0.117 4.117 13 C -0.131 4.131 14 C -0.127 4.127 15 C -0.128 4.128 16 C -0.116 4.116 17 C -0.138 4.138 18 C 0.066 3.934 19 H 0.126 0.874 20 F -0.216 7.216 21 C -0.163 4.163 22 C -0.106 4.106 23 C -0.097 4.097 24 C -0.069 4.069 25 C -0.086 4.086 26 O -0.563 6.563 27 Si 0.782 3.218 28 C -0.106 4.106 29 C -0.171 4.171 30 H 0.122 0.878 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.421 0.579 34 H 0.125 0.875 35 H 0.135 0.865 36 H 0.138 0.862 37 H 0.138 0.862 38 H 0.133 0.867 39 H 0.113 0.887 40 H 0.116 0.884 41 H 0.114 0.886 42 H 0.079 0.921 43 H 0.180 0.820 44 H 0.085 0.915 45 H 0.403 0.597 46 H -0.280 1.280 47 H -0.285 1.285 48 H 0.144 0.856 49 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.288 2.228 -0.131 4.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.241 6.241 3 C 0.095 3.905 4 C -0.023 4.023 5 O -0.078 6.078 6 C -0.080 4.080 7 C 0.395 3.605 8 O -0.397 6.397 9 N -0.339 5.339 10 C 0.108 3.892 11 C -0.085 4.085 12 C -0.136 4.136 13 C -0.149 4.149 14 C -0.145 4.145 15 C -0.146 4.146 16 C -0.134 4.134 17 C -0.176 4.176 18 C 0.030 3.970 19 H 0.143 0.857 20 F -0.197 7.197 21 C -0.202 4.202 22 C -0.127 4.127 23 C -0.098 4.098 24 C -0.070 4.070 25 C -0.194 4.194 26 O -0.373 6.373 27 Si 0.685 3.315 28 C -0.124 4.124 29 C -0.189 4.189 30 H 0.140 0.860 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.260 0.740 34 H 0.143 0.857 35 H 0.153 0.847 36 H 0.156 0.844 37 H 0.156 0.844 38 H 0.150 0.850 39 H 0.131 0.869 40 H 0.134 0.866 41 H 0.133 0.867 42 H 0.098 0.902 43 H 0.197 0.803 44 H 0.103 0.897 45 H 0.254 0.746 46 H -0.208 1.208 47 H -0.212 1.212 48 H 0.161 0.839 49 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -4.558 1.696 0.020 4.864 hybrid contribution -0.331 -0.584 -0.076 0.676 sum -4.889 1.112 -0.055 5.014 Atomic orbital electron populations 1.23503 0.75318 1.06272 1.02942 1.86149 1.24283 1.25305 1.88355 1.17855 0.86277 0.86622 0.99783 1.19114 0.88155 0.87175 1.07823 1.84014 1.12644 1.34732 1.76406 1.21995 0.83913 0.92693 1.09408 1.16542 0.84913 0.82432 0.76637 1.90926 1.30863 1.67912 1.49993 1.45517 1.09874 1.04903 1.73572 1.19709 0.83322 0.93572 0.92569 1.19638 0.94146 1.01029 0.93670 1.21072 1.00126 1.00209 0.92148 1.21403 0.94239 0.99788 0.99468 1.21484 0.95901 0.99224 0.97881 1.21434 1.00763 0.99753 0.92641 1.21284 0.93299 0.98927 0.99874 1.23924 1.06633 0.93449 0.93614 1.23250 0.95528 0.89011 0.89183 0.85668 1.92803 1.78968 1.72532 1.75409 1.24103 1.02137 0.99142 0.94796 1.22853 0.94795 0.94612 1.00409 1.19594 0.92957 0.92450 1.04791 1.18875 0.92807 0.93359 1.01941 1.24958 1.06367 0.98805 0.89307 1.86466 1.78367 1.43852 1.28579 0.94024 0.76636 0.84620 0.76190 1.20686 0.93509 0.98278 0.99918 1.21273 1.01774 0.89640 1.06225 0.86028 0.90854 0.90990 0.74034 0.85709 0.84702 0.84430 0.84384 0.84977 0.86888 0.86608 0.86743 0.90221 0.80265 0.89657 0.74563 1.20766 1.21190 0.83926 0.80607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.07 9.81 113.37 1.11 1.05 16 2 O -0.33 -1.36 10.50 -93.22 -0.98 -2.34 16 3 C 0.14 0.85 6.70 22.56 0.15 1.00 16 4 C 0.03 0.24 7.35 23.14 0.17 0.41 16 5 O -0.18 -1.45 10.29 -13.42 -0.14 -1.59 16 6 C -0.03 -0.23 7.07 24.00 0.17 -0.06 16 7 C 0.61 4.18 7.29 86.54 0.63 4.81 16 8 O -0.52 -6.38 15.62 -4.21 -0.07 -6.45 16 9 N -0.69 -0.70 4.84 -427.55 -2.07 -2.77 16 10 C 0.19 0.16 0.82 3.38 0.00 0.16 16 11 C -0.08 -0.36 4.24 -19.87 -0.08 -0.44 16 12 C -0.12 -0.51 9.46 22.27 0.21 -0.30 16 13 C -0.13 -0.52 10.05 22.27 0.22 -0.30 16 14 C -0.13 -0.46 10.05 22.27 0.22 -0.24 16 15 C -0.13 -0.51 10.05 22.27 0.22 -0.29 16 16 C -0.12 -0.55 9.22 22.27 0.21 -0.35 16 17 C -0.14 0.42 7.25 31.12 0.23 0.64 16 18 C 0.07 -0.04 5.58 31.12 0.17 0.14 16 19 H 0.13 -0.44 8.14 -2.38 -0.02 -0.45 16 20 F -0.22 -1.10 17.41 44.97 0.78 -0.32 16 21 C -0.16 -0.24 6.44 31.12 0.20 -0.04 16 22 C -0.11 -0.84 10.68 23.79 0.25 -0.59 16 23 C -0.10 -0.84 6.16 -20.24 -0.12 -0.96 16 24 C -0.07 -0.43 5.30 -19.87 -0.11 -0.53 16 25 C -0.09 -0.05 2.69 71.23 0.19 0.15 16 26 O -0.56 -0.58 12.86 -148.98 -1.92 -2.50 16 27 Si 0.78 -2.57 30.20 68.60 2.07 -0.50 16 28 C -0.11 -0.43 8.62 22.02 0.19 -0.24 16 29 C -0.17 -0.38 9.03 22.40 0.20 -0.18 16 30 H 0.12 -1.00 8.14 -2.39 -0.02 -1.02 16 31 H 0.07 -0.55 7.66 -2.39 -0.02 -0.57 16 32 H 0.07 -0.52 7.66 -2.39 -0.02 -0.53 16 33 H 0.42 -1.30 8.38 -92.71 -0.78 -2.07 16 34 H 0.12 0.23 8.02 -2.91 -0.02 0.21 16 35 H 0.14 0.06 8.06 -2.91 -0.02 0.04 16 36 H 0.14 -0.05 8.06 -2.91 -0.02 -0.07 16 37 H 0.14 0.02 8.06 -2.91 -0.02 0.00 16 38 H 0.13 0.32 5.71 -2.91 -0.02 0.31 16 39 H 0.11 -0.81 8.09 -2.38 -0.02 -0.83 16 40 H 0.12 -0.30 8.09 -2.39 -0.02 -0.32 16 41 H 0.11 0.11 5.86 -2.39 -0.01 0.09 16 42 H 0.08 0.31 7.57 -2.39 -0.02 0.29 16 43 H 0.18 1.02 8.06 -2.91 -0.02 1.00 16 44 H 0.09 -0.19 7.96 -2.38 -0.02 -0.21 16 45 H 0.40 -3.88 8.74 -74.06 -0.65 -4.53 16 46 H -0.28 -0.52 6.75 99.48 0.67 0.15 16 47 H -0.29 -0.55 7.11 99.48 0.71 0.15 16 48 H 0.14 0.20 4.85 -2.91 -0.01 0.18 16 49 H 0.18 -0.82 6.26 -2.91 -0.02 -0.84 16 Total: 0.00 -23.43 412.78 1.76 -21.67 By element: Atomic # 1 Polarization: -8.64 SS G_CDS: -0.38 Total: -9.02 kcal Atomic # 6 Polarization: -0.63 SS G_CDS: 4.45 Total: 3.82 kcal Atomic # 7 Polarization: -0.70 SS G_CDS: -2.07 Total: -2.77 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: -3.10 Total: -12.88 kcal Atomic # 9 Polarization: -1.10 SS G_CDS: 0.78 Total: -0.32 kcal Atomic # 14 Polarization: -2.57 SS G_CDS: 2.07 Total: -0.50 kcal Total: -23.43 1.76 -21.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12905100_6672420.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.866 kcal (2) G-P(sol) polarization free energy of solvation -23.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds