Wall clock time and date at job start Sat Mar 6 2021 20:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.33817 * 122.44504 * 2 1 4 4 C 1.50699 * 124.52880 * 0.04150 * 3 2 1 5 5 O 1.42903 * 109.46666 * 29.99784 * 4 3 2 6 6 Si 1.86294 * 109.47561 * 149.99779 * 4 3 2 7 7 S 1.70618 * 110.95033 * 179.78208 * 3 2 1 8 8 C 1.75823 * 91.56553 * 0.30982 * 7 3 2 9 9 C 1.46588 * 125.46027 * 179.97438 * 8 7 3 10 10 O 1.21696 * 119.99807 * 179.69327 * 9 8 7 11 11 N 1.34778 * 119.99839 * 359.40749 * 9 8 7 12 12 C 1.46494 * 119.99790 * 175.04783 * 11 9 8 13 13 C 1.50707 * 112.84737 * 70.16401 * 12 11 9 14 14 C 1.38229 * 120.00256 * 194.32153 * 13 12 11 15 15 C 1.38232 * 120.00224 * 179.78507 * 14 13 12 16 16 C 1.38234 * 119.99921 * 0.47442 * 15 14 13 17 17 C 1.38237 * 119.99868 * 359.75782 * 16 15 14 18 18 C 1.38233 * 119.99974 * 0.02767 * 17 16 15 19 19 C 1.53777 * 113.61968 * 298.97112 * 12 11 9 20 20 C 1.53782 * 87.07908 * 270.87989 * 19 12 11 21 21 H 1.09009 * 113.61391 * 89.11580 * 20 19 12 22 22 F 1.39896 * 113.61832 * 219.93194 * 20 19 12 23 23 C 1.53780 * 87.08430 * 334.56741 * 20 19 12 24 24 C 1.36652 * 109.08256 * 359.69383 * 8 7 3 25 25 H 1.08999 * 109.46746 * 269.99958 * 1 2 3 26 26 H 1.08999 * 109.47232 * 29.99922 * 1 2 3 27 27 H 1.08998 * 109.46590 * 150.00263 * 1 2 3 28 28 H 1.09000 * 109.47227 * 270.00384 * 4 3 2 29 29 H 0.96703 * 114.00089 * 179.97438 * 5 4 3 30 30 H 1.48496 * 110.00411 * 178.68445 * 6 4 3 31 31 H 1.48505 * 109.99835 * 300.00575 * 6 4 3 32 32 H 0.97001 * 119.99971 * 355.05698 * 11 9 8 33 33 H 1.08008 * 119.99663 * 0.02562 * 14 13 12 34 34 H 1.08003 * 120.00437 * 180.25319 * 15 14 13 35 35 H 1.08001 * 120.00114 * 179.78798 * 16 15 14 36 36 H 1.08001 * 119.99711 * 180.02562 * 17 16 15 37 37 H 1.07996 * 119.99794 * 179.97438 * 18 17 16 38 38 H 1.09000 * 113.61806 * 25.42765 * 19 12 11 39 39 H 1.08996 * 113.61914 * 156.25255 * 19 12 11 40 40 H 1.09001 * 113.61241 * 270.88606 * 23 20 19 41 41 H 1.08997 * 113.61683 * 139.97994 * 23 20 19 42 42 H 1.07998 * 123.35213 * 180.21004 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2250 1.1293 0.0000 4 6 1.6355 2.5162 0.0009 5 8 0.3758 2.4978 0.6753 6 14 2.7929 3.6824 0.8789 7 16 3.8969 0.7893 0.0061 8 6 3.5938 -0.9426 -0.0009 9 6 4.6233 -1.9861 -0.0004 10 8 4.3003 -3.1595 0.0001 11 7 5.9274 -1.6461 -0.0063 12 6 6.9554 -2.6840 0.1037 13 6 7.0543 -3.5428 -1.1308 14 6 7.7506 -4.7362 -1.0886 15 6 7.8375 -5.5261 -2.2197 16 6 7.2364 -5.1179 -3.3957 17 6 6.5441 -3.9221 -3.4392 18 6 6.4535 -3.1344 -2.3069 19 6 6.8792 -3.4906 1.4107 20 6 7.8078 -2.4308 2.0267 21 1 7.2759 -1.5893 2.4707 22 9 8.7833 -2.9654 2.8750 23 6 8.3122 -2.1571 0.6000 24 6 2.2447 -1.1600 -0.0005 25 1 -0.3633 0.0000 1.0277 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3632 -0.8900 -0.5138 28 1 1.4927 2.8510 -1.0265 29 1 -0.0620 3.3592 0.7145 30 1 2.2380 5.0597 0.8589 31 1 2.9958 3.2369 2.2809 32 1 6.1854 -0.7142 -0.0833 33 1 8.2234 -5.0533 -0.1708 34 1 8.3781 -6.4605 -2.1857 35 1 7.3072 -5.7333 -4.2803 36 1 6.0742 -3.6034 -4.3578 37 1 5.9130 -2.2000 -2.3410 38 1 5.8838 -3.5101 1.8544 39 1 7.3305 -4.4803 1.3400 40 1 9.1565 -2.7817 0.3081 41 1 8.4737 -1.0999 0.3893 42 1 1.8020 -2.1451 -0.0009 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_12905100_6739946.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:42:10 Heat of formation + Delta-G solvation = -14.270055 kcal Electronic energy + Delta-G solvation = -28174.137690 eV Core-core repulsion = 24128.120172 eV Total energy + Delta-G solvation = -4046.017518 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 348.098 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -48.62623 -42.00787 -40.25356 -39.51598 -38.54040 -37.47108 -34.53565 -32.35432 -31.85333 -31.67527 -30.22056 -27.26815 -27.01150 -25.55625 -24.34890 -23.51567 -22.57789 -21.95428 -20.53670 -19.99317 -19.21871 -18.61665 -18.50439 -17.38937 -17.30162 -16.90063 -16.66617 -16.36857 -16.06296 -16.02582 -15.84999 -15.63685 -15.13920 -14.94524 -14.60712 -14.51035 -14.35614 -14.14557 -14.00560 -13.90959 -13.55945 -13.43528 -13.18563 -13.14075 -12.95724 -12.62539 -12.58039 -12.29610 -12.14054 -12.00498 -11.95269 -11.74077 -11.48198 -11.23561 -10.82102 -10.40018 -9.84767 -9.64486 -9.60585 -9.36152 -5.13620 -0.67009 0.27416 0.36995 0.47255 0.66682 1.05043 1.33209 1.52706 1.78734 1.89282 2.04492 2.72759 3.14384 3.21384 3.22564 3.40980 3.47589 3.62322 3.69208 3.80578 4.01054 4.05928 4.10980 4.16343 4.24288 4.32072 4.40689 4.49613 4.56068 4.57442 4.58895 4.64307 4.70560 4.79808 4.84762 4.85727 4.97306 4.98551 5.03260 5.13177 5.30537 5.38567 5.42903 5.53280 5.60220 5.65715 6.06679 6.27683 6.54513 6.99703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.111 4.111 3 C -0.204 4.204 4 C -0.041 4.041 5 O -0.542 6.542 6 Si 0.732 3.268 7 S 0.273 5.727 8 C -0.287 4.287 9 C 0.597 3.403 10 O -0.549 6.549 11 N -0.698 5.698 12 C 0.196 3.804 13 C -0.080 4.080 14 C -0.122 4.122 15 C -0.126 4.126 16 C -0.130 4.130 17 C -0.131 4.131 18 C -0.114 4.114 19 C -0.163 4.163 20 C 0.066 3.934 21 H 0.128 0.872 22 F -0.217 7.217 23 C -0.137 4.137 24 C -0.059 4.059 25 H 0.062 0.938 26 H 0.082 0.918 27 H 0.060 0.940 28 H 0.114 0.886 29 H 0.398 0.602 30 H -0.259 1.259 31 H -0.291 1.291 32 H 0.417 0.583 33 H 0.134 0.866 34 H 0.139 0.861 35 H 0.137 0.863 36 H 0.133 0.867 37 H 0.119 0.881 38 H 0.072 0.928 39 H 0.106 0.894 40 H 0.116 0.884 41 H 0.119 0.881 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.067 7.301 -3.337 8.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.123 4.123 3 C -0.324 4.324 4 C -0.152 4.152 5 O -0.353 6.353 6 Si 0.634 3.366 7 S 0.542 5.458 8 C -0.407 4.407 9 C 0.384 3.616 10 O -0.428 6.428 11 N -0.351 5.351 12 C 0.109 3.891 13 C -0.081 4.081 14 C -0.141 4.141 15 C -0.144 4.144 16 C -0.148 4.148 17 C -0.149 4.149 18 C -0.132 4.132 19 C -0.201 4.201 20 C 0.030 3.970 21 H 0.146 0.854 22 F -0.198 7.198 23 C -0.174 4.174 24 C -0.093 4.093 25 H 0.081 0.919 26 H 0.101 0.899 27 H 0.079 0.921 28 H 0.131 0.869 29 H 0.250 0.750 30 H -0.183 1.183 31 H -0.218 1.218 32 H 0.255 0.745 33 H 0.152 0.848 34 H 0.157 0.843 35 H 0.155 0.845 36 H 0.151 0.849 37 H 0.137 0.863 38 H 0.090 0.910 39 H 0.125 0.875 40 H 0.134 0.866 41 H 0.137 0.863 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 3.454 7.332 -2.565 8.501 hybrid contribution -2.794 -0.572 0.304 2.868 sum 0.660 6.761 -2.261 7.159 Atomic orbital electron populations 1.20467 0.88572 1.02756 1.02277 1.18751 0.98905 0.90739 1.03878 1.23720 0.99548 0.99219 1.09901 1.24272 0.91522 0.96392 1.02971 1.86654 1.32041 1.37213 1.79345 0.94835 0.84396 0.76675 0.80715 1.82223 1.00487 0.95501 1.67560 1.24575 0.97435 0.98570 1.20073 1.17049 0.81968 0.87132 0.75416 1.90868 1.82044 1.19717 1.50159 1.45393 1.03905 1.10487 1.75291 1.19643 0.89111 0.88492 0.91844 1.19731 0.98560 0.95675 0.94183 1.21150 0.99637 0.93998 0.99277 1.21414 0.99801 1.00310 0.92872 1.21462 0.97703 0.96774 0.98887 1.21396 0.99378 0.95249 0.98854 1.21021 0.99186 1.00222 0.92804 1.24073 1.01129 0.99888 0.95011 1.23292 0.87682 0.97310 0.88676 0.85449 1.92800 1.65223 1.87982 1.73775 1.23964 0.95153 1.05561 0.92761 1.20715 0.91541 1.00023 0.97064 0.91883 0.89899 0.92064 0.86892 0.75029 1.18340 1.21800 0.74483 0.84832 0.84285 0.84532 0.84943 0.86344 0.90952 0.87538 0.86577 0.86264 0.84017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.17 8.70 71.24 0.62 0.45 16 2 C -0.11 -0.37 5.75 -21.05 -0.12 -0.49 16 3 C -0.20 0.06 5.57 24.68 0.14 0.20 16 4 C -0.04 0.19 2.75 71.24 0.20 0.38 16 5 O -0.54 1.50 9.81 -148.98 -1.46 0.04 16 6 Si 0.73 -3.87 31.30 68.60 2.15 -1.73 16 7 S 0.27 -1.11 19.79 -56.49 -1.12 -2.23 16 8 C -0.29 -0.85 6.45 24.08 0.16 -0.69 16 9 C 0.60 3.11 6.39 86.42 0.55 3.66 16 10 O -0.55 -7.46 15.30 -4.34 -0.07 -7.52 16 11 N -0.70 0.93 4.18 -427.93 -1.79 -0.86 16 12 C 0.20 0.01 0.93 3.39 0.00 0.01 16 13 C -0.08 -0.31 4.73 -19.86 -0.09 -0.40 16 14 C -0.12 -0.42 8.77 22.27 0.20 -0.22 16 15 C -0.13 -0.39 10.05 22.27 0.22 -0.16 16 16 C -0.13 -0.43 10.05 22.27 0.22 -0.21 16 17 C -0.13 -0.55 10.05 22.27 0.22 -0.32 16 18 C -0.11 -0.55 8.89 22.27 0.20 -0.35 16 19 C -0.16 -0.38 6.65 31.12 0.21 -0.17 16 20 C 0.07 -0.09 5.57 31.12 0.17 0.08 16 21 H 0.13 -0.62 8.14 -2.38 -0.02 -0.64 16 22 F -0.22 -0.94 17.41 44.97 0.78 -0.15 16 23 C -0.14 0.65 7.20 31.12 0.22 0.87 16 24 C -0.06 -0.31 9.80 21.72 0.21 -0.10 16 25 H 0.06 0.22 8.14 -2.39 -0.02 0.20 16 26 H 0.08 0.06 6.42 -2.39 -0.02 0.05 16 27 H 0.06 0.08 8.13 -2.39 -0.02 0.06 16 28 H 0.11 -1.03 7.96 -2.39 -0.02 -1.05 16 29 H 0.40 -4.30 8.74 -74.05 -0.65 -4.95 16 30 H -0.26 0.60 7.11 99.48 0.71 1.31 16 31 H -0.29 -0.90 7.11 99.48 0.71 -0.20 16 32 H 0.42 -3.21 7.82 -92.71 -0.73 -3.94 16 33 H 0.13 0.05 6.48 -2.91 -0.02 0.03 16 34 H 0.14 -0.13 8.06 -2.91 -0.02 -0.15 16 35 H 0.14 -0.08 8.06 -2.91 -0.02 -0.10 16 36 H 0.13 0.11 8.06 -2.91 -0.02 0.09 16 37 H 0.12 0.38 6.86 -2.91 -0.02 0.36 16 38 H 0.07 0.46 7.16 -2.39 -0.02 0.45 16 39 H 0.11 0.26 6.16 -2.39 -0.01 0.25 16 40 H 0.12 -0.52 7.83 -2.39 -0.02 -0.54 16 41 H 0.12 -1.20 8.10 -2.39 -0.02 -1.22 16 42 H 0.14 0.96 8.06 -2.91 -0.02 0.94 16 Total: 0.00 -20.55 360.48 1.57 -18.98 By element: Atomic # 1 Polarization: -8.81 SS G_CDS: -0.25 Total: -9.06 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: 3.33 Total: 2.53 kcal Atomic # 7 Polarization: 0.93 SS G_CDS: -1.79 Total: -0.86 kcal Atomic # 8 Polarization: -5.95 SS G_CDS: -1.53 Total: -7.48 kcal Atomic # 9 Polarization: -0.94 SS G_CDS: 0.78 Total: -0.15 kcal Atomic # 14 Polarization: -3.87 SS G_CDS: 2.15 Total: -1.73 kcal Atomic # 16 Polarization: -1.11 SS G_CDS: -1.12 Total: -2.23 kcal Total: -20.55 1.57 -18.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_12905100_6739946.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.709 kcal (2) G-P(sol) polarization free energy of solvation -20.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds