Wall clock time and date at job start Sat Mar 6 2021 20:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.33817 * 122.44504 * 2 1 4 4 C 1.50699 * 124.52880 * 0.04150 * 3 2 1 5 5 O 1.42903 * 109.46666 * 29.99784 * 4 3 2 6 6 Si 1.86294 * 109.47561 * 149.99779 * 4 3 2 7 7 S 1.70618 * 110.95033 * 179.78208 * 3 2 1 8 8 C 1.75823 * 91.56553 * 0.30982 * 7 3 2 9 9 C 1.46588 * 125.46027 * 179.97438 * 8 7 3 10 10 O 1.21696 * 119.99807 * 179.69327 * 9 8 7 11 11 N 1.34778 * 119.99839 * 359.40749 * 9 8 7 12 12 C 1.46494 * 119.99790 * 175.04783 * 11 9 8 13 13 C 1.50707 * 112.84737 * 70.16401 * 12 11 9 14 14 C 1.38229 * 120.00256 * 194.32153 * 13 12 11 15 15 C 1.38232 * 120.00224 * 179.78507 * 14 13 12 16 16 C 1.38234 * 119.99921 * 0.47442 * 15 14 13 17 17 C 1.38237 * 119.99868 * 359.75782 * 16 15 14 18 18 C 1.38233 * 119.99974 * 0.02767 * 17 16 15 19 19 C 1.53777 * 113.61968 * 298.97112 * 12 11 9 20 20 C 1.53782 * 87.07908 * 270.87989 * 19 12 11 21 21 H 1.09009 * 113.61391 * 89.11580 * 20 19 12 22 22 F 1.39896 * 113.61832 * 219.93194 * 20 19 12 23 23 C 1.53780 * 87.08430 * 334.56741 * 20 19 12 24 24 C 1.36652 * 109.08256 * 359.69383 * 8 7 3 25 25 H 1.08999 * 109.46746 * 269.99958 * 1 2 3 26 26 H 1.08999 * 109.47232 * 29.99922 * 1 2 3 27 27 H 1.08998 * 109.46590 * 150.00263 * 1 2 3 28 28 H 1.09000 * 109.47227 * 270.00384 * 4 3 2 29 29 H 0.96703 * 114.00089 * 179.97438 * 5 4 3 30 30 H 1.48496 * 110.00411 * 178.68445 * 6 4 3 31 31 H 1.48505 * 109.99835 * 300.00575 * 6 4 3 32 32 H 0.97001 * 119.99971 * 355.05698 * 11 9 8 33 33 H 1.08008 * 119.99663 * 0.02562 * 14 13 12 34 34 H 1.08003 * 120.00437 * 180.25319 * 15 14 13 35 35 H 1.08001 * 120.00114 * 179.78798 * 16 15 14 36 36 H 1.08001 * 119.99711 * 180.02562 * 17 16 15 37 37 H 1.07996 * 119.99794 * 179.97438 * 18 17 16 38 38 H 1.09000 * 113.61806 * 25.42765 * 19 12 11 39 39 H 1.08996 * 113.61914 * 156.25255 * 19 12 11 40 40 H 1.09001 * 113.61241 * 270.88606 * 23 20 19 41 41 H 1.08997 * 113.61683 * 139.97994 * 23 20 19 42 42 H 1.07998 * 123.35213 * 180.21004 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2250 1.1293 0.0000 4 6 1.6355 2.5162 0.0009 5 8 0.3758 2.4978 0.6753 6 14 2.7929 3.6824 0.8789 7 16 3.8969 0.7893 0.0061 8 6 3.5938 -0.9426 -0.0009 9 6 4.6233 -1.9861 -0.0004 10 8 4.3003 -3.1595 0.0001 11 7 5.9274 -1.6461 -0.0063 12 6 6.9554 -2.6840 0.1037 13 6 7.0543 -3.5428 -1.1308 14 6 7.7506 -4.7362 -1.0886 15 6 7.8375 -5.5261 -2.2197 16 6 7.2364 -5.1179 -3.3957 17 6 6.5441 -3.9221 -3.4392 18 6 6.4535 -3.1344 -2.3069 19 6 6.8792 -3.4906 1.4107 20 6 7.8078 -2.4308 2.0267 21 1 7.2759 -1.5893 2.4707 22 9 8.7833 -2.9654 2.8750 23 6 8.3122 -2.1571 0.6000 24 6 2.2447 -1.1600 -0.0005 25 1 -0.3633 0.0000 1.0277 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3632 -0.8900 -0.5138 28 1 1.4927 2.8510 -1.0265 29 1 -0.0620 3.3592 0.7145 30 1 2.2380 5.0597 0.8589 31 1 2.9958 3.2369 2.2809 32 1 6.1854 -0.7142 -0.0833 33 1 8.2234 -5.0533 -0.1708 34 1 8.3781 -6.4605 -2.1857 35 1 7.3072 -5.7333 -4.2803 36 1 6.0742 -3.6034 -4.3578 37 1 5.9130 -2.2000 -2.3410 38 1 5.8838 -3.5101 1.8544 39 1 7.3305 -4.4803 1.3400 40 1 9.1565 -2.7817 0.3081 41 1 8.4737 -1.0999 0.3893 42 1 1.8020 -2.1451 -0.0009 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_12905100_6739946.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:42:10 Heat of formation + Delta-G solvation = -19.044828 kcal Electronic energy + Delta-G solvation = -28174.344739 eV Core-core repulsion = 24128.120172 eV Total energy + Delta-G solvation = -4046.224567 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 348.098 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -48.55076 -41.95186 -40.21780 -39.47201 -38.50011 -37.53265 -34.43682 -32.33242 -31.80538 -31.61843 -30.23876 -27.26748 -27.01337 -25.55847 -24.35497 -23.45265 -22.53287 -21.90789 -20.48869 -20.00696 -19.20620 -18.63518 -18.53428 -17.41195 -17.30989 -16.86181 -16.62522 -16.38444 -16.02172 -15.95950 -15.77106 -15.57668 -15.10478 -14.91422 -14.58213 -14.48484 -14.30359 -14.18434 -13.94326 -13.84487 -13.64594 -13.37116 -13.18446 -13.14630 -12.96291 -12.60660 -12.56253 -12.26607 -12.17418 -12.00893 -11.89486 -11.72981 -11.48473 -11.08496 -10.89453 -10.32571 -9.75816 -9.66427 -9.55239 -9.39991 -5.27967 -0.62674 0.23900 0.44480 0.56353 0.65999 0.98323 1.32493 1.43299 1.77774 1.81230 2.15149 2.77531 3.03113 3.09740 3.20777 3.41562 3.46132 3.54244 3.68078 3.75494 4.03816 4.08365 4.10444 4.17512 4.21878 4.27289 4.38907 4.46625 4.51631 4.52889 4.58246 4.64907 4.70740 4.84187 4.88090 4.89466 4.98222 5.04375 5.08351 5.18017 5.32253 5.40069 5.47133 5.60457 5.68230 5.73049 6.12516 6.20866 6.26295 7.06226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.089 4.089 3 C -0.194 4.194 4 C -0.033 4.033 5 O -0.524 6.524 6 Si 0.658 3.342 7 S 0.201 5.799 8 C -0.265 4.265 9 C 0.596 3.404 10 O -0.505 6.505 11 N -0.713 5.713 12 C 0.198 3.802 13 C -0.072 4.072 14 C -0.111 4.111 15 C -0.116 4.116 16 C -0.119 4.119 17 C -0.118 4.118 18 C -0.099 4.099 19 C -0.156 4.156 20 C 0.066 3.934 21 H 0.111 0.889 22 F -0.202 7.202 23 C -0.151 4.151 24 C -0.044 4.044 25 H 0.072 0.928 26 H 0.078 0.922 27 H 0.060 0.940 28 H 0.088 0.912 29 H 0.382 0.618 30 H -0.242 1.242 31 H -0.242 1.242 32 H 0.402 0.598 33 H 0.124 0.876 34 H 0.124 0.876 35 H 0.122 0.878 36 H 0.121 0.879 37 H 0.116 0.884 38 H 0.092 0.908 39 H 0.110 0.890 40 H 0.114 0.886 41 H 0.091 0.909 42 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.100 5.454 -2.731 6.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.102 4.102 3 C -0.313 4.313 4 C -0.145 4.145 5 O -0.332 6.332 6 Si 0.556 3.444 7 S 0.469 5.531 8 C -0.385 4.385 9 C 0.382 3.618 10 O -0.381 6.381 11 N -0.366 5.366 12 C 0.111 3.889 13 C -0.074 4.074 14 C -0.129 4.129 15 C -0.134 4.134 16 C -0.137 4.137 17 C -0.136 4.136 18 C -0.117 4.117 19 C -0.194 4.194 20 C 0.030 3.970 21 H 0.129 0.871 22 F -0.182 7.182 23 C -0.189 4.189 24 C -0.077 4.077 25 H 0.090 0.910 26 H 0.096 0.904 27 H 0.079 0.921 28 H 0.106 0.894 29 H 0.231 0.769 30 H -0.165 1.165 31 H -0.165 1.165 32 H 0.238 0.762 33 H 0.142 0.858 34 H 0.142 0.858 35 H 0.140 0.860 36 H 0.139 0.861 37 H 0.134 0.866 38 H 0.110 0.890 39 H 0.128 0.872 40 H 0.133 0.867 41 H 0.110 0.890 42 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 2.471 5.444 -1.934 6.283 hybrid contribution -2.462 -0.039 0.067 2.463 sum 0.009 5.405 -1.867 5.718 Atomic orbital electron populations 1.20518 0.88644 1.02519 1.02817 1.18702 0.98565 0.90526 1.02394 1.23276 0.98272 0.98571 1.11159 1.24028 0.91523 0.97532 1.01388 1.86688 1.31751 1.35569 1.79193 0.95572 0.85993 0.78726 0.84127 1.82592 1.02318 0.98597 1.69566 1.24533 0.97854 0.96677 1.19422 1.16892 0.81183 0.87565 0.76143 1.90896 1.81293 1.17900 1.47968 1.45537 1.04797 1.09741 1.76481 1.19619 0.88062 0.88409 0.92833 1.19528 0.98769 0.95297 0.93770 1.20927 0.99403 0.93889 0.98707 1.21129 0.99759 0.99676 0.92879 1.21204 0.97720 0.96581 0.98164 1.21147 0.99144 0.94961 0.98329 1.20866 0.98739 0.99762 0.92367 1.24058 1.01860 0.99278 0.94209 1.23125 0.88187 0.97582 0.88120 0.87111 1.92832 1.64582 1.87651 1.73167 1.24004 0.96473 1.03883 0.94498 1.20716 0.90893 1.00136 0.95999 0.90959 0.90357 0.92095 0.89428 0.76912 1.16505 1.16546 0.76179 0.85848 0.85792 0.85987 0.86055 0.86629 0.88974 0.87225 0.86744 0.89037 0.82714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.05 8.70 36.01 0.31 0.27 16 2 C -0.09 -0.12 5.75 -106.45 -0.61 -0.73 16 3 C -0.19 -0.02 5.57 -35.86 -0.20 -0.22 16 4 C -0.03 0.05 2.75 36.01 0.10 0.15 16 5 O -0.52 0.56 9.81 -35.23 -0.35 0.21 16 6 Si 0.66 -1.36 31.30 -169.99 -5.32 -6.68 16 7 S 0.20 -0.31 19.79 -107.50 -2.13 -2.44 16 8 C -0.27 -0.29 6.45 -36.79 -0.24 -0.53 16 9 C 0.60 1.22 6.39 -12.89 -0.08 1.14 16 10 O -0.51 -2.84 15.30 5.19 0.08 -2.76 16 11 N -0.71 0.46 4.18 -49.25 -0.21 0.26 16 12 C 0.20 -0.01 0.93 -132.16 -0.12 -0.13 16 13 C -0.07 -0.12 4.73 -104.62 -0.50 -0.61 16 14 C -0.11 -0.15 8.77 -39.59 -0.35 -0.50 16 15 C -0.12 -0.15 10.05 -39.58 -0.40 -0.55 16 16 C -0.12 -0.17 10.05 -39.58 -0.40 -0.57 16 17 C -0.12 -0.21 10.05 -39.58 -0.40 -0.61 16 18 C -0.10 -0.20 8.89 -39.58 -0.35 -0.55 16 19 C -0.16 -0.10 6.65 -25.92 -0.17 -0.27 16 20 C 0.07 -0.03 5.57 -25.92 -0.14 -0.18 16 21 H 0.11 -0.21 8.14 -51.92 -0.42 -0.64 16 22 F -0.20 -0.44 17.41 2.25 0.04 -0.40 16 23 C -0.15 0.27 7.20 -25.92 -0.19 0.09 16 24 C -0.04 -0.08 9.80 -40.44 -0.40 -0.47 16 25 H 0.07 0.07 8.14 -51.93 -0.42 -0.35 16 26 H 0.08 0.02 6.42 -51.93 -0.33 -0.31 16 27 H 0.06 -0.01 8.13 -51.93 -0.42 -0.43 16 28 H 0.09 -0.30 7.96 -51.93 -0.41 -0.71 16 29 H 0.38 -1.88 8.74 45.56 0.40 -1.48 16 30 H -0.24 0.13 7.11 56.52 0.40 0.53 16 31 H -0.24 -0.35 7.11 56.52 0.40 0.06 16 32 H 0.40 -1.30 7.82 -40.82 -0.32 -1.62 16 33 H 0.12 -0.02 6.48 -52.48 -0.34 -0.36 16 34 H 0.12 -0.06 8.06 -52.48 -0.42 -0.49 16 35 H 0.12 -0.04 8.06 -52.49 -0.42 -0.46 16 36 H 0.12 0.02 8.06 -52.49 -0.42 -0.40 16 37 H 0.12 0.15 6.86 -52.49 -0.36 -0.21 16 38 H 0.09 0.20 7.16 -51.93 -0.37 -0.17 16 39 H 0.11 0.06 6.16 -51.93 -0.32 -0.26 16 40 H 0.11 -0.20 7.83 -51.93 -0.41 -0.61 16 41 H 0.09 -0.34 8.10 -51.93 -0.42 -0.76 16 42 H 0.16 0.28 8.06 -52.49 -0.42 -0.15 16 LS Contribution 360.48 15.07 5.43 5.43 Total: 0.00 -7.87 360.48 -11.62 -19.49 By element: Atomic # 1 Polarization: -3.77 SS G_CDS: -5.04 Total: -8.81 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: -4.13 Total: -4.29 kcal Atomic # 7 Polarization: 0.46 SS G_CDS: -0.21 Total: 0.26 kcal Atomic # 8 Polarization: -2.29 SS G_CDS: -0.27 Total: -2.55 kcal Atomic # 9 Polarization: -0.44 SS G_CDS: 0.04 Total: -0.40 kcal Atomic # 14 Polarization: -1.36 SS G_CDS: -5.32 Total: -6.68 kcal Atomic # 16 Polarization: -0.31 SS G_CDS: -2.13 Total: -2.44 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -7.87 -11.62 -19.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12905100_6739946.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.443 kcal (2) G-P(sol) polarization free energy of solvation -7.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds